LOC110498983 (LOC106589392)


Basic Information

Item Value
gene id LOC110498983
gene name LOC106589392
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 12447747 ~ 12458329 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021575753.2
TAAGAGTCGGAAGCGCGAGGTGAGTGTCACACCAGTCCGTCCACATGAGCAAACGACATCTAAGAAGATGGTATTGAAGGAGATTCCAACTGAAAGTGTTGCCCGGCCCTTGGGCCGGAATGAAGTTATTGGTTTACTCTTCCGACTGACTATATTTGGTGCAGTCACCTACTTCACCATAAAGTGGATGGTTGATGCCATTGATCCCACAAGGAAACAGAAAATGGAAGCACAGAAACAGGCAGAGAAACTCATGAAGCAGATTGGTGTGCAGAATGTCAAGCTCTCAGAGTATGAGATGAGCATCGCAGCACATCTGGTGGACCCACTGACCATGCAGATCACATGGAGTGATATTGCTGGCCTAGATGAGGTCATCACTGAGCTGAAAGACACTGTCATACTTCCCATCCAGAAGAGACACTTGTTTGAGGGATCCAGACTGCTTCAGCCACCAAAAGGTGTGCTGCTGTATGGACCACCTGGCTGTGGAAAGACGCTGATTGCCAAAGCAACTGCCAAGGAAGCTGGCTTCCGCTTCATCAACCTGCAGCCTTCCACCCTCACAGACAAGTGGTATGGAGAGTCCCAGAAACTGGCTGCTGCCGTCTTCTCTTTAGCCATTAAGCTCCAGCCCTCAATCATCTTCATCGATGAAATTGACTCTTTCCTGAGAAGCCGTTCCAGCTCTGACCACGAGGCCACAGCCATGATGAAGGCTCAGTTCATGAGCTTGTGGGATGGGCTGGAAACTGACTACAACTGCCAGGTCATCATTATGGGGGCCACTAACCGTCCACAGGATCTCGACTCTGCCATTCTGAGGAGAATGCCCACAAGATTTCACATTAATCAGCCTAATGTCAGGCAGAGGGAAGAAATCTTGAAACTCATATTGGACAATGAAAATGTTGAGCCCACTGTTGACTTTGTTGAGATAGCGAAGGAGACTGATGGATTCTCAGGGAGTGACCTCCGAGAGTTGTGTAGGGACGCTGCTCTGCTCTGCGTGCGGGACTTTGTCCATAACACCCATGCCAATGACAGtcTAGAAGAGGACTGCATCCGGTCCATCCAGCAACAAGACATGCAGAGGGCCATCCAGAAGATGAGGAAGTCCAAGTCTGCAGGGGGACAGAGCGTACTGATGCATGCTGCTATGGATTGAGACTCGATGTGCAAAAGAGAACTATTAAGCCTCTGGATATGTTTTCCTTATGTATAAAGAGTACTGTTTGAAACCATGAAGAGATGCACACAATGTAATGTCTATCATAGTATCACTTTGTAACATTTTTACTTCAACAATTAATTTAGAACATTTGgtttgttgcatttatattaaATATAATGCAATTTATTATCTTGGAAGTTAGGAGTTACATAATACTTGTATTGGTGTTCGTTTCTTATCCATATCTGCTCAACCGAGGTCTCACCGAAGCATGCTCTCAGACTGCAAAATATGAGCACAGCTTTGGATCCGTTCAGGTTTGACAATACATTTGCTCGTCCTTATTACACACACAGCAATATTGATTTAGCCTTGGGCCTTTCACCTTCCATTTTTATCTGAACATGAAATGTTTCttttggtactgtatatttagaaGTATTATTCTTTTTTCAGGAAAGCTGTTAAACTAGCTCGTGTTACATCTGTATTAAAATATGCTACTTTTAGTAGGCACTGTCATCCTTTGACTATTAGCTAAATGTTATGCAATGAGTGGTTCTCGGATGTCTGAATTATATGCGTTAGATCATACATTTTATCATGCATGATAAAAGTTTCTATATCAGAAAGAGCAATTCAACTTTTCACCAAAAGTGAATTATCGCTGTGGATGTTGTGAAGAGAACATGATGCAACGATGCTTGAGGTAAAGATTACAGTGTCATGTCCTTCCATTTCCTTCTAGTAAATACATAAGGGTAGGTTAGAGCTGTAATATCGTGAGCTGCTAATGTTAAGGTATTATTCATTTATTATTCAAGTTGACTTTTGTTTTTAAAACTTCAATAGATCAGGAAACCTGTGTGACAGGTTGTGTGTCTGTTGTGCTTTCAGGTCCTTTTTATGTCCCCTTGTCAGTCCAGGTTTCATTAACAGTAGAATATAGAAACTGCTTGTGAATACTTCCTGTGCCGTTTGCCTCTTATGCTGCATTCatgtgctagtcggaactaggaaactcggaaatgtcagacttgctaactggttgtagtttaataaccagttagcaagtcagaAAATGTCACGAGATTCCTAGTTCTGACTAGCACGTGAACACAGCATTATAGTTTCTGTTTATCTCTTATGATGACCAGGATGCTTAATTGTTGGGTGATTGATTATTTATTCATGACAAACTTCTAGTATCTCCCACAAGCAACAGCCATTAGAACTTGTAAATCTATTGAATGTGTGATTGCCAATTCATAGTTTACTTGAATGACAAGTTCTGTGGACATATAGTTTTGGGGATTGGTGGAAAGTTTTGTTTAGATAAAATATGCTtgcttttcttttttcttttaaaTAATGGTATTGTTGATAAGCTCCTGATTGTGACTAATATGTTAATTGAATAATGTTTTTTCAGTTAACAAATCGGCCAATGTGCTTCGTTTCTATTACCCTGCATTCTGGTGTCTGCTAAAATATATTACACAAATACA
>XM_021575752.2
TATTCCAAAACAGTAGGGGGCACCTATCACGCCGAGCCTCATGCTGACAACTCCCGGACAAGAGTAAGAGTCGGAAGCGCGAGACATCTAAGAAGATGGTATTGAAGGAGATTCCAACTGAAAGTGTTGCCCGGCCCTTGGGCCGGAATGAAGTTATTGGTTTACTCTTCCGACTGACTATATTTGGTGCAGTCACCTACTTCACCATAAAGTGGATGGTTGATGCCATTGATCCCACAAGGAAACAGAAAATGGAAGCACAGAAACAGGCAGAGAAACTCATGAAGCAGATTGGTGTGCAGAATGTCAAGCTCTCAGAGTATGAGATGAGCATCGCAGCACATCTGGTGGACCCACTGACCATGCAGATCACATGGAGTGATATTGCTGGCCTAGATGAGGTCATCACTGAGCTGAAAGACACTGTCATACTTCCCATCCAGAAGAGACACTTGTTTGAGGGATCCAGACTGCTTCAGCCACCAAAAGGTGTGCTGCTGTATGGACCACCTGGCTGTGGAAAGACGCTGATTGCCAAAGCAACTGCCAAGGAAGCTGGCTTCCGCTTCATCAACCTGCAGCCTTCCACCCTCACAGACAAGTGGTATGGAGAGTCCCAGAAACTGGCTGCTGCCGTCTTCTCTTTAGCCATTAAGCTCCAGCCCTCAATCATCTTCATCGATGAAATTGACTCTTTCCTGAGAAGCCGTTCCAGCTCTGACCACGAGGCCACAGCCATGATGAAGGCTCAGTTCATGAGCTTGTGGGATGGGCTGGAAACTGACTACAACTGCCAGGTCATCATTATGGGGGCCACTAACCGTCCACAGGATCTCGACTCTGCCATTCTGAGGAGAATGCCCACAAGATTTCACATTAATCAGCCTAATGTCAGGCAGAGGGAAGAAATCTTGAAACTCATATTGGACAATGAAAATGTTGAGCCCACTGTTGACTTTGTTGAGATAGCGAAGGAGACTGATGGATTCTCAGGGAGTGACCTCCGAGAGTTGTGTAGGGACGCTGCTCTGCTCTGCGTGCGGGACTTTGTCCATAACACCCATGCCAATGACAGtcTAGAAGAGGACTGCATCCGGTCCATCCAGCAACAAGACATGCAGAGGGCCATCCAGAAGATGAGGAAGTCCAAGTCTGCAGGGGGACAGAGCGTACTGATGCATGCTGCTATGGATTGAGACTCGATGTGCAAAAGAGAACTATTAAGCCTCTGGATATGTTTTCCTTATGTATAAAGAGTACTGTTTGAAACCATGAAGAGATGCACACAATGTAATGTCTATCATAGTATCACTTTGTAACATTTTTACTTCAACAATTAATTTAGAACATTTGgtttgttgcatttatattaaATATAATGCAATTTATTATCTTGGAAGTTAGGAGTTACATAATACTTGTATTGGTGTTCGTTTCTTATCCATATCTGCTCAACCGAGGTCTCACCGAAGCATGCTCTCAGACTGCAAAATATGAGCACAGCTTTGGATCCGTTCAGGTTTGACAATACATTTGCTCGTCCTTATTACACACACAGCAATATTGATTTAGCCTTGGGCCTTTCACCTTCCATTTTTATCTGAACATGAAATGTTTCttttggtactgtatatttagaaGTATTATTCTTTTTTCAGGAAAGCTGTTAAACTAGCTCGTGTTACATCTGTATTAAAATATGCTACTTTTAGTAGGCACTGTCATCCTTTGACTATTAGCTAAATGTTATGCAATGAGTGGTTCTCGGATGTCTGAATTATATGCGTTAGATCATACATTTTATCATGCATGATAAAAGTTTCTATATCAGAAAGAGCAATTCAACTTTTCACCAAAAGTGAATTATCGCTGTGGATGTTGTGAAGAGAACATGATGCAACGATGCTTGAGGTAAAGATTACAGTGTCATGTCCTTCCATTTCCTTCTAGTAAATACATAAGGGTAGGTTAGAGCTGTAATATCGTGAGCTGCTAATGTTAAGGTATTATTCATTTATTATTCAAGTTGACTTTTGTTTTTAAAACTTCAATAGATCAGGAAACCTGTGTGACAGGTTGTGTGTCTGTTGTGCTTTCAGGTCCTTTTTATGTCCCCTTGTCAGTCCAGGTTTCATTAACAGTAGAATATAGAAACTGCTTGTGAATACTTCCTGTGCCGTTTGCCTCTTATGCTGCATTCatgtgctagtcggaactaggaaactcggaaatgtcagacttgctaactggttgtagtttaataaccagttagcaagtcagaAAATGTCACGAGATTCCTAGTTCTGACTAGCACGTGAACACAGCATTATAGTTTCTGTTTATCTCTTATGATGACCAGGATGCTTAATTGTTGGGTGATTGATTATTTATTCATGACAAACTTCTAGTATCTCCCACAAGCAACAGCCATTAGAACTTGTAAATCTATTGAATGTGTGATTGCCAATTCATAGTTTACTTGAATGACAAGTTCTGTGGACATATAGTTTTGGGGATTGGTGGAAAGTTTTGTTTAGATAAAATATGCTtgcttttcttttttcttttaaaTAATGGTATTGTTGATAAGCTCCTGATTGTGACTAATATGTTAATTGAATAATGTTTTTTCAGTTAACAAATCGGCCAATGTGCTTCGTTTCTATTACCCTGCATTCTGGTGTCTGCTAAAATATATTACACAAATACA
>XM_021575754.2
CTATTCCAAAACAGTAGGGGGCACCTATCACGCCGAGCCTCATGCTGACAACTCCCGGACAAGAGTAAGAGTCGGAAGCGCGAGACATCTAAGAAGATGGTATTGAAGGAGATTCCAACTGAAAGTGTTGCCCGGCCCTTGGGCCGGAATGAAGTTATTGGTTTACTCTTCCGACTGACTATATTTGGTGCAGTCACCTACTTCACCATAAAGTGGATGGTTGATGCCATTGATCCCACAAGGAAACAGAAAATGGAAGCACAGAAACAGAATGTCAAGCTCTCAGAGTATGAGATGAGCATCGCAGCACATCTGGTGGACCCACTGACCATGCAGATCACATGGAGTGATATTGCTGGCCTAGATGAGGTCATCACTGAGCTGAAAGACACTGTCATACTTCCCATCCAGAAGAGACACTTGTTTGAGGGATCCAGACTGCTTCAGCCACCAAAAGGTGTGCTGCTGTATGGACCACCTGGCTGTGGAAAGACGCTGATTGCCAAAGCAACTGCCAAGGAAGCTGGCTTCCGCTTCATCAACCTGCAGCCTTCCACCCTCACAGACAAGTGGTATGGAGAGTCCCAGAAACTGGCTGCTGCCGTCTTCTCTTTAGCCATTAAGCTCCAGCCCTCAATCATCTTCATCGATGAAATTGACTCTTTCCTGAGAAGCCGTTCCAGCTCTGACCACGAGGCCACAGCCATGATGAAGGCTCAGTTCATGAGCTTGTGGGATGGGCTGGAAACTGACTACAACTGCCAGGTCATCATTATGGGGGCCACTAACCGTCCACAGGATCTCGACTCTGCCATTCTGAGGAGAATGCCCACAAGATTTCACATTAATCAGCCTAATGTCAGGCAGAGGGAAGAAATCTTGAAACTCATATTGGACAATGAAAATGTTGAGCCCACTGTTGACTTTGTTGAGATAGCGAAGGAGACTGATGGATTCTCAGGGAGTGACCTCCGAGAGTTGTGTAGGGACGCTGCTCTGCTCTGCGTGCGGGACTTTGTCCATAACACCCATGCCAATGACAGtcTAGAAGAGGACTGCATCCGGTCCATCCAGCAACAAGACATGCAGAGGGCCATCCAGAAGATGAGGAAGTCCAAGTCTGCAGGGGGACAGAGCGTACTGATGCATGCTGCTATGGATTGAGACTCGATGTGCAAAAGAGAACTATTAAGCCTCTGGATATGTTTTCCTTATGTATAAAGAGTACTGTTTGAAACCATGAAGAGATGCACACAATGTAATGTCTATCATAGTATCACTTTGTAACATTTTTACTTCAACAATTAATTTAGAACATTTGgtttgttgcatttatattaaATATAATGCAATTTATTATCTTGGAAGTTAGGAGTTACATAATACTTGTATTGGTGTTCGTTTCTTATCCATATCTGCTCAACCGAGGTCTCACCGAAGCATGCTCTCAGACTGCAAAATATGAGCACAGCTTTGGATCCGTTCAGGTTTGACAATACATTTGCTCGTCCTTATTACACACACAGCAATATTGATTTAGCCTTGGGCCTTTCACCTTCCATTTTTATCTGAACATGAAATGTTTCttttggtactgtatatttagaaGTATTATTCTTTTTTCAGGAAAGCTGTTAAACTAGCTCGTGTTACATCTGTATTAAAATATGCTACTTTTAGTAGGCACTGTCATCCTTTGACTATTAGCTAAATGTTATGCAATGAGTGGTTCTCGGATGTCTGAATTATATGCGTTAGATCATACATTTTATCATGCATGATAAAAGTTTCTATATCAGAAAGAGCAATTCAACTTTTCACCAAAAGTGAATTATCGCTGTGGATGTTGTGAAGAGAACATGATGCAACGATGCTTGAGGTAAAGATTACAGTGTCATGTCCTTCCATTTCCTTCTAGTAAATACATAAGGGTAGGTTAGAGCTGTAATATCGTGAGCTGCTAATGTTAAGGTATTATTCATTTATTATTCAAGTTGACTTTTGTTTTTAAAACTTCAATAGATCAGGAAACCTGTGTGACAGGTTGTGTGTCTGTTGTGCTTTCAGGTCCTTTTTATGTCCCCTTGTCAGTCCAGGTTTCATTAACAGTAGAATATAGAAACTGCTTGTGAATACTTCCTGTGCCGTTTGCCTCTTATGCTGCATTCatgtgctagtcggaactaggaaactcggaaatgtcagacttgctaactggttgtagtttaataaccagttagcaagtcagaAAATGTCACGAGATTCCTAGTTCTGACTAGCACGTGAACACAGCATTATAGTTTCTGTTTATCTCTTATGATGACCAGGATGCTTAATTGTTGGGTGATTGATTATTTATTCATGACAAACTTCTAGTATCTCCCACAAGCAACAGCCATTAGAACTTGTAAATCTATTGAATGTGTGATTGCCAATTCATAGTTTACTTGAATGACAAGTTCTGTGGACATATAGTTTTGGGGATTGGTGGAAAGTTTTGTTTAGATAAAATATGCTtgcttttcttttttcttttaaaTAATGGTATTGTTGATAAGCTCCTGATTGTGACTAATATGTTAATTGAATAATGTTTTTTCAGTTAACAAATCGGCCAATGTGCTTCGTTTCTATTACCCTGCATTCTGGTGTCTGCTAAAATATATTACACAAATACA

Function

NR:

description
ATPase family AAA domain-containing protein 1-B isoform X2

GO: NA

KEGG:

id description
K22530 ATAD1; ATPase family AAA domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021575753.2 False 2682 mRNA 0.41 10 12447747 12458264
XM_021575752.2 False 2710 mRNA 0.41 10 12447747 12458328
XM_021575754.2 True 2678 mRNA 0.41 10 12447747 12458329

Neighbor

gene id symbol gene type direction distance location
sgms1 LOC106589394 coding downstream 44907 12388383 ~ 12402840 (-)
asah2 asah2 coding downstream 59886 12371574 ~ 12387861 (-)
LOC110498977 LOC106589397 coding downstream 100221 12178492 ~ 12347526 (-)
LOC110498976 LOC106589228 coding downstream 272939 12172612 ~ 12174808 (-)
nrxn1a LOC106589402 coding downstream 731674 11648480 ~ 11716073 (-)
LOC110498987 LOC106589389 coding upstream 63546 12521875 ~ 12579704 (-)
LOC110498989 acta2 coding upstream 161137 12619466 ~ 12624986 (-)
LOC110498990 LOC106589227 coding upstream 176697 12635026 ~ 12636306 (-)
LOC110498991 LOC106589227 coding upstream 198768 12657097 ~ 12658367 (-)
LOC110498992 LOC106589385 coding upstream 234734 12693063 ~ 12728120 (-)
G1664361 LOC106589393 non-coding downstream 12316 12434419 ~ 12435431 (-)
G1664327 NA non-coding downstream 51873 12374842 ~ 12395874 (-)
G1664239 NA non-coding downstream 196641 12250150 ~ 12251106 (-)
G1664183 NA non-coding downstream 269953 12177492 ~ 12177794 (-)
G1663743 NA non-coding downstream 444778 11998179 ~ 12002969 (-)
G1664375 NA non-coding upstream 6703 12465032 ~ 12465465 (-)
G1664441 NA non-coding upstream 88905 12547234 ~ 12547507 (-)
G1664454 NA non-coding upstream 105974 12564303 ~ 12564528 (-)
G1664385 NA non-coding upstream 158814 12617143 ~ 12619002 (-)
G1663264 NA other downstream 904656 11542616 ~ 11543091 (-)
LOC110498953 NA other downstream 1288971 11121913 ~ 11158776 (-)
G1662039 NA other downstream 1970562 10476963 ~ 10477185 (-)
G1661001 LOC106589450 other downstream 2987632 9422783 ~ 9460115 (-)
G1665402 LOC106589366 other upstream 942952 13401281 ~ 13407377 (-)
G1666656 LOC106589183 other upstream 1763870 14222199 ~ 14223019 (-)
G1666788 NA other upstream 1966644 14424973 ~ 14425314 (-)
LOC110499033 LOC107708254 other upstream 2166026 14616546 ~ 14647860 (-)
G1667100 LOC106589344 other upstream 2432046 14890375 ~ 14897681 (-)

Expression

LOC110498983(LOC106589392) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
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LOC110498983(LOC106589392) Expression in each Bioproject

Bar chart with 21 bars.
LOC110498983(LOC106589392) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 750.
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Co-expression Network