LOC110498948 (LOC106589430)


Basic Information

Item Value
gene id LOC110498948
gene name LOC106589430
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 10948832 ~ 10987833 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036955741.1
cttCCATCACatcgagagagatagagagcacgcgagcgagagggagagagagatagagagcaaatGAGCCAGAGACAGAGCTCTCTTGGCATCCGCTGTCGAGTCCGTTCGCGGCAGAGAATAGCGGTCTTATGGGACAGAGATGGGAGAGGTGTGCCGTTTCTTTAACAGCCTATGACACTGACACAGCGGCCAGGATGGATCTAACCACCCGGAAAATGATGCTTCTGATCGGTCTCAGCTGCCTCTGGCTCCAAGTGCTTTCAGAGGTGGTAGCTGATGACAGTTATTTAAACGAGGTGCAAAACACAGCCCCTCTCTCCTGTTCGGAGGGTTTTACAGAGCTGGGTTACTATAACGGCTCTGTGTCTCAGACGGACTCTGGCGCTCTCTGCCTGCGGTGGACAGAGTTTCCAGACTACGTGCTGCAGTACCCTGGCCGAGGCCTTGGGGAGCACAGCTACTGCCGTAACCCTGACagagagtccaacccctggtgcTTCTTCAGACAGACCTCTGGGGCCATCGGCTGGTCTTACTGCGACTGCCACCAGGgtGCAGCTCGGCTGGTGGGCGGGACATCGTCAGGAAGTGGACGTGTGGAGGTGTACCTGAATGGCCAGTGGGGGGCAGTGTGTGACTCTCATTGGACAGACAGAGATGCCAGTGTGATCTGCAGACAGCTGGGACTGGGtgagATCGGCACAGCGTTGCAGAACTCCCGGTTTGGCTCGGGCTCCGGTCTCTTCCACTATGAGCGGCTGGGTTGCCGTGGTGATGAGAGCTCCATCAGCCAATGCCGGAGCAGGACATTTGTTACCGGGGATTGTAGCCATGGAAACGAGGCAGGAGTGGTGTGTGCTCCACCAGAAGGCAGTGGTCCTCCTCTACGATTggttggaggagaggaagactttGAGGGGCGTGTTGAGGTGTTCCATGGCGGTAGGTGGGGCTCTGTCTGCGATGACCAATGGGACGACAGAGATGCAGAGGTGGTCTGTCGACAGCTGGGCTTCggGGGTGTGGCGAAGGCCTGGTCATGGGCCCACTTCGGAAAGGGCTCAGGTCCCATTCAATTGGACGCCGTAAGGTGTACAGGAAATGAACTCTTCTTGGACCAGTGTCTTCATGGAGACTGGGAACAACACAACTGTGACCATATGGAAGATGCAGGGGTGTCCTGCAGCCcctacacagacggTGTGGTCCGGTTGGTAGGAGGAGACAGTCCATGGGAGGGTCGTGTGGAGGTGTTCCACTCTGGGGACTGGGGTACGGTGTGCGACGACCACTGGACTCAACAACACGCACAGGTGGTCTGTCGACAGCTCGGATacagGGGCCATGCAGACGTCATGGCTGACAGAACGTTTGGCGAGGGTTCCGGGCTCATCCTATTGGACGACGTTCGTTGTGAGGGGACGGAGTCATCCCTGCTGGACTGTCACCATGGCATATGGGGCCGTAGCGACTGTTCCCATGGAGAGGACGTGGGCGTCCGTTGCAGAGCcggagctaaagaagaagagacCAATGAGGTCCCGGCTGTTGCACCTGCCACAGgTCCCCTGGTGCGTCTGGTAGGGGGTGGTAGCCATAAGGAAGGTCGTGTGGAGGTGTATCTCCATGGAGCCTGGGGAAGTATCTGTGACTCAGGCTGGAGCAACCTGAACGCCGCCGTGGTCTGCAGACAGCTGGGCcacagtggtCATGCGGTAGTGGTGGGTGGTTTCGGTCGGGGAAAGGGTCCCGTCCACCTGGACCAGGTGAGGTGTAGGGGGAAGGAGGACTTCCTGGGGGAGTGTCCATCTCTGGGCCGGAGCCCTGAGggctgcagacagagagaggatgcagCGGTGAGCTGTGACCCCGCCCCCCAGGCAACAGAGGGCCAAGTCAGGCCAAGTGAGCGCACCTGTGGAGTGAGGAAGGTTGTGGAGGAAGGGAACGAGAGGAAGAgtggagtgggaggaggaggagagaatatACTCGGCACGTCGTGGCCGTGGCAGGTGTCAGTGTGGTTGGGTTCTGAGGGGAAAGACGGCCATCCTATTTGCAGCGGAACTCTGATCTCTCCCTGCTGGGCCCTCGCCTCCGCTCACTGCTTCACCAGGTTTGGTATTGACCCGTCCCACTACGTTGTGCGCGTGGGGGGTTCTGACCGAACTCTGACCCTGGAGAAAGTGGTGGTCCACAGGAAGTTCAGGTCAGATCAGGGCCCTGGGGGTCATGACCTGGCCCTGCTGAGTGTGCCCAGCCCCAAGGGTCACTGTTTGACTTTTGACCCCCACACCAATGCTGCCTGCCTCCCCACCCCGGAAACTGCGGGTGGCAAGACCCCCTCCTCCTGCATCGCTGCGGTTACCGCAGGCTGGGACGGCCCAGATGCTGTGCTACAGTCCTGGGTACCCCTCCTGTCGTCATGGCAGTGTAAGAAGCGTTATGGGGATGGTTACTCTTCCCACGGCACGCTATGTGCCGGCAGCCCCCCTGACACACGCCGTCTCCACAAGAACAACGGTTGCCAAGGCAACTGGGGTGGCGGGCTGGTGTGCCAGGGAGATGAGGGGCGGTGGGTGTTGACCGGGATTGTCTCCGGGGGTTACGGTTGCAGTGACCCCTCAACCCCGGCCCTCTACACACGGGTCGGCCGGTTCCGGCGCTGGATCGAGGAGGTCACACAGCGggagcagaacacacacagtcaggagCACGAGGAGCTCACACACACGGAGGAGCGGAGCATACTCGCATACGTTTATGAcgagctgcaacacacacactcccaagaGCAGAGCACACACACTGATGATCaattcatacacacacagcatAACAATATCCATACACACGATCACAATGAGCataaacacactcacactcacaatcTGCAAAGCAACACTCACAAtgagctcaaacacacacacaatcagcatgcacatacacacactcacgatAAACACTCCCAGACCCGCGAAgctgtcactcacacacacgcccTGGTCTGATCGATGACACGCCATTGGCTCACCGGCCGTGCCATGTGACTTtccgaggaagaggaggaagaatggatgataaaggaggaagaggaggaggacatgtTGGaaaagaaggagggggagaaagaggaaaagaCATCAGAGATCAGagatcctcctctccctctgcctcctgaCCCAGACGATGTAAACCTCTAATATTCATGTCAACTCTGTCTGATTATTATCATAACttagctgtggtgtgtgtgttacgctagctgtggggtgtgtgtgtaacactagctgtgatgtgtgtgtgttacactagctgtggggtgtgtgtgtgttacgctagctgtttggtgtgtgtgttacgcta

Function

NR:

description
PREDICTED: neurotrypsin-like

GO:

id name namespace
GO:0006898 receptor-mediated endocytosis biological_process
GO:0006508 proteolysis biological_process
GO:0016020 membrane cellular_component
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0005044 scavenger receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036955741.1 True 3369 mRNA 0.57 14 10948832 10987833

Neighbor

gene id symbol gene type direction distance location
syt15 LOC106589230 coding upstream 53469 10891813 ~ 10895363 (+)
LOC110498943 LOC106589437 coding upstream 74539 10871100 ~ 10874293 (+)
LOC110498940 LOC106589438 coding upstream 81837 10850770 ~ 10866995 (+)
LOC110498939 LOC106589440 coding upstream 111719 10829218 ~ 10837113 (+)
LOC110498938 LOC106589439 coding upstream 120403 10826764 ~ 10828429 (+)
gdh03 gdh03 coding downstream 99289 11087122 ~ 11231541 (+)
LOC118942035 NA coding downstream 217590 11205423 ~ 11207593 (+)
LOC118941993 LOC106589416 coding downstream 258367 11246200 ~ 11247516 (+)
LOC118941994 LOC106589416 coding downstream 275442 11263275 ~ 11264589 (+)
LOC110498741 LOC106589412 coding downstream 384892 11372725 ~ 11404820 (+)
G1662385 NA non-coding upstream 64568 10882572 ~ 10884264 (+)
G1662363 rgs9 non-coding upstream 179961 10767434 ~ 10768871 (+)
G1662362 NA non-coding upstream 183806 10758977 ~ 10765026 (+)
G1662359 NA non-coding upstream 200488 10732103 ~ 10748344 (+)
G1662358 NA non-coding upstream 218010 10730565 ~ 10730822 (+)
G1662371 NA non-coding downstream 2618 10990451 ~ 10994307 (+)
G1662391 NA non-coding downstream 81055 11068888 ~ 11069323 (+)
G1662383 NA non-coding downstream 81671 11069504 ~ 11070255 (+)
G1662518 NA non-coding downstream 82969 11070802 ~ 11113378 (+)
G1662519 NA non-coding downstream 83342 11071175 ~ 11071533 (+)
LOC110499585 NA other upstream 143581 10802684 ~ 10805251 (+)
G1662037 NA other upstream 472143 10476167 ~ 10476689 (+)
G1661477 NA other upstream 896743 10051622 ~ 10052089 (+)
LOC110498922 cssa28h17orf62 other upstream 2421312 8524125 ~ 8527761 (+)
G1662536 LOC106589414 other downstream 316977 11304810 ~ 11306183 (+)
LOC110498970 cript other downstream 561963 11549728 ~ 11553514 (+)
LOC110498999 LOC106589380 other downstream 1833846 12816635 ~ 12836089 (+)
LOC110499000 hecd2 other downstream 1895124 12861668 ~ 12895798 (+)

Expression


Co-expression Network