LOC110498751 (LOC106589337)


Basic Information

Item Value
gene id LOC110498751
gene name LOC106589337
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 15636400 ~ 15680564 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036955884.1
GGGGCTTGCAGCAACGCTCGCGGTGTTCTGTTGAAATTCCATTGCcgaacattagctagctaaaataacTGGAACTAAGGATATAGCTTCCGAAGTGTGGCCAACGACCAATACCACCCAAATGTGGATTTAATTTGGGAAAAATATGTCAAAATTCTGGAATGGGATTACTCAAGGATTGCTTTGATGTGTACTGCATTTACCTCCGATTTAGCTGTGGCTACCTCTCAAGCTAGCCGAATCGGAACAATCGGCGGATAACTGGCTAACTAACGTTAAACGtaactaacttagctagctaattcTTTAACGTCAGGACTAGGACGGAGCACGTTTCATCGTTAAAAATACACAAAACGAATGTTACTGTCATGAGTCCAGCCGGGTGCCCCCATGTGAACGGGTTCAAAGTGGATAACTGGAAACAGAATCTACGGGTCATTTACCAATGCTTTGTGTGGAGTGGGTCTGCCGAAACCAGGAAACGCAAGGCCAAGTCGTGTGTCTGTCACATGTGCGGTGCCCACCTGAACCGGCTCCACTCCTGCCTCTACTGCGTCTTCTTCGGCTGCTTCACCAAGAAACACATCCACGAGCACGCCAAAAACAAACGACACAATCTAGCTATAGATCTATTGTATGGAGGTATATATTGCTTTGTGTGCCAAGACTACATATACGACAAAGAAATGGAACAGATTGCCAAAGAGGAACAAAGGAAAGCGTGGAAATTGCAAGgtgtagGGGAGAAGTATTCGACGTGGGAGCCCACCAAACGAGAGCTGGAGCTGCTGCGGCACAATCCAAAGCGTCGGAAAATGACGACAAACTGCACCATCGgtcTTCGAGGTCTGATCAACCTGGGCAACACGTGTTTTATGAACTGCATCGTCCAGGCCCTCACCCATACGCCCCTACTGCGGGACTTCTTCCTGTCCGACAGACACAAGTGTGAGATGCAGTCCAACTCCTGTCTGGTGTGTGAGATGTCCCAGCTCTTTCAGGAGttctACTCGGGCCACCGTTCGCCCCACATTCCCTTCCGACTGCTGCACCTGGTGTGGACTCACGCGCGCCACCTAGCAGGCTACGAGCAGCAGGATGCCCACGAGTTCCTCATCGCTGCCCTGGACGTGTTGCACCGCCACTGCAAAGGAGATGATAACGGGAAGAAGGCCAACAACCCCAATAACTGCAACTGCATCATCGACCAAATCTTCACTGGGGGTCTGCAGTCTGACGTCACCTGTCAAGTCTGCCATGGTGTTTCCACAACGATAGACCCGTTCTGGGACATCAGTCTGGACCTGCCGGGGTCGTCCACGCCCTTCTGGCCCCTCAGCCCCGGGGGAGACGGCAGCACACTCAACGGAGAGAGCCACCTCTCAGGGGCCACCACACTCACAGACTGTCTACGCAGGTTTACCCGACCAGAGCACTTAGGGAGCGGCGCCAAGATTAAGTGTAGCGGTTGCCATAGTTACCAGGAGTCCACCAAACAGCTGACTATGAAGAAGCTCCCCATTGTGGCGTGTTTCCACCTCAAAaggTTTGAACACTCTGCGAAGCTACGGAGGAAGATCATTACGTACGTCTCGTTCCCCTTAGAGCTGGACATGACTCCCTTCATGGCCTCCAGCAAAGAGAACAGGATGAACGGACAGTACCAGCAGTCAGTAGACGTTTTCAACGACAATAAGTATTCTCTGTTTGCGGTGGTCAACCACCAGGGTACTCTGGAGAGCGGTCACTACACCACGTTCATCCGGCAGCACATGGACCAGTGGTTCAAGTGTGACGATGCCATCATCACCAAGGCCAGCAACAAGGACGTGTTGGACAGTGAAGGGTACCTTTTGTTCTACCATAAACAGTTTCTGGAGTATGAATAGCCAAGCTTCCTTCAGCACTGATGTCAACAGCCACCAAGAGTTACGCAACAACAAAATGGCAACATAACACAAGCCTGCCTGAAAATCTACATCGGTGAAGATTTGAAGCTGTGGGAATGGAGGAACACCGCATCCTTTCTAACTAAAAGGTCACTCCAAAACCAATCTGCATGGAAGCTACTACGTAGGATCTACTTGATAGGGCGGAAAGGCGGAAGAGCAGGGGGAAGATTGCAGAACGGCGAGAGAAACGAGGAGCCTTTGTTGGAAGATGAGGTgcttcactctctcgctctcctctcctatcGTTTCGGGCAGATGAAGGAACAGTCCGACAGTGGCCACATCTCATAAAAACAGTCAACTTCACGTTGTATTATTTTCTGAAATCCATAATTCCactctcccccccacacacacacccatctctCAAGTGACCAAACATTTCTGAGGGAAGACATTTGGTTGTCTAAGTTCATTATATGCATTGTTATTGCTCTGAATGCAAAACAAGCTGACAGATTATATTAAGAACATTGCAAACACAAGAAGAGATGATTATAATCGTTGTTTGAACTTTTTAGTTTTGAAAATACTGTATGATGAATCTAgcgcacatttttttttttttttttttttttttttttactgaaaaaaagatgggaggtagagaaagggaggaggttGTTCTGTGAAAAGTCCCAccctctttcttttcttttcttttttctgtGAGGGCAGGGAAAATATAGAAGTATATTTTTATAAGTCATTTGAATCCTTGTTCACGGTTTCCAATGTTCCCCCCTCCCTCGAACCCCTGTCCTTGTTATGTTGTGCAGTCAATCATGTATTTTttgaaaaaatgtatgcttcTTCTCATGAGACTGCTGTTGTCGAGCCTTTTTCACATTTGttggttggtttgtttgtttcTTGTGACGGGATAATTATTTTGTTGCTGACATGGTTGTGAAGATGTTTCAGGTGATGCGTTGTTGTGAATAAGAAAAAGACGAGCACTATTCTGACACGGTGTGTATCCTGCCGTGGCGCGATCCGACAGTGTTAAACTTTGGCCACATGTTGctctaattgtgtgtgtgggtgtacgcACATGTGTTGTGCGCATGTTTGTGTACTGAATCAGTACTTTTTTTTTCACATGTTAATTATGTATGTtaaagtatgtatgtatgttaaaAAAGAAAACCAAGGTATAAACTGAGTTCCTTTATCCATGTGgctggaaaaggtcaagggttaTTATGCTAGTCAAAAATACATCCCCCACACTTTATCTGCTGCAAGAACTGGACACTGATGGTGAGACACACAATAAAAAATCTATGTCTATA
>XM_036955885.1
GGGGCTTGCAGCAACGCTCGCGGTGTTCTGTTGAAATTCCATTGCcgaacattagctagctaaaataacTGGAACTAAGGATATAGCTTCCGAAGTGTGGCCAACGACCAATACCACCCAAATGTGGATTTAATTTGGGAAAAATATGTCAAAATTCTGGAATGGGATTACTCAAGGATTGCTTTGATGTGTACTGCATTTACCTCCGATTTAGCTGTGGCTACCTCTCAAGCTAGCCGAATCGGAACAATCGGCGGATAACTGGCTAACTAACGTTAAACGtaactaacttagctagctaattcTTTAACGTCAGGACTAGGACGGAGCACGTTTCATCGTTAAAAATACACAAAACGAATGTTACTGTCATGAGTCCAGCCGGGTGCCCCCATGTGAACGGGTTCAAAGTGGATAACTGGAAACAGAATCTACGGGTCATTTACCAATGCTTTGTGTGGAGTGGGTCTGCCGAAACCAGGAAACGCAAGGCCAAGTCGTGTGTCTGTCACATGTGCGGTGCCCACCTGAACCGGCTCCACTCCTGCCTCTACTGCGTCTTCTTCGGCTGCTTCACCAAGAAACACATCCACGAGCACGCCAAAAACAAACGACACAATCTAGCTATAGATCTATTGTATGGAGGTATATATTGCTTTGTGTGCCAAGACTACATATACGACAAAGAAATGGAACAGATTGCCAAAGAGGAACAAAGGAAAGCGTGGAAATTGCAAGgtgtagGGGAGAAGTATTCGACGTGGGAGCCCACCAAACGAGAGCTGGAGCTGCTGCGGCACAATCCAAAGCGTCGGAAAATGACGACAAACTGCACCATCGgtcTTCGAGGTCTGATCAACCTGGGCAACACGTGTTTTATGAACTGCATCGTCCAGGCCCTCACCCATACGCCCCTACTGCGGGACTTCTTCCTGTCCGACAGACACAAGTGTGAGATGCAGTCCAACTCCTGTCTGGTGTGTGAGATGTCCCAGCTCTTTCAGGAGttctACTCGGGCCACCGTTCGCCCCACATTCCCTTCCGACTGCTGCACCTGGTGTGGACTCACGCGCGCCACCTAGCAGGCTACGAGCAGCAGGATGCCCACGAGTTCCTCATCGCTGCCCTGGACGTGTTGCACCGCCACTGCAAAGATGATAACGGGAAGAAGGCCAACAACCCCAATAACTGCAACTGCATCATCGACCAAATCTTCACTGGGGGTCTGCAGTCTGACGTCACCTGTCAAGTCTGCCATGGTGTTTCCACAACGATAGACCCGTTCTGGGACATCAGTCTGGACCTGCCGGGGTCGTCCACGCCCTTCTGGCCCCTCAGCCCCGGGGGAGACGGCAGCACACTCAACGGAGAGAGCCACCTCTCAGGGGCCACCACACTCACAGACTGTCTACGCAGGTTTACCCGACCAGAGCACTTAGGGAGCGGCGCCAAGATTAAGTGTAGCGGTTGCCATAGTTACCAGGAGTCCACCAAACAGCTGACTATGAAGAAGCTCCCCATTGTGGCGTGTTTCCACCTCAAAaggTTTGAACACTCTGCGAAGCTACGGAGGAAGATCATTACGTACGTCTCGTTCCCCTTAGAGCTGGACATGACTCCCTTCATGGCCTCCAGCAAAGAGAACAGGATGAACGGACAGTACCAGCAGTCAGTAGACGTTTTCAACGACAATAAGTATTCTCTGTTTGCGGTGGTCAACCACCAGGGTACTCTGGAGAGCGGTCACTACACCACGTTCATCCGGCAGCACATGGACCAGTGGTTCAAGTGTGACGATGCCATCATCACCAAGGCCAGCAACAAGGACGTGTTGGACAGTGAAGGGTACCTTTTGTTCTACCATAAACAGTTTCTGGAGTATGAATAGCCAAGCTTCCTTCAGCACTGATGTCAACAGCCACCAAGAGTTACGCAACAACAAAATGGCAACATAACACAAGCCTGCCTGAAAATCTACATCGGTGAAGATTTGAAGCTGTGGGAATGGAGGAACACCGCATCCTTTCTAACTAAAAGGTCACTCCAAAACCAATCTGCATGGAAGCTACTACGTAGGATCTACTTGATAGGGCGGAAAGGCGGAAGAGCAGGGGGAAGATTGCAGAACGGCGAGAGAAACGAGGAGCCTTTGTTGGAAGATGAGGTgcttcactctctcgctctcctctcctatcGTTTCGGGCAGATGAAGGAACAGTCCGACAGTGGCCACATCTCATAAAAACAGTCAACTTCACGTTGTATTATTTTCTGAAATCCATAATTCCactctcccccccacacacacacccatctctCAAGTGACCAAACATTTCTGAGGGAAGACATTTGGTTGTCTAAGTTCATTATATGCATTGTTATTGCTCTGAATGCAAAACAAGCTGACAGATTATATTAAGAACATTGCAAACACAAGAAGAGATGATTATAATCGTTGTTTGAACTTTTTAGTTTTGAAAATACTGTATGATGAATCTAgcgcacatttttttttttttttttttttttttttttactgaaaaaaagatgggaggtagagaaagggaggaggttGTTCTGTGAAAAGTCCCAccctctttcttttcttttcttttttctgtGAGGGCAGGGAAAATATAGAAGTATATTTTTATAAGTCATTTGAATCCTTGTTCACGGTTTCCAATGTTCCCCCCTCCCTCGAACCCCTGTCCTTGTTATGTTGTGCAGTCAATCATGTATTTTttgaaaaaatgtatgcttcTTCTCATGAGACTGCTGTTGTCGAGCCTTTTTCACATTTGttggttggtttgtttgtttcTTGTGACGGGATAATTATTTTGTTGCTGACATGGTTGTGAAGATGTTTCAGGTGATGCGTTGTTGTGAATAAGAAAAAGACGAGCACTATTCTGACACGGTGTGTATCCTGCCGTGGCGCGATCCGACAGTGTTAAACTTTGGCCACATGTTGctctaattgtgtgtgtgggtgtacgcACATGTGTTGTGCGCATGTTTGTGTACTGAATCAGTACTTTTTTTTTCACATGTTAATTATGTATGTtaaagtatgtatgtatgttaaaAAAGAAAACCAAGGTATAAACTGAGTTCCTTTATCCATGTGgctggaaaaggtcaagggttaTTATGCTAGTCAAAAATACATCCCCCACACTTTATCTGCTGCAAGAACTGGACACTGATGGTGAGACACACAATAAAAAATCTATGTCTATA
>TU1908412
CAAGCATTAATTCTCAatcgcgtgtgtgtgttttgtccctgTACTCTCGATGTTCACCAAGGAGATGATAACGGGAAGAAGGCCAACAACCCCAATAACTGCAACTGCATCATCGACCAAATCTTCACTGGGGGTCTGCAGTCTGACGTCACCTGTCAAGTCTGCCATGGTGTTTCCACAACGATAGACCCGTTCTGGGACATCAGTCTGGACCTGCCGGGGTCGTCCACGCCCTTCTGGCCCCTCAGCCCCGGGGGAGACGGCAGCACACTCAACGGAGAGAGCCACCTCTCAGGGGCCACCACACTCACAGACTGTCTACGCAGGTTTACCCGACCAGAGCACTTAGGGAGCGGCGCCAAGATTAAGTGTAGCGGTTGCCATAGTTACCAGGAGTCCACCAAACAGCTGACTATGAAGAAGCTCCCCATTGTGGCGTGTTTCCACCTCAAAgTTTGAACACTCTGCGAAGCTACGGAGGAAGATCATTACGTACGTCTCGTTCCCCTTAGAGCTGGACATGACTCCCTTCATGGCCTCCAGCAAAGAGAACAGGATGAACGGACAGTACCAGCAGTCAGTAGACGTTTTCAACGACAATAAGTATTCTCTGTTTGCGGTGGTCAACCACCAGGGTACTCTGGAGAGCGGTCACTACACCACGTTCATCCGGCAGCACATGGACCAGTGGTTCAAGTGTGACGATGCCATCATCACCAAGGCCAGCAACAAGGACGTGTTGGACAGTGAAGGGTACCTTTTGTTCTACCATAAACAGTTTCTGGAGTATGAATAGCCAAGCTTCCTTCAGCACTGATGTCAACAGCCACCAAGAGTTACGCAACAACAAAATGGCAACATAACACAAGCCTGCCTGAAAATCTACATCGGTGAAGATTTGAAGCTGTGGGAATGGAGGAACACCGCATCCTTTCTAACTAAAAGGTCACTCCAAAACCAATCTGCATGGAAGCTACTACGTAGGATCTACTTGATAGGGCGGAAAGGCGGAAGAGCAGGGGGAAGATTGCAGAACGGCGAGAGAAACGAGGAGCCTTTGTTGGAAGATGAGGTgcttcactctctcgctctcctctcctatcGTTTCGGGCAGATGAAGGAACAGTCCGACAGTGGCCACATCTCATAAAAACAGTCAACTTCACGTTGTATTATTTTCTGAAATCCATAATTCCactctcccccccacacacacacccatctctCAAGTGACCAAACATTTCTGAGGGAAGACATTTGGTTGTCTAAGTTCATTATATGCATTGTTATTGCTCTGAATGCAAAACAAGCTGACAGATTATATTAAGAACATTGCAAACACAAGAAGAGATGATTATAATCGTTGTTTGAACTTTTTAGTTTTGAAAATACTGTATGATGAATCTAgc
>TU1908413
TTCTGCATCTGCGGTGAccgagctagagcggtgtttgtcagaccttgAGACGTGGCGGAAAATTGGTtttctcacaaaatcgtctgtagcgtCTGAATGGGTTTCAAACTATtttgacccctctatggaaagatgagactcttaACGAACGCggtggtgttctccgtttttctCTTTGAACcccacaagcgtcttgggactGGTCTGGAGTCGGGTACAGCTGATCTGCCAActtcttctgtctgtagcgtccaaacagttCTGGccacacactaatatgacccctctgtagAAAGGTACCTTTTGTTCTACCATAAACAGTTTCTGGAGTATGAATAGCCAAGCTTCCTTCAGCACTGATGTCAACAGCCACCAAGAGTTACGCAACAACAAAATGGCAACATAACACAAGCCTGCCTGAAAATCTACATCGGTGAAGATTTGAAGCTGTGGGAATGGAGGAACACCGCATCCTTTCTAACTAAAAGGTCACTCCAAAACCAATCTGCATGGAAGCTACTACGTAGGATCTACTTGATAGGGCGGAAAGGCGGAAGAGCAGGGGGAAGATTGCAGAACGGCGAGAGAAACGAGGAGCCTTTGTTGGAAGATGAGGTgcttcactctctcgctctcctctcctatcGTTTCGGGCAGATGAAGGAACAGTCCGACAGTGGCCACATCTCATAAAAACAGTCAACTTCACGTTGTATTATTTTCTGAAATCCATAATTCCactctcccccccacacacacacccatctctCAAGTGACCAAACATTTCTGAGGGAAGACATTTGGTTGTCTAAGTTCATTATATGCATTGTTATTGCTCTGAATGCAAAACAAGCTGACAGATTATATTAAGAACATTGCAAACACAAGAAGAGATGATTATAATCGTTGTTTGAACTTTTTAGTTTTGAAAATACTGTATGATGAATCTAgc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036955884.1 False 3250 mRNA 0.47 13 15636400 15680564
XM_036955885.1 False 3247 mRNA 0.47 13 15636400 15680564
TU1908412 False 1409 TUCP 0.48 7 15637145 15644925
TU1908413 True 952 lncRNA 0.44 2 15637145 15639189

Neighbor

gene id symbol gene type direction distance location
LOC110499047 NA coding downstream 28865 15596147 ~ 15607535 (-)
LOC110498749 s39ab coding downstream 59351 15421293 ~ 15577049 (-)
LOC110499043 NA coding downstream 733344 14899047 ~ 14903056 (-)
vstm4b cj072 coding downstream 772688 14856302 ~ 14863712 (-)
LOC110499039 LOC106589224 coding downstream 790988 14843483 ~ 14845412 (-)
LOC110499049 cops3 coding upstream 15808 15696372 ~ 15707560 (-)
LOC110499050 LOC106589334 coding upstream 76095 15756659 ~ 15758251 (-)
LOC110498752 LOC106589219 coding upstream 224834 15905398 ~ 15907080 (-)
LOC110498753 NA coding upstream 231881 15912445 ~ 15915316 (-)
LOC110499052 LOC106589217 coding upstream 238398 15918962 ~ 16012009 (-)
G1667922 NA non-coding downstream 16957 15609714 ~ 15619443 (-)
G1667916 NA non-coding downstream 221222 15339685 ~ 15415178 (-)
G1667941 NA non-coding downstream 312512 15323655 ~ 15323888 (-)
G1667938 NA non-coding downstream 314637 15321538 ~ 15321763 (-)
G1667572 NA non-coding downstream 340373 15294521 ~ 15296027 (-)
G1668553 NA non-coding upstream 325634 16006198 ~ 16075051 (-)
G1668590 NA non-coding upstream 382309 16062873 ~ 16063197 (-)
G1668606 LOC106589333 non-coding upstream 403637 16084201 ~ 16085870 (-)
LOC110499055 NA non-coding upstream 443504 16124068 ~ 16131054 (-)
G1668757 NA non-coding upstream 642569 16323133 ~ 16323396 (-)
G1667100 LOC106589344 other downstream 738719 14890375 ~ 14897681 (-)
LOC110499033 LOC107708254 other downstream 1001960 14616546 ~ 14647860 (-)
G1666788 NA other downstream 1211086 14424973 ~ 14425314 (-)
G1668767 NA other upstream 656712 16337276 ~ 16337734 (-)
LOC110499060 LOC106589322 other upstream 866784 16547347 ~ 16560741 (-)
G1669343 LOC106589306 other upstream 1073462 16754026 ~ 16795255 (-)
G1669974 NA other upstream 1589219 17269783 ~ 17270148 (-)
LOC110498759 NA other upstream 1748051 17428615 ~ 17434040 (-)

Expression


Co-expression Network