LOC118942003


Basic Information

Item Value
gene id LOC118942003
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 13542821 ~ 13550848 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037871.1
GTTCAGTGACCAGCCAGAGGAAGACGACACGACAGCATCCTCCTCAGGGGATAGGTACTCTGTATAAAGTCAATTAGTACACACCTGGGCCCACTAATTGCTTTGTGACTTCCTCTATATAGGTGTGCCAGGAGAGCAGCTGGTGGAGAATTGGGAGTAGAGACGGGGACATGTCAGGCCGTCTGATTTTCCTACCTCATAGAAAGCTTATTTTACTGGGGCACCTTGGCTCTCTGTTAACCAAGGACACTTCGCACACATCCCACTGTGAGAAAAGACATTGAACAACAAATCTTGTCCTTTCCACGGCAAGCAAACCGGTATTCCTGGATGAAGGGGGGCGTGGATCAGGAATACCTCAGCCCAGACCTAAATCTGCAGATCTGAATCTGAAGATTCTGCTACAATGTGTGTGTGGCGTGAGGGCATTGCACACAGAGGGTCCATTGACGTGGCAAGTTGTGTATTGAAGTGGGTCCAAACACATTTTTCCACTCTAACAAAGCCAAAAGAAGTCAAGCTCATCATATTCAGTGACCGGTGTTGTGGTCAGAATAACAACTGGTGCATGTTGAATTTGATGTCTATGCTGGTATCCATGGGCTACTTCACTCAGGTTGAACAGAGGTTCATGGTGTCCTTCCTTCCATATGATCTGTCTTTTTCCGCTATTGAGAAGAGATACAAGGTGTCAACTCTGCATACCGCTGATGTGAGACAGATGACCCTGGAGTCTAGGCAACAGAATCCATTCAAGGTCATGCAGTgggCTGCTTAACAATGGAACCTCTACACCAGACAGAGCCACAGTCAATACGATTGATGGAGGTCATGGTTGGTCACTAAACCAAAGAATGGAGCAAGACCCCCAGCGCCATCGTTCTCCAAGGCCTTCCCCAGAGACAACGAGAATCCTTCGCCAATCCAGAAAGAACCAGGACCTCATGACGATGAGGAGCAATTTGCCTACTGCTGCACGGTCCTTCTATCAGGCACTTGAAGTGAAGCCTCGGGACATTTTTGGCATACATGTTGGTAGCATTGATGTCACTTCAACTAGAAGTTGATATAATTCCTCACTTGGTATATTAACGGATTTGGGTGGTTTCCGTTGTCAGGGGCCATAGGCTATTTGTATCAATCCAATTAGTAGGTTAGAAGTGTTCCTCCTCTGTTCTTTCATTCTGCATGATACTTTGCCCTCACAAAGTTGTCACTTACCACAAGTATTTTCCAGCAAAGCATAGAAAAagcttttattttgttctactcaATGTGGCTCTCTAAACAGGTGCCCGGCCTTGATACAAAGTTGCTATGTTTAGCCATTAAGGCTGGTCTAAGTGTTACTTTTGTGTTTTTAGTTTGTATAGTAGTGGTTTATATTGTTGAATTATTTTGTTATACGTCTATACATTTTTCTACCTGAAGTGTTGCTTCACCAACCGCTGAATATAACGTTTATTGTTAATAGAATAGcttcaattcattggggcatgaaCGGTGTTGAAAgagttctacagggatgctggctcaatggagagagatggctggtggactattcttgatactttttttta

Function

NR:

description
uncharacterized protein LOC110537513 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037871.1 True 1580 mRNA 0.44 3 13542821 13550848

Neighbor

gene id symbol gene type direction distance location
LOC110498744 NA coding downstream 233444 13306190 ~ 13309377 (-)
cep55l cep55 coding downstream 270511 13257333 ~ 13272310 (-)
pde6c LOC106589370 coding downstream 290242 13207767 ~ 13252579 (-)
LOC110499008 lgi1 coding downstream 372121 13157784 ~ 13170700 (-)
slc35g1 slc35g1 coding downstream 385714 13149521 ~ 13157107 (-)
LOC110499015 LOC106589364 coding upstream 118089 13668937 ~ 14093823 (-)
LOC110499016 LOC106589362 coding upstream 672322 14223170 ~ 14270879 (-)
LOC110499023 argi1 coding upstream 911549 14462397 ~ 14468271 (-)
heatr1 heatr1 coding upstream 917618 14468466 ~ 14492898 (-)
LOC118942475 NA coding upstream 930544 14481392 ~ 14481522 (-)
G1665419 NA non-coding downstream 111200 13430707 ~ 13431621 (-)
G1665407 NA non-coding downstream 127590 13414927 ~ 13415231 (-)
G1665406 NA non-coding downstream 129473 13413033 ~ 13413348 (-)
G1665263 rbp non-coding downstream 294408 13240482 ~ 13248413 (-)
G1665526 NA non-coding upstream 38370 13589218 ~ 13589438 (-)
G1666557 NA non-coding upstream 459046 14009894 ~ 14010228 (-)
G1666640 NA non-coding upstream 577632 14128480 ~ 14129207 (-)
G1666697 NA non-coding upstream 659990 14210838 ~ 14211058 (-)
G1666832 NA non-coding upstream 889327 14440175 ~ 14440400 (-)
G1665402 LOC106589366 other downstream 135444 13401281 ~ 13407377 (-)
G1664239 NA other downstream 1291715 12250150 ~ 12251106 (-)
G1663264 NA other downstream 1999730 11542616 ~ 11543091 (-)
LOC110498953 NA other downstream 2384045 11121913 ~ 11158776 (-)
G1662039 NA other downstream 3065636 10476963 ~ 10477185 (-)
G1666656 LOC106589183 other upstream 671351 14222199 ~ 14223019 (-)
G1666788 NA other upstream 874125 14424973 ~ 14425314 (-)
LOC110499033 LOC107708254 other upstream 1073507 14616546 ~ 14647860 (-)
G1667100 LOC106589344 other upstream 1339527 14890375 ~ 14897681 (-)
G1667916 NA other upstream 1788837 15339685 ~ 15415178 (-)

Expression


Co-expression Network