LOC110498951 (LOC106589423)


Basic Information

Item Value
gene id LOC110498951
gene name LOC106589423
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 11152531 ~ 11170466 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036955754.1
TTCAGGTTTTCAGATTTAGGTGTTTGTCCCAACCGTCTGGAAATAACAGGGGGGGGAGAACTCCGGAACGAGCCTGAAGGAGGAGAATCAGAAAGCGAGTGCaagaggaaacaagtacaaagaGGACAACGAGTGAAGGAGGAAAGAGCTTTcaggaggaagcagtgtgtgtgtgtgtgtgtgtgtgtgtaggttttaTCCAAAGCTGAAGATGGCTACATACACAGTATCTCTCAATGGCTCTGCGCCATGGGGTTTCAGACTACACGGAGGAAAAGACTTCAATATGCCACTTACCATCTCCAGGatAACTCCAGGCAGTAAGGCTGCAGGGGGCAGTCTCGTCCAGGGTGACATCATCACATCGATAGACGGCCTTAGTACAGAAGGCATGACACACCTGGAGGCACAGAACAAGATTAAGATGGCCTCCAATAAACTGGCCCTCACCATGCAAAAGTCGAAACGTCCTACCCCTGTTCCCATGGCAACGCCCAGAATGGACTCCCCCATGTCAGTTATTCCTCACCAGaagGAGGGTGAGCATGTTAAaaaagaagtagaagaagaagaagaggtggaGGCGAAGAAGTTTGGGAGACTATTGTCTAAAAAGCCTGTAGAGCCGACCCCTGCCCTCCGTACACCCTCTCcgctcctccccccctcccctgccGCTGCAGTGTCTCTCTCAAGCCAGAAGGGACAGTATAACTCCCCCATCAGCCTGTACTCTGCACACACTCTCAGAGAGATGGCCCTGCTGCAAGGCAAGGTTGCAGGAGATGGGGCAGGGGCCGCCaagctgggaggagagggggcagaCAGCGGAGTGCCGTTTCTAGGTGGTTCCCTGCCTATGAAGGACCCGGTGGTTGACAGTGCGTCTCCAGTCTACCAGGCTGTGATCCAGACACATGATAGAGACGAGGAGATTGCCGAGTGGGCCAGACGGGCTGCCAACTTGCAGTCCAAGAGCTTCAAGATGCTGGCCCATCTCACCGGCACCGAATACATGCAAGACCCAGATGAGGAGGCCCTGCAGAGGTCGAGgGATAAGTTTGAATCGGAGGTGAAAGGACCTCGCTTCCGCAAGCTGAAGAACTGGCACAATGGGCTCTCAGCTCAGATCCTCAATGTCCCTGAGACTCCCTTCTGATTGATCTGCCAGATCTATCCTTTTTCTTTTGAATGATTATAACGTTTGGAATgatttttgcttttctttcttGTTGGTTGTTTTGCCTCCTAACTGATAGGGAATtgtacaaaaaaagtatttaagagAAATTGTAAAAGTGATCATGTAAAACACACACTCGCGAACAcggacatgcgcacacacacacattcacacacacacctatgtaCGCATGCTAACAATTAACAAAgatgcacacacaaatacatatgAATGCACATATACCCACACAATTTAAATGTACTATTATCAATGTGAATAAATATTTTCTTTAAATCAAAA
>XM_021575693.2
TGATCAGAGTGAGGCATGCTGGGGGTAGGATTACAGGCCTTATAAGGCCCCTGTGCCATCCATCCCCGTCTCTGCTCCACTCAGCTATTCTTGTCCCGTCTGTCCCTTACCCTCAACTAAGGTGTTTGTCCCAACCGTCTGGAAATAACAGGGGGGGGAGAACTCCGGAACGAGCCTGAAGGAGGAGAATCAGAAAGCGAGTGCaagaggaaacaagtacaaagaGGACAACGAGTGAAGGAGGAAAGAGCTTTcaggaggaagcagtgtgtgtgtgtgtgtgtgtgtgtgtaggttttaTCCAAAGCTGAAGATGGCTACATACACAGTATCTCTCAATGGCTCTGCGCCATGGGGTTTCAGACTACACGGAGGAAAAGACTTCAATATGCCACTTACCATCTCCAGGatAACTCCAGGCAGTAAGGCTGCAGGGGGCAGTCTCGTCCAGGGTGACATCATCACATCGATAGACGGCCTTAGTACAGAAGGCATGACACACCTGGAGGCACAGAACAAGATTAAGATGGCCTCCAATAAACTGGCCCTCACCATGCAAAAGTCGAAACGTCCTACCCCTGTTCCCATGGCAACGCCCAGAATGGACTCCCCCATGTCAGTTATTCCTCACCAGaagATTATTGCAAACACGGCTGGAAATCAGGAGTATGTACCCAGCTTTAACCCCATAGCTCTGAAGGACTCGGCTCTGTCTACCCATAAGCCCATCGAGGTGCGCGGCCCGGGAGGCAAGGCCACCATCGTTCACGCTCAGTACAACACCCCCATCTCCATGTACTCACAGGACGCCATCATGGACGCTATTGCCGGACAGTCACAGTCCAAGGGCCATGAGGGTGAGGATGTACCTGCTGGCTCCCCCCTGGCTGGTTCCCTGCCTATGAAGGACCCGGTGGTTGACAGTGCGTCTCCAGTCTACCAGGCTGTGATCCAGACACATGATAGAGACGAGGAGATTGCCGAGTGGGCCAGACGGGCTGCCAACTTGCAGTCCAAGAGCTTCAAGATGCTGGCCCATCTCACCGGCACCGAATACATGCAAGACCCAGATGAGGAGGCCCTGCAGAGGTCGAGgGATAAGTTTGAATCGGAGGTGAAAGGACCTCGCTTCCGCAAGCTGAAGAACTGGCACAATGGGCTCTCAGCTCAGATCCTCAATGTCCCTGAGACTCCCTTCTGATTGATCTGCCAGATCTATCCTTTTTCTTTTGAATGATTATAACGTTTGGAATgatttttgcttttctttcttGTTGGTTGTTTTGCCTCCTAACTGATAGGGAATtgtacaaaaaaagtatttaagagAAATTGTAAAAGTGATCATGTAAAACACACACTCGCGAACAcggacatgcgcacacacacacattcacacacacacctatgtaCGCATGCTAACAATTAACAAAgatgcacacacaaatacatatgAATGCACATATACCCACACAATTTAAATGTACTATTATCAATGTGAATAAATATTTTCTTTAAATCAAAA
>XM_021575691.2
GGGTGATCAGAGTGAGGCATGCTGGGGGTAGGATTACAGGCCTTATAAGGCCCCTGTGCCATCCATCCCCGTCTCTGCTCCACTCAGCTATTCTTGTCCCGTCTGTCCCTTACCCTCAACTAAGGTGTTTGTCCCAACCGTCTGGAAATAACAGGGGGGGGAGAACTCCGGAACGAGCCTGAAGGAGGAGAATCAGAAAGCGAGTGCaagaggaaacaagtacaaagaGGACAACGAGTGAAGGAGGAAAGAGCTTTcaggaggaagcagtgtgtgtgtgtgtgtgtgtgtgtgtaggttttaTCCAAAGCTGAAGATGGCTACATACACAGTATCTCTCAATGGCTCTGCGCCATGGGGTTTCAGACTACACGGAGGAAAAGACTTCAATATGCCACTTACCATCTCCAGGatAACTCCAGGCAGTAAGGCTGCAGGGGGCAGTCTCGTCCAGGGTGACATCATCACATCGATAGACGGCCTTAGTACAGAAGGCATGACACACCTGGAGGCACAGAACAAGATTAAGATGGCCTCCAATAAACTGGCCCTCACCATGCAAAAGTCGAAACGTCCTACCCCTGTTCCCATGGCAACGCCCAGAATGGACTCCCCCATGTCAGTTATTCCTCACCAGaagGAGGGTGAGCATGTTAAaaaagaagtagaagaagaagaagaggtggaGGCGAAGAAGTTTGGGAGACTATTGTCTAAAAAGCCTGTAGAGCCGACCCCTGCCCTCCGTACACCCTCTCcgctcctccccccctcccctgccGCTGCAGTGTCTCTCTCAAGCCAGAAGGGACAGTATAACTCCCCCATCAGCCTGTACTCTGCACACACTCTCAGAGAGATGGCCCTGCTGCAAGGCAAGGTTGCAGGAGATGGGGCAGGGGCCGCCaagctgggaggagagggggcagaCAGCGGAGTGCCGTTTCTAGGTGGTTCCCTGCCTATGAAGGACCCGGTGGTTGACAGTGCGTCTCCAGTCTACCAGGCTGTGATCCAGACACATGATAGAGACGAGGAGATTGCCGAGTGGGCCAGACGGGCTGCCAACTTGCAGTCCAAGAGCTTCAAGATGCTGGCCCATCTCACCGGCACCGAATACATGCAAGACCCAGATGAGGAGGCCCTGCAGAGGTCGAGgGATAAGTTTGAATCGGAGGTGAAAGGACCTCGCTTCCGCAAGCTGAAGAACTGGCACAATGGGCTCTCAGCTCAGATCCTCAATGTCCCTGAGACTCCCTTCTGATTGATCTGCCAGATCTATCCTTTTTCTTTTGAATGATTATAACGTTTGGAATgatttttgcttttctttcttGTTGGTTGTTTTGCCTCCTAACTGATAGGGAATtgtacaaaaaaagtatttaagagAAATTGTAAAAGTGATCATGTAAAACACACACTCGCGAACAcggacatgcgcacacacacacattcacacacacacctatgtaCGCATGCTAACAATTAACAAAgatgcacacacaaatacatatgAATGCACATATACCCACACAATTTAAATGTACTATTATCAATGTGAATAAATATTTTCTTTAAATCAAAA

Function

NR:

description
LIM domain-binding protein 3-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036955754.1 False 1483 mRNA 0.49 8 11152531 11170297
XM_021575693.2 False 1525 mRNA 0.49 10 11152531 11170463
XM_021575691.2 True 1588 mRNA 0.50 8 11152531 11170466
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110498952 LOC106589424 coding downstream 8294 11135515 ~ 11144237 (-)
LOC110498953 NA coding downstream 28801 11121913 ~ 11158776 (-)
LOC110498957 NA coding downstream 33648 11117295 ~ 11118883 (-)
ptcd1 LOC106589428 coding downstream 73321 11070998 ~ 11079210 (-)
LOC110498949 LOC106589429 coding downstream 111077 11000957 ~ 11041454 (-)
LOC110498958 NA coding upstream 2061 11172527 ~ 11174543 (-)
LOC110498956 NA coding upstream 33451 11203917 ~ 11205489 (-)
LOC118942034 NA coding upstream 75129 11245595 ~ 11246153 (-)
LOC110498954 NA coding upstream 90683 11261149 ~ 11263141 (-)
LOC110511226 NA coding upstream 100554 11263195 ~ 11272173 (-)
G1663066 NA non-coding downstream 85399 11066933 ~ 11067132 (-)
G1663012 NA non-coding downstream 124879 10944093 ~ 11027652 (-)
zgc:112285 LOC106589435 non-coding downstream 274595 10874496 ~ 10881864 (-)
LOC110498740 LOC106589441 non-coding downstream 295005 10805103 ~ 10857526 (-)
G1662903 NA non-coding downstream 340672 10777125 ~ 10811859 (-)
G1662993 NA non-coding upstream 29099 11199565 ~ 11202116 (-)
G1663122 NA non-coding upstream 68060 11238526 ~ 11255560 (-)
G1662995 NA non-coding upstream 93934 11264400 ~ 11269866 (-)
G1663128 NA non-coding upstream 108280 11278746 ~ 11279092 (-)
G1662039 NA other downstream 675346 10476963 ~ 10477185 (-)
G1661001 LOC106589450 other downstream 1692416 9422783 ~ 9460115 (-)
G1661023 NA other downstream 1751584 9399117 ~ 9400947 (-)
LOC110498913 h3f3b other downstream 2763277 8386968 ~ 8389308 (-)
LOC110498864 LOC106589517 other downstream 4581076 6568700 ~ 6582912 (-)
G1663264 NA other upstream 372150 11542616 ~ 11543091 (-)
G1664239 NA other upstream 1079684 12250150 ~ 12251106 (-)
G1665402 LOC106589366 other upstream 2230815 13401281 ~ 13407377 (-)
G1666656 LOC106589183 other upstream 3051733 14222199 ~ 14223019 (-)
G1666788 NA other upstream 3254507 14424973 ~ 14425314 (-)

Expression

LOC110498951(LOC106589423) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 500.
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LOC110498951(LOC106589423) Expression in each Bioproject

Bar chart with 19 bars.
LOC110498951(LOC106589423) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 4000.
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Co-expression Network