Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110498958 |
| gene name | NA |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048584.1 |
| NCBI id | CM023238.2 |
| chromosome length | 46616863 |
| location | 11172527 ~ 11174543 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: melanopsin-A-like isoform X2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_002469900.2 | True | 1391 | mRNA | 0.47 | 3 | 11172527 | 11174543 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110498951 | LOC106589423 | coding | downstream | 2061 | 11152531 ~ 11170466 (-) |
| LOC110498952 | LOC106589424 | coding | downstream | 28290 | 11135515 ~ 11144237 (-) |
| LOC110498953 | NA | coding | downstream | 48797 | 11121913 ~ 11158776 (-) |
| LOC110498957 | NA | coding | downstream | 53644 | 11117295 ~ 11118883 (-) |
| ptcd1 | LOC106589428 | coding | downstream | 93317 | 11070998 ~ 11079210 (-) |
| LOC110498956 | NA | coding | upstream | 29374 | 11203917 ~ 11205489 (-) |
| LOC118942034 | NA | coding | upstream | 71052 | 11245595 ~ 11246153 (-) |
| LOC110498954 | NA | coding | upstream | 86606 | 11261149 ~ 11263141 (-) |
| LOC110511226 | NA | coding | upstream | 96477 | 11263195 ~ 11272173 (-) |
| LOC110498959 | LOC106589414 | coding | upstream | 126245 | 11300788 ~ 11334588 (-) |
| G1663066 | NA | non-coding | downstream | 105395 | 11066933 ~ 11067132 (-) |
| G1663012 | NA | non-coding | downstream | 144875 | 10944093 ~ 11027652 (-) |
| zgc:112285 | LOC106589435 | non-coding | downstream | 294591 | 10874496 ~ 10881864 (-) |
| LOC110498740 | LOC106589441 | non-coding | downstream | 315001 | 10805103 ~ 10857526 (-) |
| G1662903 | NA | non-coding | downstream | 360668 | 10777125 ~ 10811859 (-) |
| G1662993 | NA | non-coding | upstream | 25022 | 11199565 ~ 11202116 (-) |
| G1663122 | NA | non-coding | upstream | 63983 | 11238526 ~ 11255560 (-) |
| G1662995 | NA | non-coding | upstream | 89857 | 11264400 ~ 11269866 (-) |
| G1663128 | NA | non-coding | upstream | 104203 | 11278746 ~ 11279092 (-) |
| G1662039 | NA | other | downstream | 695342 | 10476963 ~ 10477185 (-) |
| G1661001 | LOC106589450 | other | downstream | 1712412 | 9422783 ~ 9460115 (-) |
| G1661023 | NA | other | downstream | 1771580 | 9399117 ~ 9400947 (-) |
| LOC110498913 | h3f3b | other | downstream | 2783273 | 8386968 ~ 8389308 (-) |
| G1663264 | NA | other | upstream | 368073 | 11542616 ~ 11543091 (-) |
| G1664239 | NA | other | upstream | 1075607 | 12250150 ~ 12251106 (-) |
| G1665402 | LOC106589366 | other | upstream | 2226738 | 13401281 ~ 13407377 (-) |
| G1666656 | LOC106589183 | other | upstream | 3047656 | 14222199 ~ 14223019 (-) |
| G1666788 | NA | other | upstream | 3250430 | 14424973 ~ 14425314 (-) |
