ptcd1 (LOC106589428)


Basic Information

Item Value
gene id ptcd1
gene name LOC106589428
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 11070998 ~ 11079210 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021575690.2
TTGCAGTTCAATTTTTTTCCTGTAGATGACAGTTGTTCTCTGTTCTGTCCCGCTGGAGACCTAACAAGACACGAAGAAGTCTGACCTCCAAAAATGTGACAGCCTTGCTAATCTATCCCCGATATATCGGTCTGATTTATCAGAAACAACGTCAATATGAAGACATTTCATAATCACGGAACCTGTACAATATGTATGGTCGTCTCAACAACACGTTTCAAATACATACATTGTTAGACGTTTTACCAGTACAAGATTTTACTCGATTATTGACCTGTTTTGTCTGGTAGATATATGGAAAAACATGCTTGCGTTTTCCTTGCAGATCTTCATGAGTTGACGACGGCTGTGTGTACTCTGACATAAATAAACATGGTTGGAACCAAAACATTAGACTTCTACACGGTAGAACTGTCGGATACAGTAGGATTCTGAAGAATAATTGTCATACTGCATTTATTCGTGTAATATGAACGGTTGATAGCTAACGAGTTACAAACTTGTTAacagttggctaacgttagctaccaaCAGTAACCCCGAGATtactaactctagctagctagtgtACACCCAGGACTGTAAAGATGTTGCAGTGTGTGTCTCGGTCGTGTTTGAGGAACGGGAGAAGCATTGTCGACTACGTCGTCAGATACGGCTGTACTCAGACAGCACGAGGTCTGTCGAGCTTGGGCTCCGGTAGCACCGTGAGAGCTCCACGTTCCTGGTCGGTTCACCCGGTAACGGACATCAACCGAAGAGCCTTCACTGGGTCTGTGTCGGTGAGTTCTAGAAGAACCGGGGATGTCCAGGAATCACCGGGCGTTGAGGACTTCGGATCTCTTTCCGCTGATTTTTCCTCCAGACGGGCCTTCCGGAAGACCACCCCAGAGCTGCAGGAGATGTTGTATCGGGAGGAGAGGCAGGCGGccgggcaggaggaggagagggagccgGTGGCCTTCAGGTCTAGGACTGGGCGGAGGAACAcacagtactggtacttccttcAGTGTAAAAGACTCATCAAGGAGAACAAGCTGTCTGAGGCCCTGTCCATGTTCCAGAGGGAgatgttggagggagagagactcccACCTGAGGAATATAACTACACTGTCCTGATAGGAGGCTGTGGGCGAGCAGGACATCTCAAACACGCCTTCAAACTCTACAACGACATGAAGAAGAGAGGTCTGGTTCCTAGCGACGCCACCTACACCGCTCTGTTCAACGCCTGTGCCGAGTCACCACGGAAACAAGCCGGGCTGCAGCAAGCCATCCACTTGGAGCAGGAGCTGCGGCGGAAGAACCATCCCCTCAGTGACATCACATACCACGCCCTGCTGAAGACACACGCCCTCACCAACCACCTTCGAGCCTGTTTACACACACTGCGGGACATGCTACAGGCTGGTCATGCAGTAACTCAGGAGACCTTCCACTTCCTGCTGATGGgctgtgtgagagacagagtcaCTGGCTTCAGACAGGCCCTGCAggtgtaTCGTcagatgttgaggatggggattCGTCCCGACGTCCAGAACTACAACCTGCTGCTCCGCGCTGCTAGAGATTGTGGGATAGGTAACCCCGCCGTGGCCTCTGCCCTGCTGCTGACCTCTGATTGCGGCCAGGAAGGTCAAGCGgtaaaggtcaggggtcaggggtcggcTCCACTGGACGTCGACGCTCTGGAGAGTCAACTGTTCACACAACACCCCGACAACGACCTTAGTCACCATAGCAATGACCCTAGCAACATCCTCAGACACCATAGCGACCTGGACAGTAGTGTGGTTGCCCCGATAACAACCCAACTGGTGATggtgaggaagggaggagagcaaGAGGCTCCCATTGgttctctcccctgtctgtcaggAACCAGTTCCCACCCCCCCAACCTGCTGGACCTATCAGTGGGCAGGGCTGAAGAGGGGGGTGTGGTCTCGCTTGGTGTGGTGAGCGGAATGTTTGATAGGCTGGCGCTGATGGGCGGGGCCCAGGGCTTCCTGGATAAGATGGCCACTGCGGGGCTCTGCCCAGACATCAGAACTCTCACACTATTAGCTGACACCATGGAGCCCGGCATCCAATCACTGCACAGCCTGCTGGCGGTCGCTAAGCAACACGGTGTGAAGCTGGACGCAGCGTTCTACAACAGTGTGATCCGCAGGGCAGCACGTGCTGGAGACCTACAAGAGgctaaggcagtGATGTGTGTGATGCAGGAAAGACGTGTGCGTGCGGATGTACGGACATACGGAAGTCTGGCTCTGGgctgcaacagacagacagatgcccTACAGCTGCTGGGGGACatgcagGCGGCGGGGGTGCAGCCCAGTGTGCAGGTGTTCTCTGCTCTTATTGGCTGTGCCAGCAGGAGGCTGGACTATGTGTATCTGAGGCTGGTGCTTAGAGCCATGAGGGAACACAACGTCCCACctaatgacatcatcatcacTCAGCTAGAACACGCCTCCCAGTACCCGCCCAACTATAAccagtatAAGTTTAGGAACACCTACCTGTCTCAGATTGATGGTTTCCGTGGTTACTACCACCAGTGGCTGACCACCATGCCTGCCCAGGAGACAGGAGGACCTGAGAGAGACCACCCTGCAGAGACGAGACAAGATGGACACCAGCAGGCAGCAGCAGCAAGGCGACACCgcaagcaacacagctgaacacacacacctttgtacccgcactcgcacacacacactgcaagcaTTGTAAATGTGAGCGTCTACAACCCCAGAACCATGATGCTGTTACTCTGTGTCGTCACGTGTCCTGTAAATATCAgatgaggctggtgggaggacctATAGGAGGATGGCCTCatttgtaatggctggaatggagtaaatggaacagtcaatcatgtggtttccatatgtttgatgtcttTGACACGTTTCATTTTTTTCCATTCCAGCCTCTACAATGAGTCTGtcatcctatagctcctcccaacaGCCTCCAATGAAATATATGTAAACTGTTATGTTTCTTTTATGTAATAAACTTACAGTAATAAAA
>XR_005037924.1
TTTGCAGTTCAATTTTTTTCCTGTAGATGACAGTTGTTCTCTGTTCTGTCCCGCTGGAGACCTAACAAGACACGAAGAAGTCTGACCTCCAAAAATGTGACAGCCTTGCTAATCTATCCCCGATATATCGGTCTGATTTATCAGAAACAACGTCAATATGAAGACATTTCATAATCACGGAACCTGTACAATATGTATGGTCGTCTCAACAACACGTTTCAAATACATACATTGTTAGACGTTTTACCAGTACAAGATTTTACTCGATTATTGACCTGTTTTGTCTGGTAGATATATGGAAAAACATGCTTGCGTTTTCCTTGCAGATCTTCATGAGTTGACGACGGCTGTGTGTACTCTGACATAAATAAACATGGTTGGAACCAAAACATTAGACTTCTACACGGTAGAACTGTCGGATACAGTAGGATTCTGAAGAATAATTGTCATACTGCATTTATTCGTGTAATATGAACGGTTGATAGCTAACGAGTTACAAACTTGTTAacagttggctaacgttagctaccaaCAGTAACCCCGAGATtactaactctagctagctagtgtACACCCAGGACTGTAAAGATGTTGCAGTGTGTGTCTCGGTCGTGTTTGAGGAACGGGAGAAGCATTGTCGACTACGTCGTCAGATACGGCTGTACTCAGACAGCACGAGGTCTGTCGAGCTTGGGCTCCGGTAGCACCGTGAGAGCTCCACGTTCCTGGTCGGTTCACCCGGTAACGGACATCAACCGAAGAGCCTTCACTGGGTCTGTGTCGGTGAGTTCTAGAAGAACCGGGGATGTCCAGGAATCACCGGGCGTTGAGGACTTCGGATCTCTTTCCGCTGATTTTTCCTCCAGACGGGCCTTCCGGAAGACCACCCCAGAGCTGCAGGAGATGTTGTATCGGGAGGAGAGGCAGGCGGccgggcaggaggaggagagggagccgGTGGCCTTCAGGTCTAGGACTGGGCGGAGGAACAcacagtactggtacttccttcAGTGTAAAAGACTCATCAAGGAGAACAAGCTGTCTGAGGCCCTGTCCATGTTCCAGAGGGAgatgttggagggagagagactcccACCTGAGGAATATAACTACACTGTCCTGATAGGAGGCTGTGGGCGAGCAGGACATCTCAAACACGCCTTCAAACTCTACAACGACATGAAGAAGAGAGGTCTGGTTCCTAGCGACGCCACCTACACCGCTCTGTTCAACGCCTGTGCCGAGTCACCACGGAAACAAGCCGGGCTGCAGCAAGCCATCCACTTGGAGCAGGAGCTGCGGCGGAAGAACCATCCCCTCAGTGACATCACATACCACGCCCTGCTGAAGACACACGCCCTCACCAACCACCTTCGAGCCTGTTTACACACACTGCGGGACATGCTACAGGCTGGTCATGCAGTAACTCAGGAGACCTTCCACTTCCTGCTGATGGgctgtgtgagagacagagtcaCTGGCTTCAGACAGGCCCTGCAggtgtaTCGTcagatgttgaggatggggattCGTCCCGACGTCCAGAACTACAACCTGCTGCTCCGCGCTGCTAGAGATTGTGGGATAGGTAACCCCGCCGTGGCCTCTGCCCTGCTGCTGACCTCTGATTGCGGCCAGGAAGGTCAAGCGgtaaaggtcaggggtcaggggtcggcTCCACTGGACGTCGACGCTCTGGAGAGTCAACTGTTCACACAACACCCCGACAACGACCTTAGTCACCATAGCAATGACCCTAGCAACATCCTCAGACACCATAGCGACCTGGACAGTAGTGTGGTTGCCCCGATAACAACCCAACTGGTGATggtgaggaagggaggagagcaaGAGGCTCCCATTGgttctctcccctgtctgtcaggAACCAGTTCCCACCCCCCCAACCTGCTGGACCTATCAGTGGGCAGGGCTGAAGAGGGGGGTGTGGTCTCGCTTGGTGTGGTGAGCGGAATGTTTGATAGGCTGGCGCTGATGGGCGGGGCCCAGGGCTTCCTGGATAAGATGGCCACTGCGGGGCTCTGCCCAGACATCAGAACTCTCACACTATTAGCTGACACCATGGAGCCCGGCATCCAATCACTGCACAGCCTGCTGGCGGTCGCTAAGCAACACGGTGTGAAGCTGGACGCAGCGTTCTACAACAGTGTGATCCGCAGGGCAGCACGTGCTGGAGACCTACAAGAGgctaaggcagtGATGTGTGTGATGCAGGAAAGACGTGTGCGTGCGGATGTACGGACATACGGAAGTCTGGCTCTGGgctgcaacagacagacagatgcccTACAGCTGCTGGGGGACatgcagGCGGCGGGGGTGCAGCCCAGTGTGCAGGTGTTCTCTGCTCTTATTGGCTGTGCCAGCAGGAGGCTGGACTATGTGTATCTGAGGCTGGTGCTTAGAGCCATGAGGGAACACAACGTCCCACctaatgacatcatcatcacTCAGCTAGAACACGCCTCCCAGTACCCGCCCAACTATAAccagtatAAGTTTAGGAACACCTACCTGTCTCAGATTGATGGTTTCCGTGGTTACTACCACCAGTGGCTGACCACCATGCCTGCCCAGGAGACAGGAGGACCTGAGAGAGACCACCCTGCAGAGACGAGACAAGATGGACACCAGCAGGCAGCAGCAGCAAGGCGACACCgcaagcaacacagctgaacacacacacctttgtacccgcactcgcacacacacactgcaagcaTTGTAAATGTGTCGTCACGTGTCCTGTAAATATCAgatgaggctggtgggaggacctATAGGAGGATGGCCTCatttgtaatggctggaatggagtaaatggaacagtcaatcatgtggtttccatatgtttgatgtcttTGACACGTTTCATTTTTTTCCATTCCAGCCTCTACAATGAGTCTGtcatcctatagctcctcccaacaGCCTCCAATGAAATATATGTAAACTGTTATGTTTCTTTTATGTAATAAACTTACAGTAATAAAA

Function

NR:

description
pentatricopeptide repeat-containing protein 1, mitochondrial-like

GO: NA

KEGG:

id description
K17710 PTCD1; pentatricopeptide repeat domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021575690.2 False 3057 mRNA 0.52 8 11070998 11079209
XR_005037924.1 True 3018 mRNA 0.52 9 11070998 11079210
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110498949 LOC106589429 coding downstream 29544 11000957 ~ 11041454 (-)
LOC110498947 LOC106589432 coding downstream 98054 10970727 ~ 10972944 (-)
LOC110498946 LOC106589433 coding downstream 103277 10963233 ~ 10967721 (-)
LOC110498945 LOC106589434 coding downstream 153293 10904484 ~ 10917705 (-)
zgc:112285 LOC106589435 coding downstream 189134 10874496 ~ 10881864 (-)
LOC110498957 NA coding upstream 38085 11117295 ~ 11118883 (-)
LOC110498953 NA coding upstream 42855 11121913 ~ 11158776 (-)
LOC110498952 LOC106589424 coding upstream 56305 11135515 ~ 11144237 (-)
LOC110498951 LOC106589423 coding upstream 73321 11152531 ~ 11170466 (-)
LOC110498958 NA coding upstream 93317 11172527 ~ 11174543 (-)
G1663066 NA non-coding downstream 3866 11066933 ~ 11067132 (-)
G1663012 NA non-coding downstream 43346 10944093 ~ 11027652 (-)
G1662896 NA non-coding downstream 204031 10771090 ~ 10866967 (-)
G1662993 NA non-coding upstream 120355 11199565 ~ 11202116 (-)
G1663122 NA non-coding upstream 159316 11238526 ~ 11255560 (-)
LOC110511226 NA non-coding upstream 183985 11263195 ~ 11272173 (-)
G1662995 NA non-coding upstream 185190 11264400 ~ 11269866 (-)
G1663128 NA non-coding upstream 199536 11278746 ~ 11279092 (-)
G1662039 NA other downstream 593813 10476963 ~ 10477185 (-)
G1661001 LOC106589450 other downstream 1610883 9422783 ~ 9460115 (-)
G1661023 NA other downstream 1670051 9399117 ~ 9400947 (-)
LOC110498913 h3f3b other downstream 2681744 8386968 ~ 8389308 (-)
LOC110498864 LOC106589517 other downstream 4499543 6568700 ~ 6582912 (-)
G1663264 NA other upstream 463406 11542616 ~ 11543091 (-)
G1664239 NA other upstream 1170940 12250150 ~ 12251106 (-)
G1665402 LOC106589366 other upstream 2322071 13401281 ~ 13407377 (-)
G1666656 LOC106589183 other upstream 3142989 14222199 ~ 14223019 (-)

Expression

ptcd1(LOC106589428) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 30.
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ptcd1(LOC106589428) Expression in each Bioproject

Bar chart with 21 bars.
ptcd1(LOC106589428) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
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Co-expression Network