LOC110499001 (LOC106589379)


Basic Information

Item Value
gene id LOC110499001
gene name LOC106589379
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 12944394 ~ 12948465 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021575782.2
tctcctccactccccatcctgCAACGTAACCCGAACCGACTAGACATTTCAGCACCTCGGGTAGGACGGTAGACGCGCAACGCTGAGCTGGTCGCTGATTGCTCGAGCGCTCGGCGTTTGGCTTTACCATTGGCTATCATCCGGGGTTAATTTGAAGCAGTATGCGAATCGTCTGGATGTACAGATGGAGACTGGAGAGCGCCTAAGCCATTGTCAGTACAGCTGGACTGCAGAGGTGAAGTGGGCGTGCCACGCAGCATTCAGGATCCTCAACCTTCATTGGAATggcaaaataaataataacacaattCTGTTCTTATGAAGTTAGTCCGTTTATTCATCAGCAACATTTAAGGTTTTTGACTGTTTCAACGCTTTCCAATGAATTGCACAAGGGTCCTACACATGTTGGACACCAGGCCGATGCCAGGTCCTATCATGCCAGTAGATGTAGCCATGAGGATCTGCCTGGCAAGCTCTCCGCCCCTCCGCAGCTTCTTCAGCACGTACGAGGACTGCCGATCGCGAAACCTGGCCAACTGCTACAAACCACTGAGGCCGTGCATCAGCTCCAAGCAGGAGGCAGAGGCCTCCAGCCTGGGATGGAAGAGTCCCAAGGCCAGCGGGAAGAAGCGGGTGGTCTTTGCCGATTCAAAAGGCATGTCCCTAACGGCCATCCATGTCTTCAAGGAGTTTGAGGAGGACCCACTGTCTGACCTGCAATTTGACCTGTCTGACCTGGCCAATGCCACCACCGGCCTGAAGGTCTCCATAGAGAAAAGTTTCACTCTGGACTTCCCTCAGCCTGCTGCAGATTATCTTGACTTCAGGAACCGGCTTAAGAAGAACCAAGTGTGTCTGGAGAACTGCACGCTCCAGGAACGGTCACTCACTGGCACTGTGAAAGTGAGGAATGTAAGCTTTGAGAAACTGGTTTCCATACGGATAACGTTTGACTCATGGGAAACACACACGGACGTTGCATGTACGTACCTGAACAATGTGTACGGTTGTTTGGACACGGACACCTTCGCTTTCACCGTCGACCTGCCAAGTTCTGTGCCCTCGCAGGAGCGTGTAGAGTTCTGCATATGCTTCACTACCCAGGATCAGACGTACTGGGACAACAACGATGAGAAGAACTACAAGTTGCTCCACAACGACACAGACGCTGACCAGACCAGCAATCCCATCATCCAGACCACCGCACCAGTTGAGTTCAAGAGAGACGGCAAGACGCCGGAGATGGAGTTTGACCAGTTCGGGAGCCCGAGAACGTCCAGTGGATTCTTCCCTGAATGGCAGAGCCGGGGACGCATAGAGACCACGGCCCCATACTGGTGAAGCAACAACAGGGCCTTTATGAGAAATCCACAAGATGCTCTCATAACATCAACTCCATTTGAGCGATAGCAGAACATTTAACTGTGTGTTCATATGAGAGTGCCGGCTGACCCCCCCTCAACAATGAAGATATAACCACAATCTGAACCGTTAAGATGACTCGAGCATCAACAGTTGCGGTCATTGTGGGGCCCTAAGAATGGACATCTTTGTTTTTGTCACTGCAGTGGAAAGGTTCAGAATGTGCTGTCTCTTCATGTTTTGTGGGTATATGTGAAGAAACAGAAATCTATAAACAACCATTTGATCCTGTTGTTGTCATCCAGTTAACCCCCTAATCATTGTGTACCTGTACACAACATAAAGCATTGTGGTAATATGCCATCATAGCCACACAAATATTATGATTTAAATTGCCTAGAATTAATTGCAAAGGGCATTAAAGGCTCAGATATAATAGTGTACTCAATTTATGCAGTGAACTAAAGCATTTTATAGATTtggaaatgtgttaaattatgATTTGTCGTAACATAGATGCCTTCCTCTGTGATGTTACTTTGATTGTCCGATAAGCAGTTTGTAATACAAGGGCGTTACTTCACCACCTGTATACACAGTGAGTAAAGCTGTTTTCAAAAACAGAAAGACCACTCCAAATTTGGGAGCCTGCACTTTAATTCATATTTTTAGCATTTAGGTTTAGCATTTTGTACATGGAGTGCTGTTTTGGTGAGTTTACAGTATATCAACATAATTAGCTTTACTTGCCCTATAATAGCTGAAACTATTCCTTGGTGTTAGATGTACGGCAAGCCACCAGAATATCAGTACAATGTAAGTAAGTCACGCGAATGTTGCCAGACATTGTTGCCAGAGCACACAACTTTGCACTGACCGGATTATGGTATGCCTTTAACATGTGAAAGAATAAGAAGTTGAAAGTGGAATCATTTGGTACAACATAAAGTACTTCATATTGAAGTTGTCTAAAATGCCATGGTACCATTTGATTGAAGACTTTCAggtgaaaaaaatgaaaagcaaTACAGGTAAATATGCATGACGATACCCCAGCATATTATCAATTAGTTGTAGGCCTAAATGGAGCACCTCCCTTTTTTCACTTAGCATTTTTCCTACCTCCATGGTATTTGTGAAAATCCTTCACATGCAAACACATTCAATGTGCTCTTCCTAACCTGCTCTTCAAACTGTTTGCTGCTACTGTAAGAATGTGCTGTTCTATCTTCAATGTGTTTCGTGGACCCATGCTATGTGAATTGTCTCCTATGGGTAAAAcaagggggaagagagtgagggCAGTGGGGATGTTATTTAAGGAATGTATGAGTAAGTAAGGGAAGTGCTTAAAAGGGAAATGAATGGAAAATAGGTCAGTGTTCGAGGGCTGTGCttgggactgaggcttcagtgtttACCAGACATTGGTGAACACTGTTTGCTACTTTGTTTCTGAAATGGAAATACGGCCGAATGTAAAGGGCTATGACACAAGCCGCGGTGTCTAACCACCAGCATGGTTTTTTCTACTGCAAGCAaaggtctctgtgtgtgagaaATGGTTTACTGTTTTCTGTGTTCCTTtcagaaataaagaaaaatctaATGTTTAAAGGGTGAAAGACTCCTGACTTTTCAATCTGGATTTTATGTATGAGATGATTATGTTGTCTAAGCAGTATTATCCAGCTGGGATCACTGTATGTGCAAAATACCATTGTCTAAAGCTCAAGTACAACATTCTTGATGACATTTTGTGACTAAACAGGGTGCACAAATTATAAAAGTGGTGTGACTCTTATTACAAAAGTATATTTATACAGGGGTGACCCGTTCAAACAATCAAGCA

Function

NR:

description
protein phosphatase 1 regulatory subunit 3C-B-like

GO:

id name namespace
GO:0005977 glycogen metabolic process biological_process

KEGG:

id description
K07189 PPP1R3; protein phosphatase 1 regulatory subunit 3A/B/C/D/E

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021575782.2 True 3217 mRNA 0.44 2 12944394 12948465

Neighbor

gene id symbol gene type direction distance location
LOC110498996 LOC106589382 coding downstream 132977 12805293 ~ 12811417 (-)
kif20bb LOC106589381 coding downstream 145611 12777485 ~ 12798783 (-)
LOC110498993 LOC106589384 coding downstream 200096 12733052 ~ 12744298 (-)
LOC110498992 LOC106589385 coding downstream 216274 12693063 ~ 12728120 (-)
LOC110498991 LOC106589227 coding downstream 286027 12657097 ~ 12658367 (-)
LOC110499003 LOC105025155 coding upstream 36950 12985415 ~ 12987990 (-)
plce1 plce1 coding upstream 108168 13056633 ~ 13137389 (-)
slc35g1 slc35g1 coding upstream 201056 13149521 ~ 13157107 (-)
LOC110499008 lgi1 coding upstream 209319 13157784 ~ 13170700 (-)
pde6c LOC106589370 coding upstream 259302 13207767 ~ 13252579 (-)
G1664830 NA non-coding downstream 8211 12935968 ~ 12936183 (-)
G1664827 NA non-coding downstream 10265 12933906 ~ 12934129 (-)
G1664803 NA non-coding downstream 48646 12894385 ~ 12895748 (-)
G1664767 NA non-coding downstream 85854 12858323 ~ 12858540 (-)
G1664764 NA non-coding downstream 90824 12852862 ~ 12853570 (-)
G1664851 NA non-coding upstream 35288 12983753 ~ 12983956 (-)
G1664859 NA non-coding upstream 39875 12988340 ~ 12988620 (-)
G1665167 NA non-coding upstream 53023 13001488 ~ 13001708 (-)
G1665168 NA non-coding upstream 57853 13006318 ~ 13006532 (-)
G1665184 NA non-coding upstream 80653 13029118 ~ 13029752 (-)
G1664239 NA other downstream 693288 12250150 ~ 12251106 (-)
G1663264 NA other downstream 1401303 11542616 ~ 11543091 (-)
LOC110498953 NA other downstream 1785618 11121913 ~ 11158776 (-)
G1662039 NA other downstream 2467209 10476963 ~ 10477185 (-)
G1661001 LOC106589450 other downstream 3484279 9422783 ~ 9460115 (-)
G1665402 LOC106589366 other upstream 452816 13401281 ~ 13407377 (-)
G1666656 LOC106589183 other upstream 1273734 14222199 ~ 14223019 (-)
G1666788 NA other upstream 1476508 14424973 ~ 14425314 (-)
LOC110499033 LOC107708254 other upstream 1675890 14616546 ~ 14647860 (-)
G1667100 LOC106589344 other upstream 1941910 14890375 ~ 14897681 (-)

Expression


Co-expression Network