LOC110499008 (lgi1)


Basic Information

Item Value
gene id LOC110499008
gene name lgi1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 13157784 ~ 13170700 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021575794.2
CAACGTATTTTGGAGGATTTTAATCCGTCCAAGGATCGGTGACGTTTGCCGTATTTTCCCTGTCCTGCATTTACATACTGCGCCTTGCAGAACGAATCTTTTGGATGAGTGCCTGGTCATTGAGATACAAGCTGCATGCATCACTGCATAACTCGAAGCAAATACAGACATTCAAGATTTGACATTGAAACATTTTAAGTTTGGATATTTAATTGAGGTTCATGTTCAGAAATCTTCGACGGACTGGTTGTCACCAGAGAGCACCAAAAGGATGGGATATGGAAACAAAACCCTGAAAGAATGCACGGTCTTGCTTTGCGTCGCCACCATCCTGCTTTTAGCGGAGAGCAGAAGAGTGAAGCAACCTAGATGCCCCGCATCTTGTACGTGCACCAAAGATAATGCATTGTGTGAAAATATAAGATCGGTCCCTCACAGCTTTCCACCTGATGTCTTTTCCTTATCTTTTCTCAAATCAGGATTCACCCAAATCCCTGGAGGAAGCTTCTTACACTCCCCAGCGCTACATCTTCTCCTATTCACTGCCAACACATTTGACTCAATTGATGAGGATGCATTCCTTGGTCTACCGCATCTGGAGTACCTGTTTATCGAAAACAACAAAATTGCAACAATATCACAATATGCATTCCGGGGCCTAAAAGCAGTTATACACCTGAGCCTGGCCTATAATAACCTGGGTACATTACCCAAAGATGTTTTCAAGGGCATGGATGCTTTGGTGAAAGTGGATCTGAAAGGGAACAACCTGGAATGTGACTGCAAACTAAAGTGGCTGGTGGAGTGGATGCATACCACCAATGCGATGGTTGATCAGATCTTCTGCAGTGGGCCCCCGCTTTTTCAAGGGAAACTGATCAATGACCTTGTGCCCGGGTCTTTTGACTGCATAACTGCAGAGTTTGCCTCTTATCAGCCACTGATGTTTGAGTCCATTTCAGTGGAGTCCTTTATCTTTGGTATGGATACATTTGTTGTGTTTGCCCAGCCCTTTACTGGAACGTGCAGCTTCCTGGAATGGGATCACGTTGAAACTGTTTTCAGAACCTATGACAGCATTCAAAGTACATCCACTGTGGTATGCAAACCCATGGTGATTGATAATCAGCTGTTCATCTTCGTAGCCCAGCTCTTTGGTGGCTCTCACATTTACAAGCGGGACATTTCAGCCAACAAATTCATCAAAATCCAGGATATTGACATCCTAAAAATCAGGAAACCTAATGACATTGAGACTTTCCTCATAGACGGTGAGTCCTTCTTCGTGATCGCAGACAGCTCCAAGGCCGGTTATACCACAGTGTACAAGTGGAACGGCTATGGGTTCTACTCTCACCAGTCCCTCCATCTCTGGTACCGTGACACAGACGTGGAGTACCTGGAGATCTCTGGAAAGCCCCATCTGATCCTAGCCAGCAGTTCCCAGAGGCCTGTCATCTACCAGTGGAGCAAGAGTCTGAAGCAGTTCGACAGGCGCACTGATATCCCCGAAATGGAGGACGTGTATGCGGTCAAGCACTTCAAGGTGAAGAGTGATCTTTTCATCTGCCTGACGCGTTTTATTGGGGACTCCAAGGTGATGAGGTGGGACGGCGCCATGTTCAAAGAGGTACAGACAATGCCTTCGCGGGGCTCCATGGTCTTCCAGCCAGTCTCCATCGGCAACTGGCAGTACGCCATCCTCGGCAGCGACTACTCACTGACGCAGGTCTATCAGTGGGATTTGAAGAGGGGCCAATTTGTTCACTTCCAGGACCTGAACATCCAGGCACCAAGGGCATTCTCTGTGGTGTCCATTGACAACAGAGAGTTTCTGCTGGCCTCCAGCTTTAGAGGGAAAACTCAGATATACGAGCACATAATGATTGACCTGAGTAATAATTAATTAATGAAAACAATTAAGGAGTGTGTAGTTGATAAATGCAGTATCACATAACACTGGAGGGGATGACTATACTGTAGGGCTATATGCATGATATAGTCCACTAATAAGAATTCCTGATGAATGCCTTGCTAGAAACATCTACTGTATCCCTTTCTTTCACAGCACTCTCCTCTTTTCTTCCTTGTAGACAAAGCAATTGTTGACTGACTGCAACTAAGCCCTATACTACGACAATAGCTGTGCTTTAGGTAAAGAAAATAACGAGAATACATTCAAATGTAACTCAAATGTTAAATTGAACATTTCATTGACAAACAATTTGCCAAATAAAATGTTTACGTTTTTATAATGAGCCAATTAATTTATACGATACCGCATTTTGTATGTAGAGGGGACCACTCCAATCATGTTATATCTTTCATATGGAGCTAGTTTTAGATTTTGAAATTACATTTTGAATTTAACCTACTGTAGGCCAAGATATATAACTGCAATACTACAAAAAACATGTGTATTCTAATCTGTAGTAAGAGTGTATTTTGTTTTTACTTTAGCTGTATTTTATGTGTAGTAGGCTAgtaataaacacatttcataaaaCCATAA

Function

symbol description
lgi1 Enables signaling receptor binding activity. Involved in axon guidance and positive regulation of cell growth. Located in extracellular space. Implicated in familial temporal lobe epilepsy 1.

NR:

description
leucine-rich glioma-inactivated protein 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021575794.2 True 2512 mRNA 0.43 8 13157784 13170700

Neighbor

gene id symbol gene type direction distance location
slc35g1 slc35g1 coding downstream 677 13149521 ~ 13157107 (-)
plce1 plce1 coding downstream 20395 13056633 ~ 13137389 (-)
LOC110499003 LOC105025155 coding downstream 169794 12985415 ~ 12987990 (-)
LOC110499001 LOC106589379 coding downstream 209319 12944394 ~ 12948465 (-)
LOC110498996 LOC106589382 coding downstream 346367 12805293 ~ 12811417 (-)
pde6c LOC106589370 coding upstream 37067 13207767 ~ 13252579 (-)
cep55l cep55 coding upstream 86633 13257333 ~ 13272310 (-)
LOC110498744 NA coding upstream 135490 13306190 ~ 13309377 (-)
LOC118942003 NA coding upstream 372121 13542821 ~ 13550848 (-)
LOC110499015 LOC106589364 coding upstream 498237 13668937 ~ 14093823 (-)
G1665189 NA non-coding downstream 76748 13049344 ~ 13081036 (-)
G1665188 NA non-coding downstream 126790 13030037 ~ 13030994 (-)
G1665184 NA non-coding downstream 128032 13029118 ~ 13029752 (-)
G1665168 NA non-coding downstream 151252 13006318 ~ 13006532 (-)
G1665167 NA non-coding downstream 156076 13001488 ~ 13001708 (-)
G1665264 NA non-coding upstream 15715 13186415 ~ 13186667 (-)
G1665270 NA non-coding upstream 35717 13206417 ~ 13207262 (-)
G1665263 rbp non-coding upstream 69782 13240482 ~ 13248413 (-)
G1665406 NA non-coding upstream 242333 13413033 ~ 13413348 (-)
G1664239 NA other downstream 906678 12250150 ~ 12251106 (-)
G1663264 NA other downstream 1614693 11542616 ~ 11543091 (-)
LOC110498953 NA other downstream 1999008 11121913 ~ 11158776 (-)
G1662039 NA other downstream 2680599 10476963 ~ 10477185 (-)
G1661001 LOC106589450 other downstream 3697669 9422783 ~ 9460115 (-)
G1665402 LOC106589366 other upstream 230581 13401281 ~ 13407377 (-)
G1666656 LOC106589183 other upstream 1051499 14222199 ~ 14223019 (-)
G1666788 NA other upstream 1254273 14424973 ~ 14425314 (-)
LOC110499033 LOC107708254 other upstream 1453655 14616546 ~ 14647860 (-)
G1667100 LOC106589344 other upstream 1719675 14890375 ~ 14897681 (-)

Expression


Co-expression Network