LOC110499052 (LOC106589217)


Basic Information

Item Value
gene id LOC110499052
gene name LOC106589217
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 15918962 ~ 16012009 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021575884.2
AtaggggaaggtagagagagcgagcgagagagagagagagagagctgtcaaGTCTGTTTAGATTTCTGCATAAGCACTGTTTGAACTGGCAGGAGATTTATTCACCAATGGTAATTGCGCTCAACGGACAAGGAAAGCTATACACTCGCATGTGCACTTATCATTTAAAACGATGCGGATATGTCTACAGTCATGATTTTTACGCACCGGTGAAACGTATTTTTTTTTCATATTATAGATTATTCCAAAGAACAAAGGATATTGTCAGATCAGTGAACACCATATTTATAGCCTAGTTATTGCACAACTAATTATATACAACAGGCGGGAATTCCGTTAAAAGTGAAAGATGTCCAGGAAAAAGGCAGTGAAAGGCAAGGGGAGCTCCAAAAGCCCGACTGCATCTCCGAACAAGAGCAAAGACAGCGGGAAAAGTATTAAAGGGATCGGAACCGGGGCTCCATCCAACGGATTGGTATATCCGAGCCGCCCCTCACTCAGCAACAGTAGGGAGTTTTATGATATCACTTTTAAGGTGATGCTGGTGGGAGACTCAGGTGTGGGGAAGACTTGCCTGCTGGTTCGCTTCAAGGACGGAGCTTTCTTGGCCGGCAGCTTTATTTCTACTGTGGGCATAGACTTCAGGAATAAAGTGTTGAACATTGATGCGCTGAAGGTCAAGCTGCAGATCTGGGACACTGCTGGGCAAGAAAGGTTCCGCAGCGTCACACACGCCTACTACCGTGACGCTCAtgCTCTCCTCTTGCTCTACGACGTCACTAACAAGGCCTCCTTTGACAACATCAAGgcATGGCTGACAGAGATCCATGAGTATGCTCAGCAGGACGTGGTGCTAATGCTGCTGGGCAACAAGGCTGATGTGGCACACGAGAgagtggtgaagagagaggagggagagaaactgGCCAAGGTGTTTGGGGTGCCCTTCATGGAAACCAGTGCTAAGTCTGGCCTGAATGTGGAGCTGGCATTCACTGCTGTGGCCAAAGAGCTGAAGCACAGGTCGACGAAGGAGCCTGACGATCCAAAGTTTCAGCTTCAGGATTATGTCAACAAGGAGATGAAAAGCGCTGGCTGCTGCCACTCATAAACctgtcttctgtgtgtgtgtgtgtgtgtggtggggggtatctggtgtgtgtgtgtgtctaccagtatgtcttctgACTTGTGTTTGTGTCATTTTCCTCATGCATGTTGATGCAAGTGCACTGTATttatgaatatgtgtatgtgtgataCATTTAAGTTTTAACAGTGGTGGGCGTGTATGTATGTTGTATGAGTGAATTAATTTTGCATTGCCttctgccccctactgtatgaTAAAAGGGTGACACAAGTTCAGTGCATACATACTGTAAGAATCACAGTCTGTCAGTCAATCATTTTTGTGAAACTCCTTCAGTAAGGAGCACTAAGCAAAGTAGACATCAAACATCAACTTATCAAAGTACACCCACTATATTAAGGTTATCGGCAGAGTACCTACCTCTGCATCATCTTCCACCTCCTCAGATTATTTCTCTTCCTGGTGATATTTTGTGTTCTCATCAGGGCCGAGGACACaatgtcgcttatgcctggagccggccctggTCTTCATCCAAGTCATCCCCCACCCAACTGCAGCTCTCTCCTCACCCACCTCTTCTTGCATCTGTGAATGTATCCAAAATCCATTTGTAGCCTTCACTCTCTTCTCGTTGTCATTCCTCGTTTGGGATTCATCATTCATCATCCACTTGAGTCATTTTGTGCAATATTACTAAGAATGTATGGGGTGTATATATTTGAAATGAAATGTATAATCTGGAGCTTTATAGTTTGCATTACTTGTAAATGGTTGTCTTGTGGACGCCGAATTGAAAATGGAGTCAAGTGATGTAGAAAATCCAGAGATAGTAAAGTAGCAGAAATAGAAACTGTGGGCTGCTTATGCAATTGAAATGTGCATTGAAGCACTATAATATCAATATGGACTGCCGTAACACTTTATGAATGGGTTTTGTTCAAATGTTTgaatgttgttgtatgtgtttcTGTTGTACAGGTTGTCTAACATGTTATATTGATATTCTAGAGGCAAAACCTCTGTCCTGCATTTTAATACAGTATTGTTCAGTATACCTACTTTATTTCAGAAATGCCATGATTTATCACTGTCTTTCTTGTCAGGACCGTTGTATTTTGAGAAGTTTCACTCTGCAAATCTAACCTTTGTATCATTTTACAGCACTTTTTAGTTCACTAGATTCATAATTCTGGGTGTATAAATAGAAATGTATGTATTTGCCTAACGTAAATTATATCGAGTTTCATACTGGTTTTTGTTCATATTTAACTGAAATACAATAATGCTTGACGAAAGAATATTGACGCAATATTGAATTAGGATGTACGGCTTTGACAGCAAATCATTAAATGTTTTGATTATAGATAAGAGTGTAAACCTACTGTACTTCTGTAGTCCACTCAGATACAGtaagtcatattttttatgtaacTTCAATATTCACAATAAAGTTTAAGATGCACAGTA

Function

NR:

description
ras-related protein Rab-26-like

GO: NA

KEGG:

id description
K07913 RAB26; Ras-related protein Rab-26

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021575884.2 True 2563 mRNA 0.42 9 15918962 16012009

Neighbor

gene id symbol gene type direction distance location
LOC110498753 NA coding downstream 3646 15912445 ~ 15915316 (-)
LOC110498752 LOC106589219 coding downstream 11882 15905398 ~ 15907080 (-)
LOC110499050 LOC106589334 coding downstream 160711 15756659 ~ 15758251 (-)
LOC110499049 cops3 coding downstream 211402 15696372 ~ 15707560 (-)
LOC110498751 LOC106589337 coding downstream 238398 15636400 ~ 15680564 (-)
LOC110498754 NA coding upstream 12059 16024068 ~ 16079159 (-)
LOC110499054 adap1 coding upstream 79805 16091814 ~ 16133094 (-)
LOC110499055 NA coding upstream 116902 16124068 ~ 16131054 (-)
LOC110499056 LOC103024569 coding upstream 123343 16135352 ~ 16140816 (-)
LOC110499060 LOC106589322 coding upstream 535338 16547347 ~ 16560741 (-)
G1667922 NA non-coding downstream 299519 15609714 ~ 15619443 (-)
G1667916 NA non-coding downstream 503784 15339685 ~ 15415178 (-)
G1667941 NA non-coding downstream 595074 15323655 ~ 15323888 (-)
G1667938 NA non-coding downstream 597199 15321538 ~ 15321763 (-)
G1668590 NA non-coding upstream 50864 16062873 ~ 16063197 (-)
G1668606 LOC106589333 non-coding upstream 72192 16084201 ~ 16085870 (-)
G1668757 NA non-coding upstream 311124 16323133 ~ 16323396 (-)
G1668759 NA non-coding upstream 312962 16324971 ~ 16325309 (-)
LOC110498749 s39ab other downstream 342271 15421293 ~ 15577049 (-)
G1667100 LOC106589344 other downstream 1021281 14890375 ~ 14897681 (-)
LOC110499033 LOC107708254 other downstream 1284522 14616546 ~ 14647860 (-)
G1668767 NA other upstream 325267 16337276 ~ 16337734 (-)
G1669343 LOC106589306 other upstream 742017 16754026 ~ 16795255 (-)
G1669974 NA other upstream 1257774 17269783 ~ 17270148 (-)
LOC110498759 NA other upstream 1416606 17428615 ~ 17434040 (-)

Expression


Co-expression Network