LOC110499053 (LOC106589333)


Basic Information

Item Value
gene id LOC110499053
gene name LOC106589333
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 16082734 ~ 16085931 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036955886.1
ACCAGATTCCAACAACATTCTcttagcacaacaaaatgtgtcagTATCAAACTGAGATTTCAGAGTTTGGACATTATAACCAATATGACAACTTACAACAGGGTGATAGGTAAGAATTAACATCACGACAAGCGTTTGGGATTTTACATTTTAATTGTTCCTCACTCAGGGCTCCGTGCGTAAAATGCGCATTTGGCACAATCAACAGGCAGCTATATAGACCAAAGCAATTTTTCACTGAACATGACCGAGGAAAAGAGTAAGTCATTCAGCGACCATCCATGTAGTCCAACGGGAACCGCCAGCTCGATGTCGCAGGACGACTCGGATTCGGACGTCCCGTCCTCTCCAACCGGCTCCGATGGACAGGCGCCCGGCAACGGGATAACCCCAAAAATGGACACCAGCGAGGAAGATAAACGGTTTCCCGCGTGCATCCGAGACGCAGTGTCTCAGGTGCTTAACGGATACGACTGGTCGCTCGTACCGATGCCTACACGAGGAGACCGGTCTCTGAAAAACAAACCCCATGTGAAGCGGCCGATGAACGCGTTCATGGTGTGGGCGCAAGCGGCGCGCAGGAAACTAGCTGACCAGTACCCGCATCTCCACAACGCCGAACTCAGCAAGACCTTGGGGAAGCTCTGGCGCCTGCTCTCTGAAAGCGAGAAGAGGCCATTtatggaggaggcagagagactgAGGGTGCAACACAAGAAAGACTACCCTGACTACAAATACCAACCCCGGAGAAGGAAGAGCACCAAGCCAGGCCATCCACATGGTCCCCCCacaccccccaccacccccaaGACAGAGCTGTATCTTGGGCTGAAACATGATGGCCGGCGCCCCCTGGATGGGGGACGGCAGAACATCGACTTCAGCAACTTGGACATCTCTGAGCTGAGCACCGATGTCATCAGCAACATGGATGCCTTTGACGTCCATGAGTTCGACCAGTACCTgccactcaacaagcacagctcCGCCCCGGCGCCTCCGGACCATGGGCACGGGGGTCACGGATCCAACCCCCCCTCTGGGTCCCTCAGCTCCTCCTACGGCCACTCCCACAGCAATGCCTTGCCTTGGGGTCCAAAAGGGGCGGGAGCGGAGGCGGcgctcccctcttcctcctcgtctTCTAGTAACAGCGATGGCCTTCACCACAGAACGCCGATCAAAACGGAGCAGTTGAGTCCCAGCCACTACAGCAGCCAGCACTCCCACAGCTCCTCGCCACCCCACCCCGACTACGCCCCCCTCAGCTCTGGAGGCGGCCCCTCCTCTGCAgccccctcatcctcctcctcccagcccaGCCCCCAGTGTGACTATGCAGACCTCCAGAGCCCCAGCTACTACAGTGCCTACTCCAGCTACCCCGCAGGTCTCTATCAGTACCCCTACTTCCACTCCTCTCGTCACCCCTACGGCAAACCGCTCATCAACAGCGTAGCCATCCCTCCGCCCCACAGCCCCACCTCAAATTGGGAGCAGCCGGTCTATACCACACTCACCAGGCCTTAGACTCAGCATTGACAGCCTATGGTGCCTGATATGGCTTTCTTCTGTTTTTGCTGTGTTAGTGAGGACATGACACAAGGCTCAAGGTTGGACACGATCTAAGAACAACTGCCTGCTGGTTTTGTCAGAATGGACAGAGAATCTCTACCCACATTCATGCATGAATCTTCTGTGGGAAAAATGTGGAACACACTTCTGTTTTGACCACGAAATCACAAATGAATACAATTCTAGATGAACTTTTTATGTGCCTATCTGATGTTCAACTCTTTATCTCAGATTGAATAATTATTGTTTGTATCTATGTTTTATATGAACATGTTTTATATTGGAATGCACATTCCGGCTTAACAAATGCACCAAATGAATAGTAATTCCACTTCTTAGTTACTGTTCATCACTCCAGTGCAGTTCCATTCCTTGTCAGAAAAAGCGCTGGGGACTTTCACTCAAGGCAACAGGTGTTCAGTTCTGTTTCCTACAAATCGAGATGACAAGATTTCAGGGTTGAAGGAAATGAGTAAAATGATATACCATATGCTGTGATTGACTGGACAGCTGGACTGAGGACAGGAACCACCATGCTCGTCATATAGAATGGACCGCTAAGCCCTGAGCATCTGCTGGACTTGTCTTCTTCAAAGGTTGACATGTCCATTCCAGCACAGCAGTTCTGTGCGGATGAAGGCCAAAATGGCTTGTCTTTCTGAAAAGgcaactgcaaaaaaaaaacatggagagACTGCCCAAAGGGCAATCCAGGTTTGGTTATTGGACTTTTATACTTGATATGTCGACTAGATTATTTGTATGCCGGCTCTATGAAAACCAGCTAATATCATTTATATCCGGTGCTTGTAAATGCTTGATGAATTTAGTGCGCATGACCACGCATTTATGCTGTTTTATGTTTACCTTTACCATTAAATAACTGCATTGCAGAGTGTTTTCACCAACAA
>XM_021575885.2
CCAGATTCCAACAACATTCTcttagcacaacaaaatgtgtcagTATCAAACTGAGATTTCAGAGTTTGGACATTATAACCAATATGACAACTTACAACAGGGTGATAGGTAAGAATTAACATCACGACAAGCGTTTGGGATTTTACATTTTAATTGTTCCTCACTCAGGGCTCCGTGCGTAAAATGCGCATTTGGCACAATCAACAGGCAGCTATATAGACCAAAGCAATTTTTCACTGAACATGACCGAGGAAAAGAGTAAGTCATTCAGCGACCATCCATGTAGTCCAACGGGAACCGCCAGCTCGATGTCGCAGGACGACTCGGATTCGGACGTCCCGTCCTCTCCAACCGGCTCCGATGGACAGGCGCCCGGCAACGGGATAACCCCAAAAATGGACACCAGCGAGGAAGATAAACGGTTTCCCGCGTGCATCCGAGACGCAGTGTCTCAGGTGCTTAACGGATACGACTGGTCGCTCGTACCGATGCCTACACGAGGAGACCGGTCTCTGAAAAACAAACCCCATGTGAAGCGGCCGATGAACGCGTTCATGGTGTGGGCGCAAGCGGCGCGCAGGAAACTAGCTGACCAGTACCCGCATCTCCACAACGCCGAACTCAGCAAGACCTTGGGGAAGCTCTGGCGCCTGCTCTCTGAAAGCGAGAAGAGGCCATTtatggaggaggcagagagactgAGGGTGCAACACAAGAAAGACTACCCTGACTACAAATACCAACCCCGGAGAAGGAAGAGCACCAAGCCAGGTCAGTGTAACTCCGACTCCGGGGCTGAGCTGGCCCAATTCCACCCAGGCCAGATGTACAAGGCTGAACCTGGTCTGGCCAGACTGATCTCTATGGGGAATGGGCATAATCATCCAGAGCGGACAGGCCATCCACATGGTCCCCCCacaccccccaccacccccaaGACAGAGCTGTATCTTGGGCTGAAACATGATGGCCGGCGCCCCCTGGATGGGGGACGGCAGAACATCGACTTCAGCAACTTGGACATCTCTGAGCTGAGCACCGATGTCATCAGCAACATGGATGCCTTTGACGTCCATGAGTTCGACCAGTACCTgccactcaacaagcacagctcCGCCCCGGCGCCTCCGGACCATGGGCACGGGGGTCACGGATCCAACCCCCCCTCTGGGTCCCTCAGCTCCTCCTACGGCCACTCCCACAGCAATGCCTTGCCTTGGGGTCCAAAAGGGGCGGGAGCGGAGGCGGcgctcccctcttcctcctcgtctTCTAGTAACAGCGATGGCCTTCACCACAGAACGCCGATCAAAACGGAGCAGTTGAGTCCCAGCCACTACAGCAGCCAGCACTCCCACAGCTCCTCGCCACCCCACCCCGACTACGCCCCCCTCAGCTCTGGAGGCGGCCCCTCCTCTGCAgccccctcatcctcctcctcccagcccaGCCCCCAGTGTGACTATGCAGACCTCCAGAGCCCCAGCTACTACAGTGCCTACTCCAGCTACCCCGCAGGTCTCTATCAGTACCCCTACTTCCACTCCTCTCGTCACCCCTACGGCAAACCGCTCATCAACAGCGTAGCCATCCCTCCGCCCCACAGCCCCACCTCAAATTGGGAGCAGCCGGTCTATACCACACTCACCAGGCCTTAGACTCAGCATTGACAGCCTATGGTGCCTGATATGGCTTTCTTCTGTTTTTGCTGTGTTAGTGAGGACATGACACAAGGCTCAAGGTTGGACACGATCTAAGAACAACTGCCTGCTGGTTTTGTCAGAATGGACAGAGAATCTCTACCCACATTCATGCATGAATCTTCTGTGGGAAAAATGTGGAACACACTTCTGTTTTGACCACGAAATCACAAATGAATACAATTCTAGATGAACTTTTTATGTGCCTATCTGATGTTCAACTCTTTATCTCAGATTGAATAATTATTGTTTGTATCTATGTTTTATATGAACATGTTTTATATTGGAATGCACATTCCGGCTTAACAAATGCACCAAATGAATAGTAATTCCACTTCTTAGTTACTGTTCATCACTCCAGTGCAGTTCCATTCCTTGTCAGAAAAAGCGCTGGGGACTTTCACTCAAGGCAACAGGTGTTCAGTTCTGTTTCCTACAAATCGAGATGACAAGATTTCAGGGTTGAAGGAAATGAGTAAAATGATATACCATATGCTGTGATTGACTGGACAGCTGGACTGAGGACAGGAACCACCATGCTCGTCATATAGAATGGACCGCTAAGCCCTGAGCATCTGCTGGACTTGTCTTCTTCAAAGGTTGACATGTCCATTCCAGCACAGCAGTTCTGTGCGGATGAAGGCCAAAATGGCTTGTCTTTCTGAAAAGgcaactgcaaaaaaaaaacatggagagACTGCCCAAAGGGCAATCCAGGTTTGGTTATTGGACTTTTATACTTGATATGTCGACTAGATTATTTGTATGCCGGCTCTATGAAAACCAGCTAATATCATTTATATCCGGTGCTTGTAAATGCTTGATGAATTTAGTGCGCATGACCACGCATTTATGCTGTTTTATGTTTACCTTTACCATTAAATAACTGCATTGCAGAGTGTTTTCACCAACAA
>TU1908825
TGCTGTGTTAGTGAGGACATGACACAAGGCTCAAGGTTGGACACGATCTAAGAACAACTGCCTGCTGGTTTTGTCAGAATGGACAGAGAATCTCTACCCACATTCATGCATGAATCTTCTGTGGGAAAAATGTGGAACACACTTCTGTTTTGACCACGAAATCACAAATGAATACAATTCTAGATGAACTTTTTATGTGCCTATCTGATGTTCAACTCTTTATCTCAGATTGAATAATTATTGTTTGTATCTATGTTTTATATGAACATGTTTTATATTGGAATGCACATTCCGGCTTAACAAATGCACCAAATGAATAGTAATTCCACTTCTTAGTTACTGTTCATCACTCCAGTGCAGTTCCATTCCTTGTCAGAAAAAGCGCTGGGGACTTTCACTCAAGGCAACAGGTGTTCAGTTCTGTTTCCTACAAATCGAGATGACAAGATTTCAGGGTTGAAGGAAATGAGTAAAATGATATACCATATGCTGTGATTGACTGGACAGCTGGACTGAGGACAGGAACCACCATGCTCGTCATATAGAATGGACCGCTAAGCCCTGAGCATCTGCTGGACTTGTCTTCTTCAAAGGTTGACATGTCCATTCCAGCACAGCAGTTCTGTGCGGATGAAGGCCAAAATGGCTTGTCTTTCTGAAAAGgcaactgcaaaaaaaaaacatggagagACTGCCCAAAGGGCAATCCAGGTTTGGTTATTGGACTTTTATACTTGATATGTCGACTAGATTATTTGTATGCCGGCTCTATGAAAACCAGCTAATATAAATGCTTGATGAATTTAGTGCGCATGACCACGCATTTATGCTGTTTTATGTTTACCTTTACCATTAAATAACTGCATTGCAGAGTGTTTTCACCAACAACAAATTTGGTTAGGAGAAGCTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036955886.1 False 2489 mRNA 0.50 3 16082734 16085908
XM_021575885.2 False 2614 mRNA 0.51 3 16082735 16085908
TU1908825 True 911 lncRNA 0.40 2 16085001 16085931

Neighbor

gene id symbol gene type direction distance location
LOC110499051 LOC106589335 coding upstream 326562 15753278 ~ 15756172 (+)
LOC110499048 LOC106589221 coding upstream 445625 15630588 ~ 15637109 (+)
LOC110499045 LOC106589339 coding upstream 470694 15607645 ~ 15612040 (+)
LOC110499046 LOC106589340 coding upstream 483074 15597289 ~ 15599660 (+)
LOC110499044 LOC106589342 coding upstream 800007 15278768 ~ 15282727 (+)
LOC110499057 LOC106589330 coding downstream 48537 16134445 ~ 16135964 (+)
LOC110499058 LOC106589328 coding downstream 54929 16140837 ~ 16306628 (+)
LOC110499059 LOC106589326 coding downstream 264068 16349976 ~ 16448699 (+)
LOC110498755 LOC106589324 coding downstream 450753 16535724 ~ 16540437 (+)
LOC110499586 LOC106589323 coding downstream 455034 16540942 ~ 16545004 (+)
G1668296 NA non-coding upstream 6842 16075691 ~ 16075892 (+)
G1668288 NA non-coding upstream 19640 16062863 ~ 16063094 (+)
G1668260 NA non-coding upstream 66125 16015971 ~ 16016609 (+)
G1668252 NA non-coding upstream 70719 16005046 ~ 16012015 (+)
G1667862 NA non-coding upstream 221786 15792712 ~ 15860948 (+)
G1668341 NA non-coding downstream 53375 16139283 ~ 16139686 (+)
G1668343 NA non-coding downstream 54535 16140443 ~ 16140720 (+)
G1668451 NA non-coding downstream 235851 16321759 ~ 16322088 (+)
G1668450 NA non-coding downstream 236520 16322428 ~ 16322843 (+)
G1667601 NA other upstream 741550 15339612 ~ 15341184 (+)
G1666308 NA other upstream 1296814 14785592 ~ 14785920 (+)
G1666194 NA other upstream 1458520 14601321 ~ 14624214 (+)
G1665637 LOC106589364 other upstream 2410733 13669172 ~ 13672001 (+)
LOC110499000 hecd2 other upstream 3186991 12861668 ~ 12895798 (+)
LOC110498756 LOC106589319 other downstream 572366 16657491 ~ 16706241 (+)
LOC118941995 LOC105021261 other downstream 1367579 17453487 ~ 17457043 (+)

Expression


Co-expression Network