LOC110499057 (LOC106589330)


Basic Information

Item Value
gene id LOC110499057
gene name LOC106589330
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 16134445 ~ 16135964 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021575892.2
GTTTGTCTACGTCATAACTGTGCTGCGACTGAACTGCGCTATTGCTTGAAATAATCGCGAAGgtcttgtgtttttatttttgataCGTCTCTAACAAAAAGCAATCATGTCGACCGCAATGAACTTTAGCAGTAAGTCTTTTCGGCCCCGTGCTCCAGACAAAGGATCCTTCCCTCTGGATCATTTCGGAGAGTGTAAAGCATTCAAAGAGAAATTCATGAAGTGTTTGAAAGACAACAGCTATGATAACTCCATGTGTCGAGTACAGTCCAAAGACTACCTTGAATGCCGGATGGATAATCAGCTGATGGCCAAGGAACCTCTGGAGAAGCTAGGGTTCAAAGACCTGATGGACAAACCCAGCCAGGAGAACAAGGAGGCTAAACCCTAAACTTTCCTTCCTACACAGATGGATGCTGTCATGCTTGAGTGATATTAGACACGACGATAGCTTCTCTCGTCCACATCTTGTATATAAAATTACAATGTAATATATTGGGGGCAGTGTTTCaagcgttgtgtgtgtgtatataaatattTTTGGGTAAATGAACCATGCTTTGTTTTGCGTTTTGGAATCTTGACAAATGATTTGAGGTGGCTTCTCGGTTCTCAAAGTGGTATGTTTCAAACTTGTGTCCACACGGTACACAATATCGTCCCCCAGTCTAGCTAGCCTACGCATTATGAATAAGTATGCATTATGAGTAAGGAAACATTTTGAATACATGCTTTACTACGTTTCATCAAAGGGCCTTACTAACCACTCAAGGTACTATGGAATGTTGTAGTATGGTGGTGTGAATGAGTCTGACGGAAACCCAGTCATAAATTGTTTCCGAGACTCATTCGTTTTATTGTCAAGACAAATACAAATCAGGCAGCACATGTCAAGCTGGCCTCAAACTAAAAACAGTTTTAATAGTTGCATATGAAAACAAAAAACACTCAATGTACAAAACTATAAAAGTTCCACAAAAATTAGAATTCTGTCAACCACCATTTAGCTCTTTAGGACAAATCACAATGGCTTGAGGATGGGGGGGGTCATTTCACTCCTCTTGACAGTGCTAGCTTGCCTCAAATTGATCCTAGCAACTATTATTATGCTTACAGACCAATAAAAATATACTATGGTGAGA
>TU1908864
CGACTGAACTGCGCTATTGCTTGAAATAATCGCGAAGgtcttgtgtttttatttttgataCGTCTCTAACAAAAAGCAATCATGTCGACCGCAATGAACTTTAGCAGTAAGTCTTTTCGGCCCCGTGCTCCAGACAAAGGATCCTTCCCTCTGGATCATTTCGGAGAGTGTAAAGCATTCAAAGAGAAATTCATGAAGTGTTTGAAAGACAACAGCTATGATAACTCCATGTGTCGAGTACAGTCCAAAGACTACCTTGAATGCCGGATGGATAATCAGCTGATGGCCAAGGAACCTCTGGAGAAGCTAGGGTTCAAAGACCTGATGGACAAACCCAGCCAGGAGAACAAGGAGGCTAAACCCTAAACTTTCCTTCCTACACAGATGGATGCTGTCATGCTTGAGTGATATTAGACACGACGATAGCTTCTCTCGTCCACATCTTGTATATAAAATTACAATGTAATATATTGGGGGCAGTGTTTCaagcgttgtgtgtgtgtatataaatattTTTGGGTAAATGAACCATGCTTTGTTTTGCGTTTTGGAATCTTGACAAATGATTTGAGGTGGCTTCTCGGTTCTCAAAGTGGTATGTTTCAAACTTGTGTCCACACGGTACACAATATCGTCCCCCAGTCTAGCTAGCCTACGCATTATGAATAAGTATGCATTATGAGTAAGGAAACATTTTGAATACATGCTTTACTACGTTTCATCAAAGGGCCTTACTAACCACTCAAGGTACTATGGAATGTTGTAGTATGGTGGTGTGAATGAGTCTGACGGAAACCCAGTCATAAATTGTTTCCGAGACTCATTCGTTTTATTGTCAAGACAAATACAAATCAGGCAGCACATGTCAAGCTGGCCTCAAACTAAAAACAGTTTTAATAGTTGCATATGAAAACAAAAAA

Function

NR:

description
cytochrome c oxidase assembly protein COX19

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021575892.2 False 1142 mRNA 0.40 3 16134445 16135964
TU1908864 True 920 TUCP 0.40 3 16134470 16135767

Neighbor

gene id symbol gene type direction distance location
LOC110499053 LOC106589333 coding upstream 48537 16082734 ~ 16085931 (+)
LOC110499051 LOC106589335 coding upstream 378273 15753278 ~ 15756172 (+)
LOC110499048 LOC106589221 coding upstream 497336 15630588 ~ 15637109 (+)
LOC110499045 LOC106589339 coding upstream 522405 15607645 ~ 15612040 (+)
LOC110499046 LOC106589340 coding upstream 534785 15597289 ~ 15599660 (+)
LOC110499058 LOC106589328 coding downstream 4873 16140837 ~ 16306628 (+)
LOC110499059 LOC106589326 coding downstream 214012 16349976 ~ 16448699 (+)
LOC110498755 LOC106589324 coding downstream 400697 16535724 ~ 16540437 (+)
LOC110499586 LOC106589323 coding downstream 404978 16540942 ~ 16545004 (+)
LOC110499061 grn coding downstream 424884 16560848 ~ 16592647 (+)
G1668296 NA non-coding upstream 58553 16075691 ~ 16075892 (+)
G1668288 NA non-coding upstream 71351 16062863 ~ 16063094 (+)
G1668260 NA non-coding upstream 117836 16015971 ~ 16016609 (+)
G1668252 NA non-coding upstream 122430 16005046 ~ 16012015 (+)
G1668341 NA non-coding downstream 3319 16139283 ~ 16139686 (+)
G1668343 NA non-coding downstream 4479 16140443 ~ 16140720 (+)
G1668451 NA non-coding downstream 185795 16321759 ~ 16322088 (+)
G1668450 NA non-coding downstream 186464 16322428 ~ 16322843 (+)
G1667601 NA other upstream 793261 15339612 ~ 15341184 (+)
G1666308 NA other upstream 1348525 14785592 ~ 14785920 (+)
G1666194 NA other upstream 1510231 14601321 ~ 14624214 (+)
G1665637 LOC106589364 other upstream 2462444 13669172 ~ 13672001 (+)
LOC110499000 hecd2 other upstream 3238702 12861668 ~ 12895798 (+)
LOC110498756 LOC106589319 other downstream 522310 16657491 ~ 16706241 (+)
LOC118941995 LOC105021261 other downstream 1317523 17453487 ~ 17457043 (+)
G1670091 NA other downstream 1436867 17572831 ~ 17577262 (+)

Expression


Co-expression Network