LOC110498749 (s39ab)


Basic Information

Item Value
gene id LOC110498749
gene name s39ab
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 15421293 ~ 15577049 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110498749
ATCATTATTTTCATATCACTATTTtatcattccagccattacaatgagcccgttttcctatagctcctcccaccagcctccacagaTGGATACCCACATGTAGGAACACTCCAAATTGCGGGCGCAGTTACACCCTTGTAGTATATGTTCAGTTTGAATTGtccacatacatttttttttacttgacagCTACATATCTAAATTCAAGAAGGCCTAGTCAAACGTTAGTGAATGCGGTCTGTGCCTTTGTGAATGAAGGCTCATTGTCCTATCACATTTCAATTAACGCCTCCAACCTGGACTAGCCAATGGCATCTTGCAAGGGGCGGTGCTCAACCTGTTACAGACACGCGTACAGGGAAGTAGGAAGTAAATAGATTAGACTTTCGGTGCAGGAGTGACAGATTGGCACCATGCTTCCAGGCTACAGTCCTGTGACCCAGGCCCTGCTGGGGACTCTGTTCACCTGGGGCCTGACTGCTGCTGGGGCTGCCCTGGTCTTCATCTTttccacctgacagCTGATGTTGGCGGTGTCCTATTGGTCGTTGCTGGCACCGGCGATAGACATGGCAGAGGATTCGGGAAAGTATGGCTCGTTTGCGTTCGTCCCTGTGGCGGTGGGTGTTGCCCTCGGCGCGGCCTTCGTCTACCTGGTTGACCTCATGATGCCTGCTCTGGGCGTAGGGGTGGACCCCCACATAGCCCTGGCCCTGCCCCCAGGATCCAAACTGGCCAAGGAGGAGGACCCCCTGTTCCCAGCCATCAGACGAGATGACCATCAGGATAGGTAGAGCAGGACCACTCTCAGAAAAGCTTGAGAACGGAGGAGACGTGTACCAAAGGAGGAAAGGCCCCTACGCCGATGCTGGCTCTTCAGACTCCGAGGGACAGGAAGTGGGCAGTCGGCAACAGGATGGGGCAGGGCAAACAGGAAGCAGCTGGAGGCGCATCGTCCTCCTGATCCTGGCCATCACCATCCACAACATCCCAGAGGGCCTTGCTGTTGGTGTAGGGTTCGGAGCCATAGGAAAGACCTCATCGGCCACGCTCGAGAGTGCCAGAAACTTGGCCATTGGCATAGGTATCCAGAATTTCCCAGAGGGCCTTGCGGTGAGCCTCCCTCTGCGAGGTGCAGGGATGTCCACGTGGAAAGCCTTCTGGTATGGACAGCTCAGTGGTATGGTAGAACCAATCGCCGGGTTGCTAGGCGCCGTTGCTGTGGTGCTGTCCTTCGCTGCCGGGGCCATGGTGTATGTGGTGGTTGATGACATCATCCCAGAGGCTCAACTCAGTGGGAACGGTAAGCTGGCTTCCTGGACCTCCATCCTGGGCTTTGTAGTGATGATGTCACTGGACGTTGGGCTGGGCTGAGGCTTCGCATGGAACACCACTGATGTCACAGAACGATGTCACAGAATATGACAATCACCAGACCTCGAAAGAAGAAAAGGGACCAAATCTGCCTTTTCTCCAACTGCTTGCTTTTATTTTATGTTATGATTTTTGGAATTATAACATTTTGCGCATTTCATCCAACGATCTGCATATCTGTCGATTCTCATTTTACACccagtcggctcagggattccaaccagcgacctttcagttactggcacgACTTTTTAACTGCTAGGCCTGCTGTCCCGTGTGCTCGCTCTCCGGCCTCTAGGGCACCAGGCTGCTGGTTATGGCGATACACATGTCATCATCGTTAAGCGCACCTACCCatcgtcagactca
>TU1908420
GGAAGTAGGAAGTAAATAGATTAGACTTTCGGTGCAGGAGTGACAGATTGGCACCATGCTTCCAGGCTACAGTCCTGTGACCCAGGCCCTGCTGGGGACTCTGTTCACCTGGGGCCTGACTGCTGCTGGGGCTGCCCTGGTCTTCATCTTttccacctgacaggatgaacaatatctGGCATCCTGTCGGAATGTATCACAGCCTCGTACGGCAACTGCAACGCCCTCAACCAcaagggtggtgcggtctgcacaacgcatcaccaggggcaaactacctgccctctgacacctacagtacccggtgtcacaggaaggccaaaaagatcatcaaggacaacaaccactcgagcaagtgcctgttcacaccactatcatccagaaggcgaggtcagtgcaggtgcatcaaagctgggactgagagaagctgtttttcaatcaaTCTATATCTAGGCCTTCAGACTGTTCACTATCACTAACTCagtgaggctgctgcctacactgagacccaatcactggacactttaataaatggatcacttgtcactttaaacaatgccactttaatatgTTTTCATATCTTACATTATTCATatcacatgtacatactgtattttataccatctactgcaccttgcctatgccgctcgggcGTTGTTCATCCAtacatttatatgtacatattctcattcacccc

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0030001 metal ion transport biological_process
GO:0016020 membrane cellular_component
GO:0046873 metal ion transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110498749 False 1743 mRNA 0.48 9 15421293 15577049
TU1908420 True 697 TUCP 0.48 3 15566558 15576691

Neighbor

gene id symbol gene type direction distance location
LOC110499043 NA coding downstream 518237 14899047 ~ 14903056 (-)
vstm4b cj072 coding downstream 557581 14856302 ~ 14863712 (-)
LOC110499039 LOC106589224 coding downstream 575881 14843483 ~ 14845412 (-)
LOC110499037 LOC106589345 coding downstream 604535 14774458 ~ 14816758 (-)
LOC110498748 LOC106589347 coding downstream 664145 14708549 ~ 14757148 (-)
LOC110499047 NA coding upstream 19098 15596147 ~ 15607535 (-)
LOC110498751 LOC106589337 coding upstream 59351 15636400 ~ 15680564 (-)
LOC110499049 cops3 coding upstream 119323 15696372 ~ 15707560 (-)
LOC110499050 LOC106589334 coding upstream 179610 15756659 ~ 15758251 (-)
LOC110498752 LOC106589219 coding upstream 328349 15905398 ~ 15907080 (-)
G1667916 NA non-coding downstream 6115 15339685 ~ 15415178 (-)
G1667941 NA non-coding downstream 97405 15323655 ~ 15323888 (-)
G1667938 NA non-coding downstream 99530 15321538 ~ 15321763 (-)
G1667572 NA non-coding downstream 125266 15294521 ~ 15296027 (-)
G1667398 NA non-coding downstream 279397 15141679 ~ 15141896 (-)
G1667922 NA non-coding upstream 32665 15609714 ~ 15619443 (-)
G1668553 NA non-coding upstream 429149 16006198 ~ 16075051 (-)
G1668590 NA non-coding upstream 485824 16062873 ~ 16063197 (-)
G1668606 LOC106589333 non-coding upstream 507152 16084201 ~ 16085870 (-)
G1667100 LOC106589344 other downstream 523612 14890375 ~ 14897681 (-)
LOC110499033 LOC107708254 other downstream 786853 14616546 ~ 14647860 (-)
G1666788 NA other downstream 995979 14424973 ~ 14425314 (-)
G1666656 LOC106589183 other downstream 1198274 14222199 ~ 14223019 (-)
G1668767 NA other upstream 760227 16337276 ~ 16337734 (-)
LOC110499060 LOC106589322 other upstream 970299 16547347 ~ 16560741 (-)
G1669343 LOC106589306 other upstream 1176977 16754026 ~ 16795255 (-)
G1669974 NA other upstream 1692734 17269783 ~ 17270148 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location