LOC110498753


Basic Information

Item Value
gene id LOC110498753
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 15912445 ~ 15915316 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110498753
ATGCCGGCAAAGTCGGCTGAATTCCGTGAGCTTACGATAACAGAACAATTCACTGAGCCCCTAAAGAGCCTAAGGTATCTGTTTATACAATATCTACTTTTACAATGCAGTTGCGACAATGCTTGGTTTCATAAATAGGTGAAATGGAATCGACAAGTTCAGGTCATGTTTTGGTAATATACCTTTAGCGGGAATAAGTTGCAAAGATAAGCATGGCACTCAGATAGTGTTCATTTACAACTCCCTGGGCCTCTTATTCTTTACACTGGTGGTGCTACTACATCACCTGGTTGGCCAATATCTGATTGCTCTGTTCTACATCACATAGCTGGCTGGAGGATGTTGTGCTTCCGAACAACATCTTTCTGTCCTATAGCGGGAAAGATGAGCGCTGGGTGATGGAGGAGCTTCTGCCCAAACTGTAACAATGAGGTACACCTTTCCTGTGCATGCACAGCAGAGACTTCCAGCTGGGGAAGGACATTGTGAACAACACCACAGAGAGTCGCCACAGCAGTCACCGGTCTGTCTGCTTGGTCAGCCGCTACCACCACAGCAACTGGTGATCATTGGAGAATAAGCTAGCCACTGAATggctttttaaaatgtaa

Function

NR:

description
PREDICTED: toll-like receptor 13

GO:

id name namespace
GO:0042116 macrophage activation biological_process
GO:0031663 lipopolysaccharide-mediated signaling pathway biological_process
GO:0050829 defense response to Gram-negative bacterium biological_process
GO:0034142 toll-like receptor 4 signaling pathway biological_process
GO:0002755 MyD88-dependent toll-like receptor signaling pathway biological_process
GO:0046696 lipopolysaccharide receptor complex cellular_component
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0001875 lipopolysaccharide immune receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110498753 True 611 mRNA 0.45 2 15912445 15915316

Neighbor

gene id symbol gene type direction distance location
LOC110498752 LOC106589219 coding downstream 5365 15905398 ~ 15907080 (-)
LOC110499050 LOC106589334 coding downstream 154194 15756659 ~ 15758251 (-)
LOC110499049 cops3 coding downstream 204885 15696372 ~ 15707560 (-)
LOC110498751 LOC106589337 coding downstream 231881 15636400 ~ 15680564 (-)
LOC110499047 NA coding downstream 304910 15596147 ~ 15607535 (-)
LOC110499052 LOC106589217 coding upstream 3646 15918962 ~ 16012009 (-)
LOC110498754 NA coding upstream 108752 16024068 ~ 16079159 (-)
LOC110499054 adap1 coding upstream 176498 16091814 ~ 16133094 (-)
LOC110499055 NA coding upstream 213595 16124068 ~ 16131054 (-)
LOC110499056 LOC103024569 coding upstream 220036 16135352 ~ 16140816 (-)
G1667922 NA non-coding downstream 293002 15609714 ~ 15619443 (-)
G1667916 NA non-coding downstream 497267 15339685 ~ 15415178 (-)
G1667941 NA non-coding downstream 588557 15323655 ~ 15323888 (-)
G1667938 NA non-coding downstream 590682 15321538 ~ 15321763 (-)
G1668553 NA non-coding upstream 90882 16006198 ~ 16075051 (-)
G1668590 NA non-coding upstream 147557 16062873 ~ 16063197 (-)
G1668606 LOC106589333 non-coding upstream 168885 16084201 ~ 16085870 (-)
G1668757 NA non-coding upstream 407817 16323133 ~ 16323396 (-)
LOC110498749 s39ab other downstream 335754 15421293 ~ 15577049 (-)
G1667100 LOC106589344 other downstream 1014764 14890375 ~ 14897681 (-)
LOC110499033 LOC107708254 other downstream 1278005 14616546 ~ 14647860 (-)
G1668767 NA other upstream 421960 16337276 ~ 16337734 (-)
LOC110499060 LOC106589322 other upstream 632032 16547347 ~ 16560741 (-)
G1669343 LOC106589306 other upstream 838710 16754026 ~ 16795255 (-)
G1669974 NA other upstream 1354467 17269783 ~ 17270148 (-)
LOC110498759 NA other upstream 1513299 17428615 ~ 17434040 (-)

Expression


Co-expression Network