slc35g1 (slc35g1)


Basic Information

Item Value
gene id slc35g1
gene name slc35g1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 13149521 ~ 13157107 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021575792.2
CATATTAAACCGGTCTGACAACTCACTCACCCTCAGACATAAAGGGTGTAAAATACATCCAAGGCATGCTCACCTGTTGCAGTTGCATTTTACAATGGGGGATTTGAAGGACAGTAATAGTATAGACGACAGAGTTCTATCGGCCGTTCCCTTTAGACAGGGGGACATTAAAGTTGTATTTCACAAAGTTGGCGATGACGACGAGGATGAACACACTACTGAGAGGATTAATTTACAAAGTAACAGTCATGATGAGCGGGGTAATGAAGAGGCAAGGACTAGAACAGTGGAAAGCAGTGCGAAGCAAAGATTATGTCCTCCCTTGTGTTGTAGAATTGGCGGCGGCGGGGATCCCATCTCAACGGACGCAGGAGACACAGTTGCCAAAGaGAATAAACATTGTCCAGGACTGGGCCTGTTTTATGGCCTGCTGGCAACAGTATTCTTCTCCATTATAGCTCTTCTGGTGAAGACAATAGATGGAGTCCATGCTGTAGAAATCAGTGCCTTTCGCTGCTTCTTCCAGATGCTGTTTGTGATGCCTATGCTTATCTATTACAAGACTGGCTTCCTTGGACCAAGAGACAAGCGGATCTATTTGGTGATGAGAGGGTTCTTGGGTTCCAACGCCATGATCCTATTGTTCTATGCAGTTCAGCAGATGCCCCTGGCTGATGCAACAGTCATCATGTTCAGCAACCCAGTGTTCACTGCCTTGTTAGCCTGGATCTTCCTCAAAGAGAAATGCACAATCTGGGACTGTGTCTTCACTGTCTTCACACTGGCTGGTGTCATAATGATAGCCAGGCCTCCCTTTATATTTGGTGCTCGtagagagggaatagagggagaCTACACCAATCATCTCAAGGGGACTATTGCAGCCTTCGGTGGAGCGTTAGGAGCAGCCTGCACTTTAGTTATACTCAGGAAAATGGGCAAAAGCGTCCACTACTATCTGTCTGTGTGGTACTATGCGGTCATTGGTTTCATTGAGTGTGTCATCACTTTGTTTATACTTGGTGAATGGACCATTCCATTCTGTGGGAGAGACAGGTGGGTCCTTATGCTGATAGCAATCCTGGGTATTGCTGGCCAAACGTTCCTCACCAAAGCACTTCAGATTGAGAAGGCCGGCCCTGTGGCCTTGATGAGGACCGTTGACGTGGTCCTGGCCTTTATTTTCCAGTTCTTTTTTTTCAACCGTAAGCCCACCATGTGGAGTCTCGGTGGGGCATGTTGTGTGGTCGTCAGTACCTGTGGTGTGGCTCTAAGGAAGTGGTACAGCAACACACACCCAAGAAAGAGCCGCGAACCACGCATCAGACAAATATTTGATTCCAGGAATAAATGAAAGGTTATCAATTAACATGATGTTAATGTTCAGCAGTCAAGAGTGTTATTTAAACCAAAGAAGCAATATTACATCCAAATGTTACTGTGAGGTTTTGAGCACAAAACTGGAAATGTTTTAGTATTTACATCAACACACTTAGAAAAGAGGGTTCTTTGGTAAGGgtgatggttctatgtggaaccataaGGACTCAAAATAACCATTTGAGCTCTTCAATGGTTCTTTGCCGTTCAGAAAACGGTGCTTTAATCTTTTAGTGATAATTCAAATGTAGGGGAGGTGGCTCATTCTAATATTTTGGGGCGTGGCTTTCTCACAGCTCTTTTTGTGCAGCCGAGAGTGAATGTCATTCCAGTTGACATAATCTGTTGTATTATGTCACTGCATGTTAAATATGACTGGCCAGTAATAGTGTCTTGTGAGAGACTTATGTAAGGCCTCGTGTCAACTGTTGACTAAATCTCAATTATCTCCTCAGGGACCACCCAGCCGgtccagagctagcacacctgattcaacttgtaaATGAACACAATATTAAGACCCATGTCATTTTAAAGGTAATATAATATGGCTAACCCTCTTTATAGCACCATaaaggttccatttagaacctcaTGAACATGGTAGAACCTTCAAAAAGGGTTCCACTATGGTTACAAGACAAATTACCCTTATTTGGCAGTGGcactatatacggtgccttcagaaagtattcataccccttgacttattccacaatttgttgtgttacagcctgaattcaaaatcgaaaccccataatgacaaagtgaaaacatgtttttagaaatataaGCAAATTGATTGAAAATCAAATACATTAATAATTCATTTAACATAAGTATTTACACTCCTTTGCTAtaacactccaaattgagctcaggtgcatccaatttcctttgatcatccattagatgtcactacaacttgcaTGTctgagcagaaactataccaagaagtccaaggaactgtccatAGATCTCTGAGATAGAATTGTGTtgaaaaatatggaactacccagactctgcctagagcagtccgtctgaccaaactgagcaaacaGGCAAGAAGGACCTAGGTAaggcaggtgaccaagaacccaatgaccactctgataGAACTacagttccttggctgagatgggagaacctgccagaaggacaaccgtgTCTACAGCACTTCACAAATCTGGGGTTTATGGGAgtgtggccagactgaagccactcctgagaaaaaggcacgacagcacacctggagtttgccaaaaaggcaagtgaaatacaaaaatattatttggtctgatgagacaaaaatttgagtctttggcctaaatgcaaagcgcTAAGTCTGGAAAAAAACAGCAATAACTCATCACACATTGAACACCATCCCTACCTACCGTGGAGCATGGCGGTAGCagcatgctatggggatgcttttcagcggctgtgactgggagactggtaaggatagggagaacaatgaatggagccaaatacaggcaactccttgagaacctgcttcagagtgcaaacaacAGACTGGGGCAAAAAtgtacattccaacaggacaaatgaccccaagcatacagcaaAAGCAATGCTgaaatggcttcagaacaagaatgtgaaagtccttgaggcCCTCAGCTAAAGCCCAggcttgaatcccattgaaaatgtgtggaaagacttgaagattacTGTTCACCGCCACTCTCCATCTAAcggagcttgagaaaa

Function

symbol description
slc35g1 Involved in calcium ion export across plasma membrane and regulation of cytosolic calcium ion concentration. Located in endoplasmic reticulum membrane and plasma membrane.

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021575792.2 True 3120 mRNA 0.44 3 13149521 13157107

Neighbor

gene id symbol gene type direction distance location
plce1 plce1 coding downstream 12132 13056633 ~ 13137389 (-)
LOC110499003 LOC105025155 coding downstream 161531 12985415 ~ 12987990 (-)
LOC110499001 LOC106589379 coding downstream 201056 12944394 ~ 12948465 (-)
LOC110498996 LOC106589382 coding downstream 338104 12805293 ~ 12811417 (-)
kif20bb LOC106589381 coding downstream 350738 12777485 ~ 12798783 (-)
LOC110499008 lgi1 coding upstream 677 13157784 ~ 13170700 (-)
pde6c LOC106589370 coding upstream 50660 13207767 ~ 13252579 (-)
cep55l cep55 coding upstream 100226 13257333 ~ 13272310 (-)
LOC110498744 NA coding upstream 149083 13306190 ~ 13309377 (-)
LOC118942003 NA coding upstream 385714 13542821 ~ 13550848 (-)
G1665189 NA non-coding downstream 68485 13049344 ~ 13081036 (-)
G1665188 NA non-coding downstream 118527 13030037 ~ 13030994 (-)
G1665184 NA non-coding downstream 119769 13029118 ~ 13029752 (-)
G1665168 NA non-coding downstream 142989 13006318 ~ 13006532 (-)
G1665167 NA non-coding downstream 147813 13001488 ~ 13001708 (-)
G1665264 NA non-coding upstream 29308 13186415 ~ 13186667 (-)
G1665270 NA non-coding upstream 49310 13206417 ~ 13207262 (-)
G1665263 rbp non-coding upstream 83375 13240482 ~ 13248413 (-)
G1665406 NA non-coding upstream 255926 13413033 ~ 13413348 (-)
G1664239 NA other downstream 898415 12250150 ~ 12251106 (-)
G1663264 NA other downstream 1606430 11542616 ~ 11543091 (-)
LOC110498953 NA other downstream 1990745 11121913 ~ 11158776 (-)
G1662039 NA other downstream 2672336 10476963 ~ 10477185 (-)
G1661001 LOC106589450 other downstream 3689406 9422783 ~ 9460115 (-)
G1665402 LOC106589366 other upstream 244174 13401281 ~ 13407377 (-)
G1666656 LOC106589183 other upstream 1065092 14222199 ~ 14223019 (-)
G1666788 NA other upstream 1267866 14424973 ~ 14425314 (-)
LOC110499033 LOC107708254 other upstream 1467248 14616546 ~ 14647860 (-)
G1667100 LOC106589344 other upstream 1733268 14890375 ~ 14897681 (-)

Expression


Co-expression Network