LOC110498963 (LOC106589410)


Basic Information

Item Value
gene id LOC110498963
gene name LOC106589410
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 11458919 ~ 11483535 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036955769.1
AACAAGTACCAAAAATAGCACCTCCTCTTGTTCAGCACCCAAAGGACGAAAGTGCGAGATTCGCCTGTGTTGTCTATTATAACCAATTCTTACTGTCCATATTTGTGTAGAAACGTActgaacagttttttttttttgatgtgAGAAACCTATTTGGTGTCAAACATGCGTAAAAACCTACGCCATCCAAGCAGGGAACCGCCGAGAAAGGAATTATCGCCGCTCATCTGAGGCCAAACTcgcatattttgttttgtcaagtaaggaaacaaaacaaTATATCACCACGACGATACCCACTAGTCAGGGACCTAAAAAACATCTACATTCGTTTTACAGTTGGAAACCAGTTTGAAGGTATGGGGGCATTCCTGGACAAGCCTAAGACAGAGAAGCATACGGCCCATGGTGAGGGTAATGGGCTGCATTACGGCCTGAGCTCCATGCAGGGCTGGCGGGTGGAGATGGAGGATGCCCACACCGCCATGGTGGGCCTGCCCCACGGCCTCACCGACTGGTCCTTCTTCGCCGTCTACGACGGGCATGCCGGCTCCCGCGTCGCCAATTACTGCTCCGCCCACCTACTGGAGCACATCCTATCAGGGGGGGCGGAGTTCACCCCGGGGACGGGCTCAGTGGAGGGTGTAAAGGATGGGATCCGCACGGGCTTCCTGAAGATCGACGAATACATGCGCAGCTTCACGGACCTGCGACAAGGGCTGGACCGCAGCGGCTCCACGGCGGTGGGTGTGCTGCTAAGCCCTTTCCACCTCTACTTCATAAACTGTGGCGACTCCCGGGCCGTGCTGAGCCGAGATGGACGAGTTGGATTCTCTACACAGGACCACAAGCCGTGCAACCCCAGAGAGAAGGAGCGTATCCAGAACGCAGGGGGGTCAGTGATGATCCAGAGGGTCAACGGTTCCCTAGCCGTGTCCAGAGCCCTGGGGGACTATGACTACAAGTGTGTGGATGGGAAGGGTCCCACAGAACAACTGGTCAGCCCAGagccagaggtgtgtgtgttggagcgTGCTGCGGAGGGGGATGAGTTTGTGGTGCTGGCGTGCGACGGGATCTGGGACGTGATGTCCAACGAGGAGCTGTGCGAGTTCGTCAGGTCCCGGCTACAAGTGTTTGACGACCTGGAAAGAGTCTGCACTGCCGTGGTGGACACCTGTCTGCACAAGGGCAGCAGAGATAACATGAGTGTGGTGTTGGTGACTTTACCGGGAGCTCCCAAGGTGTCTGAGGAAGCcctgaagagagaggaggacctGGACAAATACCTGGAGACACGTGTAGAGGATTTGCTGGGTAGctgtggagaggagggggttccTGACCTGGTGTCTGTTCTGAGGAACATCGCCTCTGAGAACATCCCCAACCTTCCACCTGGAGGAGGCCTGGCCTGCAAgCGCAGTGTGATCGAGGCGGTGTACAGCAGGCTGAACCCacaaagagaagaggaagggTGTGATCTGGAGGACCCCTGGTAGTCGTGGTAACTGCGACCCGGTCTCCTCCTGTGATTGGTCTAGCCACCCAGAGGGAGAATTGCCTCCTCCACGTGCCCAGTGgacgacgtgtgtgtgtgtgcgtgtgaggatgaacacacccacacacacactctgctttTCCTTGGGAGGAGTGTGTCTTTGGAGGTGTTGCGGTTGTTGTAAGGACTGATGAAGAGTCTGGATGGTAGACGTTTTTTACCATCCAGGTTTTCTggtgttacattttttttgttgttgttgacattgaTCACCTGACTACATGGACATGACCTGGGATGgatttatgtgtttgtgtgtgtgagagagaaaggaaattTGGAGGTGGGGATTGGGACCCAGACTGGTTCAATCTGGTACTTGTCTTGGACTCTGTGCTGCCTGAAAACCCCAACcgcccgaacacacacacacacacacacaccctaaaacCTGACACACCAAGCCCTGCAAATGTacattggggagaacaagtatttgataacctgcaaaatcggcagtgtttcctacttacaaagcatgtagaggtctgtaatttttatcataggtacacttcaaatgt
>XM_036955768.1
ACAAGTACCAAAAATAGCACCTCCTCTTGTTCAGCACCCAAAGGACGAAAGTGCGAGATTCGCCTGTGTTGTCTATTATAACCAATTCTTACTGTCCATATTTGTGTAGAAACGTActgaacagttttttttttttgatgtgAGAAACCTATTTGGTGTCAAACATGCGTAAAAACCTACGCCATCCAAGCAGGGAACCGCCGAGAAAGGAATTATCGCCGCTCATCTGAGGCCAAACTcgcatattttgttttgtcaagtaaggaaacaaaacaaTATATCACCACGACGATACCCACTAGTCAGGGACCTAAAAAACATCTACATTCGTTTTACAGTTGGAAACTTTGAAGGTATGGGGGCATTCCTGGACAAGCCTAAGACAGAGAAGCATACGGCCCATGGTGAGGGTAATGGGCTGCATTACGGCCTGAGCTCCATGCAGGGCTGGCGGGTGGAGATGGAGGATGCCCACACCGCCATGGTGGGCCTGCCCCACGGCCTCACCGACTGGTCCTTCTTCGCCGTCTACGACGGGCATGCCGGCTCCCGCGTCGCCAATTACTGCTCCGCCCACCTACTGGAGCACATCCTATCAGGGGGGGCGGAGTTCACCCCGGGGACGGGCTCAGTGGAGGGTGTAAAGGATGGGATCCGCACGGGCTTCCTGAAGATCGACGAATACATGCGCAGCTTCACGGACCTGCGACAAGGGCTGGACCGCAGCGGCTCCACGGCGGTGGGTGTGCTGCTAAGCCCTTTCCACCTCTACTTCATAAACTGTGGCGACTCCCGGGCCGTGCTGAGCCGAGATGGACGAGTTGGATTCTCTACACAGGACCACAAGCCGTGCAACCCCAGAGAGAAGGAGCGTATCCAGAACGCAGGGGGGTCAGTGATGATCCAGAGGGTCAACGGTTCCCTAGCCGTGTCCAGAGCCCTGGGGGACTATGACTACAAGTGTGTGGATGGGAAGGGTCCCACAGAACAACTGGTCAGCCCAGagccagaggtgtgtgtgttggagcgTGCTGCGGAGGGGGATGAGTTTGTGGTGCTGGCGTGCGACGGGATCTGGGACGTGATGTCCAACGAGGAGCTGTGCGAGTTCGTCAGGTCCCGGCTACAAGTGTTTGACGACCTGGAAAGAGTCTGCACTGCCGTGGTGGACACCTGTCTGCACAAGGGCAGCAGAGATAACATGAGTGTGGTGTTGGTGACTTTACCGGGAGCTCCCAAGGTGTCTGAGGAAGCcctgaagagagaggaggacctGGACAAATACCTGGAGACACGTGTAGAGGATTTGCTGGGTAGctgtggagaggagggggttccTGACCTGGTGTCTGTTCTGAGGAACATCGCCTCTGAGAACATCCCCAACCTTCCACCTGGAGGAGGCCTGGCCTGCAAgCGCAGTGTGATCGAGGCGGTGTACAGCAGGCTGAACCCacaaagagaagaggaagggGCCTGTgttggaggtggaggagaggaggagagtgaggagggaggaggcagCAGTACGGCGACCAACCTCTTGGAGGCGCTGCGTCAGTTCCGCCTGCACCACCGGGGGCAGTATCGCTCGGTGCTGGAGGAAGCCCTGGCAGTCTACCGTCTGCCTGGGGAGAATACAGCCGACATGGGAGAGGAATCCTCCTCTTTTACCGCTGACGACCTCCCTGACTCCCCCCggccctcacccccctctccccctccctcacccgTCGTCATCGAGACGCCCTCATCCCCGGAGACAGAGAAAAGCAAAGACACGCCCTCTCCAAACATCGACCAACAACCACCTCCGGCTGCAGACATCGACCAACCTGAACCTCCAGCGGTAGACACTGACCAACCTGAACCTCCGGCGGCAGACCTCGTCCCACTATATCCTCCAGCTGCTGAGCTTCGCCAACCAGATCCACCCCCCTCCTAATTCACCTCTgatctctgttgttgttgttgacccccccccccccaaatctagTCTAGTCCATGCGTGCTCTCACAGCGTCTAGTCCATCCGTGCTCTCACAAACGCCATAATGGGTAGATATAAAGATGAGTGGTCTAAGTCAATGGACCGATCATGTCTGGACCtctacctgacagagagagaaggccGACTGGACTGTCCATATAAAAACACAAGTTCCCATAAACCACCTATACCTGTTCTCACAGtacccacacacaacacactcactctctgtgtgtctctgtgtgtctgtgtgtctctgtttgcctgtctctgtctctctgcgtcTGCCTGcgtgtctctctgtccgtccgagagagagagagacgggtcttAGCAGCcagctgaggtgtgtgtgtgtgtgtgtgtgtgtttgtttggtaGAATTTGTTAAGGTGTGTGTCCACTACAGTACTGTAACTACTTCAAAATTCTGGAACAGTATACAAAGTTCTAAAAAGTTCAAAATACCAAAgtaaaaaaagtgtgtgtgtcattgtattgCTAAAGACTGAGTTGTATTTCTCTCTGATGAATGGTGGCACTTACTGTATGCAACAagacacaattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgctgaatcTGTTCCATACAGCAATATGTGAATGAATAAAATAATCAATAAAAGTGATTTGAATTAATAATAA
>XM_036955767.1
AACAAGTACCAAAAATAGCACCTCCTCTTGTTCAGCACCCAAAGGACGAAAGTGCGAGATTCGCCTGTGTTGTCTATTATAACCAATTCTTACTGTCCATATTTGTGTAGAAACGTActgaacagttttttttttttgatgtgAGAAACCTATTTGGTGTCAAACATGCGTAAAAACCTACGCCATCCAAGCAGGGAACCGCCGAGAAAGGAATTATCGCCGCTCATCTGAGGCCAAACTcgcatattttgttttgtcaagtaaggaaacaaaacaaTATATCACCACGACGATACCCACTAGTCAGGGACCTAAAAAACATCTACATTCGTTTTACAGTTGGAAACCAGTTTGAAGGTATGGGGGCATTCCTGGACAAGCCTAAGACAGAGAAGCATACGGCCCATGGTGAGGGTAATGGGCTGCATTACGGCCTGAGCTCCATGCAGGGCTGGCGGGTGGAGATGGAGGATGCCCACACCGCCATGGTGGGCCTGCCCCACGGCCTCACCGACTGGTCCTTCTTCGCCGTCTACGACGGGCATGCCGGCTCCCGCGTCGCCAATTACTGCTCCGCCCACCTACTGGAGCACATCCTATCAGGGGGGGCGGAGTTCACCCCGGGGACGGGCTCAGTGGAGGGTGTAAAGGATGGGATCCGCACGGGCTTCCTGAAGATCGACGAATACATGCGCAGCTTCACGGACCTGCGACAAGGGCTGGACCGCAGCGGCTCCACGGCGGTGGGTGTGCTGCTAAGCCCTTTCCACCTCTACTTCATAAACTGTGGCGACTCCCGGGCCGTGCTGAGCCGAGATGGACGAGTTGGATTCTCTACACAGGACCACAAGCCGTGCAACCCCAGAGAGAAGGAGCGTATCCAGAACGCAGGGGGGTCAGTGATGATCCAGAGGGTCAACGGTTCCCTAGCCGTGTCCAGAGCCCTGGGGGACTATGACTACAAGTGTGTGGATGGGAAGGGTCCCACAGAACAACTGGTCAGCCCAGagccagaggtgtgtgtgttggagcgTGCTGCGGAGGGGGATGAGTTTGTGGTGCTGGCGTGCGACGGGATCTGGGACGTGATGTCCAACGAGGAGCTGTGCGAGTTCGTCAGGTCCCGGCTACAAGTGTTTGACGACCTGGAAAGAGTCTGCACTGCCGTGGTGGACACCTGTCTGCACAAGGGCAGCAGAGATAACATGAGTGTGGTGTTGGTGACTTTACCGGGAGCTCCCAAGGTGTCTGAGGAAGCcctgaagagagaggaggacctGGACAAATACCTGGAGACACGTGTAGAGGATTTGCTGGGTAGctgtggagaggagggggttccTGACCTGGTGTCTGTTCTGAGGAACATCGCCTCTGAGAACATCCCCAACCTTCCACCTGGAGGAGGCCTGGCCTGCAAgCGCAGTGTGATCGAGGCGGTGTACAGCAGGCTGAACCCacaaagagaagaggaagggGCCTGTgttggaggtggaggagaggaggagagtgaggagggaggaggcagCAGTACGGCGACCAACCTCTTGGAGGCGCTGCGTCAGTTCCGCCTGCACCACCGGGGGCAGTATCGCTCGGTGCTGGAGGAAGCCCTGGCAGTCTACCGTCTGCCTGGGGAGAATACAGCCGACATGGGAGAGGAATCCTCCTCTTTTACCGCTGACGACCTCCCTGACTCCCCCCggccctcacccccctctccccctccctcacccgTCGTCATCGAGACGCCCTCATCCCCGGAGACAGAGAAAAGCAAAGACACGCCCTCTCCAAACATCGACCAACAACCACCTCCGGCTGCAGACATCGACCAACCTGAACCTCCAGCGGTAGACACTGACCAACCTGAACCTCCGGCGGCAGACCTCGTCCCACTATATCCTCCAGCTGCTGAGCTTCGCCAACCAGATCCACCCCCCTCCTAATTCACCTCTgatctctgttgttgttgttgacccccccccccccaaatctagTCTAGTCCATGCGTGCTCTCACAGCGTCTAGTCCATCCGTGCTCTCACAAACGCCATAATGGGTAGATATAAAGATGAGTGGTCTAAGTCAATGGACCGATCATGTCTGGACCtctacctgacagagagagaaggccGACTGGACTGTCCATATAAAAACACAAGTTCCCATAAACCACCTATACCTGTTCTCACAGtacccacacacaacacactcactctctgtgtgtctctgtgtgtctgtgtgtctctgtttgcctgtctctgtctctctgcgtcTGCCTGcgtgtctctctgtccgtccgagagagagagagacgggtcttAGCAGCcagctgaggtgtgtgtgtgtgtgtgtgtgtgtttgtttggtaGAATTTGTTAAGGTGTGTGTCCACTACAGTACTGTAACTACTTCAAAATTCTGGAACAGTATACAAAGTTCTAAAAAGTTCAAAATACCAAAgtaaaaaaagtgtgtgtgtcattgtattgCTAAAGACTGAGTTGTATTTCTCTCTGATGAATGGTGGCACTTACTGTATGCAACAagacacaattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgctgaatcTGTTCCATACAGCAATATGTGAATGAATAAAATAATCAATAAAAGTGATTTGAATTAATAATAA

Function

NR:

description
protein phosphatase 1B-like

GO: NA

KEGG:

id description
K04461 PPM1B, PP2CB; protein phosphatase 1B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036955769.1 False 2082 mRNA 0.53 8 11458919 11483535
XM_036955768.1 False 2663 mRNA 0.53 8 11459987 11483534
XM_036955767.1 True 2667 mRNA 0.53 8 11459987 11483535
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110498742 LOC106589411 coding downstream 23093 11417415 ~ 11435826 (-)
LOC110498962 NA coding downstream 42033 11413724 ~ 11416886 (-)
LOC110498961 LOC106589413 coding downstream 100794 11348007 ~ 11358125 (-)
LOC110498960 LOC106589415 coding downstream 115723 11336117 ~ 11343196 (-)
LOC110498959 LOC106589414 coding downstream 124331 11300788 ~ 11334588 (-)
trnai-uau-46 NA coding upstream 3976 11487511 ~ 11487605 (-)
LOC110498966 LOC106589409 coding upstream 8518 11492053 ~ 11498388 (-)
LOC110498965 LOC106589409 coding upstream 15005 11498540 ~ 11509265 (-)
LOC110498969 pigf coding upstream 63908 11547443 ~ 11549694 (-)
LOC110498968 LOC106589406 coding upstream 71724 11555259 ~ 11564924 (-)
G1663221 NA non-coding downstream 10852 11447847 ~ 11448067 (-)
G1663159 NA non-coding downstream 112857 11345325 ~ 11346062 (-)
G1663128 NA non-coding downstream 179827 11278746 ~ 11279092 (-)
LOC110511226 NA non-coding downstream 186764 11263195 ~ 11272173 (-)
G1662995 NA non-coding downstream 189053 11264400 ~ 11269866 (-)
G1663261 NA non-coding upstream 53366 11536901 ~ 11539243 (-)
G1663265 NA non-coding upstream 60109 11543644 ~ 11544011 (-)
G1663266 NA non-coding upstream 61715 11545250 ~ 11545600 (-)
fshr fshr non-coding upstream 141517 11624909 ~ 11634813 (-)
G1663311 NA non-coding upstream 157660 11641195 ~ 11641407 (-)
LOC110498953 NA other downstream 300143 11121913 ~ 11158776 (-)
G1662039 NA other downstream 981734 10476963 ~ 10477185 (-)
G1661001 LOC106589450 other downstream 1998804 9422783 ~ 9460115 (-)
G1661023 NA other downstream 2057972 9399117 ~ 9400947 (-)
LOC110498913 h3f3b other downstream 3069665 8386968 ~ 8389308 (-)
G1663264 NA other upstream 59081 11542616 ~ 11543091 (-)
G1664239 NA other upstream 766615 12250150 ~ 12251106 (-)
G1665402 LOC106589366 other upstream 1917746 13401281 ~ 13407377 (-)
G1666656 LOC106589183 other upstream 2738664 14222199 ~ 14223019 (-)
G1666788 NA other upstream 2941438 14424973 ~ 14425314 (-)

Expression

LOC110498963(LOC106589410) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 40.
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LOC110498963(LOC106589410) Expression in each Bioproject

Bar chart with 21 bars.
LOC110498963(LOC106589410) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
End of interactive chart.

Co-expression Network