LOC110499050 (LOC106589334)


Basic Information

Item Value
gene id LOC110499050
gene name LOC106589334
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 15756659 ~ 15758251 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021575883.2
GGAAACGACGAGGGAGCACATATTGGAACCACTCTACGCACTCTTACTTCACAATCACGATCAAGAAAATGTCGCCTTCAGAGAACGACTTTGATATACCGGCGAAGAACTGTTGTAGGATGGTGATTTTGGGGTCCACCAAAGTGGGCAAAACAGCCATCGTGTCTCAGTTTCTGAACGGGAGATTCGATGAGCAGTATACGCCGACCATAGAGGACTTTCACAGGAAACTGTACAGCATTAAGGGAGATGTATACCAACTGGACATATTGGATACCTCAGGAAACCACCCATTCCCTGCCATGAGGAGACTATCCATACTGACAGGTGATGTCTTTATCCTGGTCTTCAGCTTAGACAACAGAGACTCATTCGAGGAGGTTCAGAGGCTCAAGCGACAGATAATTGAGATCAAGTCTTGCCTAAAAAACAAGACCAAGGAGAACGTTGACGTGCCTCTGGTTATCTGCGGCAATAAGGGCGACCGGGAGTTTTGCCGGGAGGTGCAGAGTGAAGAGATTGAGCAGTTGGTGGCTGGAGATGAGCAGTGCGcatactttgagatatcagccaaGCGCAACACCAACGTGGACCAAATGTTCCAGACCCTATTCACCATGGCCAAGCTACCCAATGAGATGAGCCCGGACCTCCACCGCAAGGTCTCGGTGCAGTACTGCGACATGCTTCGCACCAAGTCCCTGAAAAATAAGAACAAGAAAAACGATGGAGACGCGTATGGCATCGTGGAACCATTCGCACGGCGCCCGAGCGTCCACAGTGACTTGATGTACATAAAGGAGAAGGCGATCGGTGGCGGGCAGGGAAAGGATAAAGAGAGATGTACTATCAGCTAGGACTATGAGATTAATCTTATGGAAGATATTGTAACCTAAAAGGATATGCTTCATTTGTGATGCACCTGACAGACGGGGTTTGGGCGCGCAAGGCTGCCCATGCCGCTTCCGTTGCCCTTAGTGGGGACACTTGAGACAGCGATGCGAAAGCCTATGAGCTCCAGGCGCAATGATACTGTCTAgattcaacctctccacaaacgTGGAAGCTCATGTTCCATGTCCGCGAGACATTTAAAGAACGTTCGCTACTTTGTTCtgttagaccagagccttatgtgATGTGGCTTAAAATATTGTGAGATTATTCACAACAAATGtgtaaaatgtgttgttttagacATCTTAACAGACAGGCGAGAAAAGACTCCTGGCGTGGAGTACAATGTGaagaatgttgtttacattttGTTATAACATTTTATAACAGATAATTCAACTTGAATGTTGCAATCTGAACAATTTTATATTGTGAATGTATATTTATTATTGTATGTCGACGTCAACTTTTGCAAAGAAAGTAAGAAAAGAActggaaaaaataaatacaaaaatctgAATCTGCTGTTTCT

Function

NR:

description
dexamethasone-induced Ras-related protein 1-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07843 RASD1; RAS, dexamethasone-induced Ras-related protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021575883.2 True 1429 mRNA 0.45 2 15756659 15758251

Neighbor

gene id symbol gene type direction distance location
LOC110499049 cops3 coding downstream 49099 15696372 ~ 15707560 (-)
LOC110498751 LOC106589337 coding downstream 76095 15636400 ~ 15680564 (-)
LOC110499047 NA coding downstream 149124 15596147 ~ 15607535 (-)
LOC110498749 s39ab coding downstream 179610 15421293 ~ 15577049 (-)
LOC110499043 NA coding downstream 853603 14899047 ~ 14903056 (-)
LOC110498752 LOC106589219 coding upstream 147147 15905398 ~ 15907080 (-)
LOC110498753 NA coding upstream 154194 15912445 ~ 15915316 (-)
LOC110499052 LOC106589217 coding upstream 160711 15918962 ~ 16012009 (-)
LOC110498754 NA coding upstream 265817 16024068 ~ 16079159 (-)
LOC110499054 adap1 coding upstream 333563 16091814 ~ 16133094 (-)
G1667922 NA non-coding downstream 137216 15609714 ~ 15619443 (-)
G1667916 NA non-coding downstream 341481 15339685 ~ 15415178 (-)
G1667941 NA non-coding downstream 432771 15323655 ~ 15323888 (-)
G1667938 NA non-coding downstream 434896 15321538 ~ 15321763 (-)
G1668553 NA non-coding upstream 247947 16006198 ~ 16075051 (-)
G1668590 NA non-coding upstream 304622 16062873 ~ 16063197 (-)
G1668606 LOC106589333 non-coding upstream 325950 16084201 ~ 16085870 (-)
LOC110499055 NA non-coding upstream 365817 16124068 ~ 16131054 (-)
G1668757 NA non-coding upstream 564882 16323133 ~ 16323396 (-)
G1667100 LOC106589344 other downstream 858978 14890375 ~ 14897681 (-)
LOC110499033 LOC107708254 other downstream 1122219 14616546 ~ 14647860 (-)
G1668767 NA other upstream 579025 16337276 ~ 16337734 (-)
LOC110499060 LOC106589322 other upstream 789097 16547347 ~ 16560741 (-)
G1669343 LOC106589306 other upstream 995775 16754026 ~ 16795255 (-)
G1669974 NA other upstream 1511532 17269783 ~ 17270148 (-)
LOC110498759 NA other upstream 1670364 17428615 ~ 17434040 (-)

Expression


Co-expression Network