LOC110499028 (cssa28h16orf62)


Basic Information

Item Value
gene id LOC110499028
gene name cssa28h16orf62
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 14529014 ~ 14544454 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036955875.1
ttaaaaaaaatctggacAAATCTCTTATTAGAGGACAAAACTGTGTCGTCTCCAAATTGGTACTACAACCAGGAAGCGTAGACGTCATATGACTGGAGAAAAATGGCTGCTGTGCAGTGGCACTCTCGTGCACGCAGGTATGAGTCTGAACTGCAGAGCTGTGGCCTGGAGGTTGCCCCAGTGGAGTTTAGCGACTACCATCCCCTCAAGTCCATCACTGTGACAGACTCCAAGTCGCGGAGGGGAGCGCGTAAAGGcagcacctcctcctcttcctcctcttccagcTCTGTGGCACCAGATCCCCTGAGCTCCATGCTGGATGGAACGGACCCCCTGTCCATGTTTGCCGCAGCCTCTGCCAGCGAGTCCCCTCTAACCCTCTCACAGAGCAGCTCTACTGGGGACTTGggtagaggaaagaggagggagaaggaggatgaGGTTGGAGTGGACTTTGAACCGTGGTCATCCAAACGGGGAGAAATCCTTGCCAGGTTCACTACCACGGAGAAGCTCTCCATTAATCTCTTCATGGGCTCAGAGAAAGGCAAGGCTCCCAGTCTTGCCTCCTCCTCTGCTGTATCGGAGAAGGTGCGAACTCGCCTAGAGGAGCTGGATGACCTGGAAGAGGGGTCTCAGCGGGAGCTGCTGAATCTGTCCCAGCAGGACTATGTGAACCGTATCGAGGAGCTAAACCAGTCTCTAAAAGAGGCCTGGGCCTCCGACCAGAAGGTCAAGGCCCTCAAGATCGTCATCCAGtGCTCCAAGCTGCTGTCAGACACAGCTGTGATTCAGTTCTACCCAAGCAAGTTTGTCCTCATCACAGACATTCTGGACACCTTTGgacGTCTGGTGTATGAGAGGATCTGGTCCATGTGTTCTGACCCTCGCCCCCTACCAGACTCCTTTACAGCTGATGAAGTGAATGACACGGCCAAGGAGACCTGCCTCAACTGGTTCTTCAAAATTGCCTCCATCAGAGAGCTCATCCCACGACTATATGTCGAGGTAGCTCTCCTGAAGTGTAACCGTTTCTTGACCAAGTGTGGGATCCAAGAGACGGTGCCTCGCCTCACAGCTATGATCCGGGGGATAGGGGACCCCCTGGTGGCCGTGTATGCCCGGGCCTACCTCTGTCGGATTGGGATGGAGGTGGCTCCTCACCTGAAGGACAGCCTGAACAAGAACTTCTTTGACCTGCTGGGGACGTTCCGTCAGATCCATGGCGACAGTGTCCAGAACCAGCTGGTCCTGCAGAGGGTGGAGATCCCCGTCTACCTGACCCTCTACTCCCCCGCCATCCACTGGATCCTACAGTGTGTCTCCTACAGAGCACCAGAGGCCCTGCTaacagagatgatggagagatgcaAAAAGCTTGGGAATAATGCCCTGCTGCTGAACTCGGTGATGTGGGCGTTCAGGGCGGAGTTTATCGCGACGAGAGCCACCGACTTCATCGGCATGATCAAGGACTGTGATGAGGCAGGATTCCCTAAGcACCTGTTGTTTGGCTCTCTGGGCCGCAGCCTGGCCTGTGCTGACCCTCCTGAGGCGGAAAGGCTGCCCATCCTCAATGAGGCCTGGAAGGTCATCACCAAAGTGCGAAGTCCACAGGATTACATCAACTGTGCTGAGATCTGGGTGGAGTTCACCTGTCGTCACTTCACTAAACGTGAGGTCAACACTGTGCTCTCTGACATCATCAAGCACATGACCCCAGACCGGGCCTTTGAGGATGCCTATCCTCAGCTTCAGTCTGTGATACGGAAGATCCTCACCTACTTTCATGacttctctgtcctcttctccaTGgAGCGTTTCCTTCCCTTCATGGACATGTTCCAGAAGGACAGCGTCAGGGTGGGGGTGTGTCTCTCCATCATGGACGTCTTCATCAAACACCAGCAGGAGCCCACTAGAGATCCTGTCATCCTCAACGCTCTACTCCACGTCTGCAAGACCATGCACGACTCTGTCAATGCTCTGACGCTGGAGGACGAGAAGAGATCTCTGGCCTTGTTGATCAATGGCTTCATACGCATGgtgTCGTTTGGCCGTGACTTTGAGCAGCAGCTGAGTTTCTGTGTGGAGGCCCGGGCCACCTTCtgtaacctggagccagtgttgGTGCAGCTCATCCACACTGTGAACCAGCTGGCCATGGAGACGAGGCGTGTGATGAGGGGGAGCCACTCCCGCAAGACTGCTGCTTTTGTCAGGgCATGTGCTGCATACAGCTTCATCACCATTCCCTCCCTCACCAGCATCTTCAGCCGCCTCAACCTCTACCTGCTGTCTGGGCAGGTGGCCCTGGCCAACCAGTGTCTTTCCCAGGCGGATGCATTCCTGAAGGCAGCGGTCAGTGTGTTGCCAGAGGTGCCACGCAGTATCAGTATCGAGGGCAAACTGCGCTCTTCTGAGGGCTTCCTGCTTGACTTCATCAACAACTTCCTGTCAGCACTACTAGTTGTGCCGgaccATCCAGAGGCAGGGGTGTTGTTCCTTGTGCGTGGGCTGCTCAACATGGTGCAGGACTACACCTGGGAGGACAACAGTGACGCCAAGGTCCATGTCTACATCAGCGCCCTGCCACTACTGGCTGCCATGAGTCAGGAGAGCTACCTCTACTCCATCCCCAAAGTGGACTCGAATGAAACACTTTATGGAGGAGATCCCAAGTTTTTGGCAGAGATCAACAAGTTATGTGAAACTCTGATTGGACAAGTGCTGGACCACCTCAAGACCTTGGGTAGAGATGAGAGTGTCCATAGACAGGGTAGTCTGGCCTTCTCTCTGTTTGGCTGCCTCCTAGCTCACGGGGACCTACGCAACAACAAACTCAACCAGCTGGCTGTCAACCTGTGGAATCTGAGCCACAAGCAGGGTTACTGCAACACACGCACCTCCGTGCGGACATTAGAGTTCATCAAGCACCAGGCCCagcagccagacatggcttaCCTTTCAGACATGCTCCACCGCCTCACCTTGCAGTCCAGGACCTGAGGACATCGACTgcatcccctttttcctccatatATCTATGTGCACTGGAGGAATTGTCTCACCTTGCAATTGCATTCTCTGTTTAGCGCCCACGATCTGTCAACCAGGATCTTGGAGGGCTTTAAATGTTCTGATTTTCATCCTTCAGTATTTCATTTGGACCTCGTAAACTAGGTGTATAGACTCTATAGCCAATCAACGGATTAATTCGAAAACTCAAGACGGATCAGTCCTCAAGGACTGGCGCTAGATAGCCCTGGAAACAGAGGTCCTTGGTACGCCATTGTTGGAAagataaacaaaaataaaaaaagaacagATTCATGCAATGCTGTTAAAAGTCCCTGCATTTCAGTGATTGTATACTTGTTTATGGATTTGTACTGTACTGAAATTAAGTTTCTCCATTATGTGCTAACATTTTGTATATCATTGTAAAATTTCTGAACGTACGCGATTGAAAAAAGCAAAGAAAAC
>XM_036955874.1
tttaaaaaaaatctggacAAATCTCTTATTAGAGGACAAAACTGTGTCGTCTCCAAATTGGTACTACAACCAGGAAGCGTAGACGTCATATGACTGGAGAAAAATGGCTGCTGTGCAGTGGCACTCTCGTGCACGCAGGTATGAGTCTGAACTGCAGAGCTGTGGCCTGGAGGTTGCCCCAGTGGAGTTTAGCGACTACCATCCCCTCAAGTCCATCACTGTGACAGACTCCAAGTCGCGGAGGGGAGCGCGTAAAGGcagcacctcctcctcttcctcctcttccagcTCTGTGGCACCAGATCCCCTGAGCTCCATGCTGGATGGAACGGACCCCCTGTCCATGTTTGCCGCAGCCTCTGCCAGCGAGTCCCCTCTAACCCTCTCACAGAGCAGCTCTACTGGGGACTTGggtagaggaaagaggagggagaaggaggatgaGGTTGGAGTGGACTTTGAACCGTGGTCATCCAAACGGGGAGAAATCCTTGCCAGGTTCACTACCACGGAGAAGCTCTCCATTAATCTCTTCATGGGCTCAGAGAAAGGCAAGGCTCCCAGTCTTGCCTCCTCCTCTGCTGTATCGGAGAAGGTGCGAACTCGCCTAGAGGAGCTGGATGACCTGGAAGAGGGGTCTCAGCGGGAGCTGCTGAATCTGTCCCAGCAGGACTATGTGAACCGTATCGAGGAGCTAAACCAGTCTCTAAAAGAGGCCTGGGCCTCCGACCAGAAGGTCAAGGCCCTCAAGATCGTCATCCAGtGCTCCAAGCTGCTGTCAGACACAGCTGTGATTCAGTTCTACCCAAGCAAGTTTGTCCTCATCACAGACATTCTGGACACCTTTGgacGTCTGGTGTATGAGAGGATCTGGTCCATGTGTTCTGACCCTCGCCCCCTACCAGATTACTCTCCAGACTCCTTTACAGCTGATGAAGTGAATGACACGGCCAAGGAGACCTGCCTCAACTGGTTCTTCAAAATTGCCTCCATCAGAGAGCTCATCCCACGACTATATGTCGAGGTAGCTCTCCTGAAGTGTAACCGTTTCTTGACCAAGTGTGGGATCCAAGAGACGGTGCCTCGCCTCACAGCTATGATCCGGGGGATAGGGGACCCCCTGGTGGCCGTGTATGCCCGGGCCTACCTCTGTCGGATTGGGATGGAGGTGGCTCCTCACCTGAAGGACAGCCTGAACAAGAACTTCTTTGACCTGCTGGGGACGTTCCGTCAGATCCATGGCGACAGTGTCCAGAACCAGCTGGTCCTGCAGAGGGTGGAGATCCCCGTCTACCTGACCCTCTACTCCCCCGCCATCCACTGGATCCTACAGTGTGTCTCCTACAGAGCACCAGAGGCCCTGCTaacagagatgatggagagatgcaAAAAGCTTGGGAATAATGCCCTGCTGCTGAACTCGGTGATGTGGGCGTTCAGGGCGGAGTTTATCGCGACGAGAGCCACCGACTTCATCGGCATGATCAAGGACTGTGATGAGGCAGGATTCCCTAAGcACCTGTTGTTTGGCTCTCTGGGCCGCAGCCTGGCCTGTGCTGACCCTCCTGAGGCGGAAAGGCTGCCCATCCTCAATGAGGCCTGGAAGGTCATCACCAAAGTGCGAAGTCCACAGGATTACATCAACTGTGCTGAGATCTGGGTGGAGTTCACCTGTCGTCACTTCACTAAACGTGAGGTCAACACTGTGCTCTCTGACATCATCAAGCACATGACCCCAGACCGGGCCTTTGAGGATGCCTATCCTCAGCTTCAGTCTGTGATACGGAAGATCCTCACCTACTTTCATGacttctctgtcctcttctccaTGgAGCGTTTCCTTCCCTTCATGGACATGTTCCAGAAGGACAGCGTCAGGGTGGGGGTGTGTCTCTCCATCATGGACGTCTTCATCAAACACCAGCAGGAGCCCACTAGAGATCCTGTCATCCTCAACGCTCTACTCCACGTCTGCAAGACCATGCACGACTCTGTCAATGCTCTGACGCTGGAGGACGAGAAGAGATCTCTGGCCTTGTTGATCAATGGCTTCATACGCATGgtgTCGTTTGGCCGTGACTTTGAGCAGCAGCTGAGTTTCTGTGTGGAGGCCCGGGCCACCTTCtgtaacctggagccagtgttgGTGCAGCTCATCCACACTGTGAACCAGCTGGCCATGGAGACGAGGCGTGTGATGAGGGGGAGCCACTCCCGCAAGACTGCTGCTTTTGTCAGGgCATGTGCTGCATACAGCTTCATCACCATTCCCTCCCTCACCAGCATCTTCAGCCGCCTCAACCTCTACCTGCTGTCTGGGCAGGTGGCCCTGGCCAACCAGTGTCTTTCCCAGGCGGATGCATTCCTGAAGGCAGCGGTCAGTGTGTTGCCAGAGGTGCCACGCAGTATCAGTATCGAGGGCAAACTGCGCTCTTCTGAGGGCTTCCTGCTTGACTTCATCAACAACTTCCTGTCAGCACTACTAGTTGTGCCGgaccATCCAGAGGCAGGGGTGTTGTTCCTTGTGCGTGGGCTGCTCAACATGGTGCAGGACTACACCTGGGAGGACAACAGTGACGCCAAGGTCCATGTCTACATCAGCGCCCTGCCACTACTGGCTGCCATGAGTCAGGAGAGCTACCTCTACTCCATCCCCAAAGTGGACTCGAATGAAACACTTTATGGAGGAGATCCCAAGTTTTTGGCAGAGATCAACAAGTTATGTGAAACTCTGATTGGACAAGTGCTGGACCACCTCAAGACCTTGGGTAGAGATGAGAGTGTCCATAGACAGGGTAGTCTGGCCTTCTCTCTGTTTGGCTGCCTCCTAGCTCACGGGGACCTACGCAACAACAAACTCAACCAGCTGGCTGTCAACCTGTGGAATCTGAGCCACAAGCAGGGTTACTGCAACACACGCACCTCCGTGCGGACATTAGAGTTCATCAAGCACCAGGCCCagcagccagacatggcttaCCTTTCAGACATGCTCCACCGCCTCACCTTGCAGTCCAGGACCTGAGGACATCGACTgcatcccctttttcctccatatATCTATGTGCACTGGAGGAATTGTCTCACCTTGCAATTGCATTCTCTGTTTAGCGCCCACGATCTGTCAACCAGGATCTTGGAGGGCTTTAAATGTTCTGATTTTCATCCTTCAGTATTTCATTTGGACCTCGTAAACTAGGTGTATAGACTCTATAGCCAATCAACGGATTAATTCGAAAACTCAAGACGGATCAGTCCTCAAGGACTGGCGCTAGATAGCCCTGGAAACAGAGGTCCTTGGTACGCCATTGTTGGAAagataaacaaaaataaaaaaagaacagATTCATGCAATGCTGTTAAAAGTCCCTGCATTTCAGTGATTGTATACTTGTTTATGGATTTGTACTGTACTGAAATTAAGTTTCTCCATTATGTGCTAACATTTTGTATATCATTGTAAAATTTCTGAACGTACGCGATTGAAAAAAGCAAAGAAAAC

Function

NR:

description
UPF0505 protein C16orf62 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036955875.1 False 3489 mRNA 0.53 29 14529014 14544453
XM_036955874.1 True 3502 mRNA 0.53 29 14529014 14544454
Loading

Neighbor

gene id symbol gene type direction distance location
heatr1 heatr1 coding downstream 36116 14468466 ~ 14492898 (-)
LOC118942475 NA coding downstream 47492 14481392 ~ 14481522 (-)
LOC110499023 argi1 coding downstream 60743 14462397 ~ 14468271 (-)
LOC110499016 LOC106589362 coding downstream 258135 14223170 ~ 14270879 (-)
LOC110499015 LOC106589364 coding downstream 435191 13668937 ~ 14093823 (-)
LOC110499027 LOC106589352 coding upstream 14207 14558661 ~ 14572216 (-)
LOC110499033 LOC107708254 coding upstream 72092 14616546 ~ 14647860 (-)
LOC110499034 LOC106589350 coding upstream 107276 14651730 ~ 14659225 (-)
LOC110499036 LOC106589225 coding upstream 117898 14662352 ~ 14664759 (-)
LOC110499035 LOC106589349 coding upstream 121631 14666085 ~ 14670807 (-)
G1666780 NA non-coding downstream 20728 14494975 ~ 14508286 (-)
G1666782 NA non-coding downstream 70183 14454542 ~ 14458831 (-)
G1666832 NA non-coding downstream 88614 14440175 ~ 14440400 (-)
G1666697 NA non-coding downstream 317956 14210838 ~ 14211058 (-)
G1666640 NA non-coding downstream 399807 14128480 ~ 14129207 (-)
G1666875 NA non-coding upstream 44525 14588979 ~ 14591016 (-)
G1666900 NA non-coding upstream 157404 14701858 ~ 14706866 (-)
LOC110498748 LOC106589347 non-coding upstream 164108 14708549 ~ 14757148 (-)
G1666947 NA non-coding upstream 214001 14758455 ~ 14758680 (-)
G1666788 NA other downstream 103700 14424973 ~ 14425314 (-)
G1666656 LOC106589183 other downstream 305995 14222199 ~ 14223019 (-)
G1665402 LOC106589366 other downstream 1121637 13401281 ~ 13407377 (-)
G1664239 NA other downstream 2277908 12250150 ~ 12251106 (-)
G1663264 NA other downstream 2985923 11542616 ~ 11543091 (-)
G1667100 LOC106589344 other upstream 345921 14890375 ~ 14897681 (-)
G1667916 NA other upstream 795231 15339685 ~ 15415178 (-)
LOC110498749 s39ab other upstream 1022104 15421293 ~ 15577049 (-)
LOC110498751 LOC106589337 other upstream 1092691 15636400 ~ 15680564 (-)

Expression

LOC110499028(cssa28h16orf62) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 20.
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LOC110499028(cssa28h16orf62) Expression in each Bioproject

Bar chart with 21 bars.
LOC110499028(cssa28h16orf62) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
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Co-expression Network