LOC110499058 (LOC106589328)


Basic Information

Item Value
gene id LOC110499058
gene name LOC106589328
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 16140837 ~ 16306628 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036955889.1
ACGTGGTATTTCACAAGACGCACAGCTCCCTCTGGTGTTGCTTATTGGAATAGGACATTATTTGGAGTGAAAGTTTCGACAGTCCACATTGGAAGAACCAATTAATTAACAGTTGCTGTTTTCTTACCGGGTAAAATGTGTTGTAACCCAACACGGAAGTGACGGCTCGCATTCGCAGAAAGCGTTGTTTTGCTTCATCTTCAGCTAACTTTCAGCCAAGTAGACACCTCTTTCACACTCAAACGTCAAAATGTCTTCAGACTTTGAAGCCTACGAACAGGACTTTGGAACCCTGACAGCAGAAATAACAAACAAAATTGGAAGGATTCCCAAATTAGGTGGAAAGGAGAAGACACAGCTGGTTCTAAATGTCGACAAACAGCTTGAAGAAGTCAGAGAATTGATGGAGCAGATGGATCTGGAGGTGCGTGAGATCCCCATCCAGTGCAGAGGCATGTACCAGAGCAGACTGAAGAGCTACAAGGGGGAGATGGAAAAGCTGGAGAAAGACTTTAAAAGGTCACGAATCGCCTACAGTGATGACGTGCGGAACGAGCTCCTGGGGGAAGACGCTGGCTCCTCGGAGAGTCAGAGAGCACATCTGTTGGACAACACAGAGAAGCTGGAAAGGTCATCTCGGAGGCTGGAAGCTGGCTACCAGATAGCAGTGGAAACCGGAGCACATCAAAGGcaagcaagggggagagaggtgtacgGGCGACAGAGCAGGCGCCGCTGCTCCTCGTTTGGCTCCTGGGAAAAACACACGCTCTTCTCCCCTgcatctgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagttgtttTTTATAGCGCCAAAAAGACAGGGGTCTACTGAAATAAACAACATCAGCGTTTCCTCCACTAGTTCTTAATTTAGAGACCCAAACAAAGCACAATAAACATCACTGAATACATGGCCATCTCGAACAGAAAGTCATGTGTTTTCCTCATTACCAaggttagttttttttttttatctttaaaTATGGAGAAATTATCTCATTTGGATTTGAAATAGATTAAACCAGTTATTCGTTTTTTCTCCTCCTGACAGTCACAACATTATTGAGTCACAGTGTATTCCTTAGAGAGATATCAAAGCTCATTCTTGAAGAATCAACTGGCTTTCTGTGGCTTCCGCAGTAGTTTTGAAAAAGTTTTGTTCATTTACACTATAATGGAGGAATGGCGCGCGTGTGACATCGACCGATTTAATCATTCACGTCGAGAAAGGGGTGCACAGACCACTGCCTTTTGATGTTCAGTAAGTAGAACTCACAAATTCATAAATACAATCTGCATTCTCTGCTTAAAAATGTTGTTTCATATGATTCTCTGATGATCTCCGAGACTTATATTATTCTTGTTTTCCCCGTGTCGAACTCTGTGGCAGACCCTATTTTGATTCCATTCAGTCACGTATTTCAGTTGAATGGCTCTTTTTGATGGTTTGTCTAGTGTGTTGGTTGGTGTTAAAGAAATGGTCCGTGTTCTACCCGTGTTCTCTACCTCCCGGGCCTATTACTTTCCACAGTAAGGGCCAGTCATGCGCCCTCTGAACCCTCATCTGCCCTGTTTGTGCGGCTAACTGAGAACAATGGTTGTTTATCCTGGTCCCACACACACTGCTCACTGCTCAGGTCTACACCAGCAGAGAGTTGTTTGGGGTTTGGTGGGGTGTGAGCCTTTGTCACCTCGTGTTTAATctgtg
>XM_036955887.1
GTGGTATTTCACAAGACGCACAGCTCCCTCTGGTGTTGCTTATTGGAATAGGACATTATTTGGAGTGAAAGTTTCGACAGTCCACATTGGAAGAACCAATTAATTAACAGTTGCTGTTTTCTTACCGGGTAAAATGTGTTGTAACCCAACACGGAAGTGACGGCTCGCATTCGCAGAAAGCGTTGTTTTGCTTCATCTTCAGCTAACTTTCAGCCAAGTAGACACCTCTTTCACACTCAAACGTCAAAATGTCTTCAGACTTTGAAGCCTACGAACAGGACTTTGGAACCCTGACAGCAGAAATAACAAACAAAATTGGAAGGATTCCCAAATTAGGTGGAAAGGAGAAGACACAGCTGGTTCTAAATGTCGACAAACAGCTTGAAGAAGTCAGAGAATTGATGGAGCAGATGGATCTGGAGGTGCGTGAGATCCCCATCCAGTGCAGAGGCATGTACCAGAGCAGACTGAAGAGCTACAAGGGGGAGATGGAAAAGCTGGAGAAAGACTTTAAAAGGTCACGAATCGCCTACAGTGATGACGTGCGGAACGAGCTCCTGGGGGAAGACGCTGGCTCCTCGGAGAGTCAGTTGATGAAGTTAAGTGAAGAGAGAGCACATCTGTTGGACAACACAGAGAAGCTGGAAAGGTCATCTCGGAGGCTGGAAGCTGGCTACCAGATAGCAGTGGAAACCGAACAAGTGGGCCAAGAGATCCTGGCTAACTTGCACAGTGACCGCGAGAAGATCCAGAGATCCAGAGACCGGCTGAGAGAGACCGACGTCAACCTGGGCAAGAGCTCCCGCATCCTAACGGGAATGCTGAGAAGAATCATCCAGAACCGAGTCCTGGTCTTCGTCCTCGGCGCCACCATCCTCCTCACCATCATTCTGGCCATCTATTTCAATGTGCGAGGGCACTGATCTCCCTcaatgctctcacacacacacacgcactccgtctcacacacacacaaaacacgcaCCCGCATGATTAATAGCGACAAAAGTGTTTGCTCTGGAGTAATTAGAACAAATGGTGCCCATGAATCACTCTTTCTGGGCCCTGacaggggtctctctctctctcactcgctttcTCTCTGAGACAGCCCCCCTCTGTGTCTTTTATTGCTATTGATAATATTCATGGTGTCGTCGTCACTGGACTGCGTTTAGCGTTGGGTAGAGAGGGCCTGTAGGGGATTCAAAAAGTCTAGACGGGTTCAAATATGTACAACTTCCTACTGTTGTTCATTAGCCACGTCCATGGTCTGACCTACTGTTCTAAACACTGTTGTAGAAAAATCATGTTTTAGAATTGATGATAGATTTTTGGGATTAGCGTTAAAGATTATGTGAGTGTATATTTTATGAAGTCTAT
>XM_036955888.1
TATTTCACAAGACGCACAGCTCCCTCTGGTGTTGCTTATTGGAATAGGACATTATTTGGAGTGAAAGTTTCGACAGTCCACATTGGAAGAACCAATTAATTAACAGTTGCTGTTTTCTTACCGGGTAAAATGTGTTGTAACCCAACACGGAAGTGACGGCTCGCATTCGCAGAAAGCGTTGTTTTGCTTCATCTTCAGCTAACTTTCAGCCAAGTAGACACCTCTTTCACACTCAAACGTCAAAATGTCTTCAGACTTTGAAGCCTACGAACAGGACTTTGGAACCCTGACAGCAGAAATAACAAACAAAATTGGAAGGATTCCCAAATTAGGTGGAAAGGAGAAGACACAGCTGGTTCTAAATGTCGACAAACAGCTTGAAGAAGTCAGAGAATTGATGGAGCAGATGGATCTGGAGGTGCGTGAGATCCCCATCCAGTGCAGAGGCATGTACCAGAGCAGACTGAAGAGCTACAAGGGGGAGATGGAAAAGCTGGAGAAAGACTTTAAAAGGTCACGAATCGCCTACAGTGATGACGTGCGGAACGAGCTCCTGGGGGAAGACGCTGGCTCCTCGGAGAGTCAGAGAGCACATCTGTTGGACAACACAGAGAAGCTGGAAAGGTCATCTCGGAGGCTGGAAGCTGGCTACCAGATAGCAGTGGAAACCGAACAAGTGGGCCAAGAGATCCTGGCTAACTTGCACAGTGACCGCGAGAAGATCCAGAGATCCAGAGACCGGCTGAGAGAGACCGACGTCAACCTGGGCAAGAGCTCCCGCATCCTAACGGGAATGCTGAGAAGAATCATCCAGAACCGAGTCCTGGTCTTCGTCCTCGGCGCCACCATCCTCCTCACCATCATTCTGGCCATCTATTTCAATGTGCGAGGGCACTGATCTCCCTcaatgctctcacacacacacacgcactccgtctcacacacacacaaaacacgcaCCCGCATGATTAATAGCGACAAAAGTGTTTGCTCTGGAGTAATTAGAACAAATGGTGCCCATGAATCACTCTTTCTGGGCCCTGacaggggtctctctctctctcactcgctttcTCTCTGAGACAGCCCCCCTCTGTGTCTTTTATTGCTATTGATAATATTCATGGTGTCGTCGTCACTGGACTGCGTTTAGCGTTGGGTAGAGAGGGCCTGTAGGGGATTCAAAAAGTCTAGACGGGTTCAAATATGTACAACTTCCTACTGTTGTTCATTAGCCACGTCCATGGTCTGACCTACTGTTCTAAACACTGTTGTAGAAAAATCATGTTTTAGAATTGATGATAGATTTTTGGGATTAGCGTTAAAGATTATGTGAGTGTATATTTTATGAAGTCTAT
>XM_036955890.1
TTCACAAGACGCACAGCTCCCTCTGGTGTTGCTTATTGGAATAGGACATTATTTGGAGTGAAAGTTTCGACAGTCCACATTGGAAGAACCAATTAATTAACAGTTGCTGTTTTCTTACCGGGTAAAATGTGTTGTAACCCAACACGGAAGTGACGGCTCGCATTCGCAGAAAGCGTTGTTTTGCTTCATCTTCAGCTAACTTTCAGCCAAGTAGACACCTCTTTCACACTCAAACGTCAAAATGTCTTCAGACTTTGAAGCCTACGAACAGGACTTTGGAACCCTGACAGCAGAAATAACAAACAAAATTGGAAGGATTCCCAAATTAGGTGGAAAGGAGAAGACACAGCTGGTTCTAAATGTCGACAAACAGCTTGAAGAAGTCAGAGAATTGATGGAGCAGATGGATCTGGAGGTGCGTGAGATCCCCATCCAGTGCAGAGGCATGTACCAGAGCAGACTGAAGAGCTACAAGGGGGAGATGGAAAAGCTGGAGAAAGACTTTAAAAGGTCACGAATCGCCTACAGTGATGACGTGCGGAACGAGCTCCTGGGGGAAGACGCTGGCTCCTCGGAGAGTCAGAGAGCACATCTGTTGGACAACACAGAGAAGCTGGAAAGGTCATCTCGGAGGCTGGAAGCTGGCTACCAGATAGCAGTGGAAACCGAACAAGTGGGCCAAGAGATCCTGGCTAACTTGCACAGTGACCGCGAGAAGATCCAGAGATCCAGAGACCGGCTGAGAGAGACCGACGTCAACCTGGGCAAGAGCTCCCGCATCCTAACGGGAATGCTGAGAAGGTAAGAGGCAGAATCATCCAGAACCGAGTCCTGGTCTTCGTCCTCGGCGCCACCATCCTCCTCACCATCATTCTGGCCATCTATTTCAATGTGCGAGGGCACTGATCTCCCTcaatgctctcacacacacacacg
>TU1908875
GCGTTGTTTTGCTTCATCTTCAGCTAACTTTCAGCCAAGTAGACACCTCTTTCACACTCAAACGTCAAAATGTCTTCAGACTTTGAAGCCTACGAACAGGACTTTGGAACCCTGACAGCAGAAATAACAAACAAAATTGGAAGGATTCCCAAATTAGGTGGAAAGGAGAAGACACAGCTGGTTCTAAATGTCGACAAACAGCTTGAAGAAGTCAGAGAATTGATGGAGCAGATGGATCTGGAGGTGCGTGAGATCCCCATCCAGTGCAGAGGCATGTACCAGAGCAGACTGAAGAGCTACAAGGGGGAGATGGAAAAGCTGGAGAAAGACTTTAAAAGGTCACGAATCGCCTACAGTGATGACGTGCGGAACGAGCTCCTGGGGGAAGACGCTGGCTCCTCGGAGAGTCAGAGAGCACATCTGTTGGACAACACAGAGAAGCTGGAAAGGTCATCTCGGAGGCTGGAAGCTGGCTACCAGATAGCAGTGGAAACCGAACAAGTGGGCCAAGAGATCCTGGCTAACTTGCACAGTGACCGCGAGAAGATCCAGAGATCCAGAGACCGGAATCATCCAGAACCGAGTCCTGGTCTTCGTCCTCGGCGCCACCATCCTCCTCACCATCATTCTGGCCATCTATTTCAATGTGCGAGGGCACTGATCTCCCTcaatgctctcacacacacacacgcactccgtctcacacacacacaa
>TU1908877
GCGTTGTTTTGCTTCATCTTCAGCTAACTTTCAGCCAAGTAGACACCTCTTTCACACTCAAACGTCAAAATGTCTTCAGACTTTGAAGCCTACGAACAGGACTTTGGAACCCTGACAGCAGAAATAACAAACAAAATTGGAAGGATTCCCAAATTAGGTGGAAATAGCTGATTAGACTATTCTTCAGAGGATGACTAATTATACCAAGGTCCATGTACACCTCGCTAGACTGCTTGTCCCTCTGCCAGTGATGGGCACCTTTCCTTACAAGAAAAGCGAGGGTGACTCAACTGAAGGGGAATGGGTCTAAGAAGAGGACATTTGGTATCAATGCTAGGGGTGGCACAATTACCGTATAACCGG
>TU1908878
GCGTTGTTTTGCTTCATCTTCAGCTAACTTTCAGCCAAGTAGACACCTCTTTCACACTCAAACGTCAAAATGTCTTCAGACTTTGAAGCCTACGAACAGGACTTTGGAACCCTGACAGCAGAAATAACAAACAAAATTGGAAGGATTCCCAAATTAGGTGGAAAGGAGAAGACACAGCTGGTTCTAAATGTCGACAAACAGCTTGAAGAAGTCAGAGAATTGATGGAGCAGATGGATCTGGAGGTGCGTGAGATCCCCATCCAGTGCAGAGGCATGTACCAGAGCAGACTGAAGAGCTACAAGGGGGAGATGGAAAAGCTGGAGAAAGACTTTAGTTTGAACCATCCATAAGTTCAACAGTCCCTTCACGGTGGATTTTACATTGAGGAGGCAAGACTATTTTTTTTCTCGTCCAGTTTATGGCACTGGTCGAGCGTgacaaacacttttttttaattttttttaggcTGAATGGCTTCAAGTCTCTCTATCCAGGGAGATAATTCATGTATTTCTGAAGCTTTTACGGAGTCAACCAGCCTTGAAATAATGAACAATTGAATCACCTGATACAGTCAGATGAATGGAATAAAAAGCGTTCTTCTGCACCGATCCCATCTGTGTAACAGCCTTTTTTTTTCATATTTCACCGTCTCTTAAGTGATTATTAATGACCTTCAAGTGGAAGTATTAATAAttcaatgaaaatgtgttctaTGTTAGGGAAACTATTGAATTCCATACCTATGCAGTGAGC

Function

NR:

description
vesicle transport through interaction with t-SNAREs homolog 1A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036955889.1 False 1740 mRNA 0.45 7 16140837 16200552
XM_036955887.1 False 1383 mRNA 0.47 10 16140839 16306628
XM_036955888.1 False 1358 mRNA 0.47 9 16140843 16306628
XM_036955890.1 False 936 mRNA 0.49 9 16140846 16306198
TU1908875 False 714 TUCP 0.50 7 16141278 16306221
TU1908877 False 363 lncRNA 0.44 2 16141278 16143407
TU1908878 True 757 TUCP 0.40 4 16141278 16156285

Neighbor

gene id symbol gene type direction distance location
LOC110499057 LOC106589330 coding upstream 4873 16134445 ~ 16135964 (+)
LOC110499053 LOC106589333 coding upstream 54929 16082734 ~ 16085931 (+)
LOC110499051 LOC106589335 coding upstream 384665 15753278 ~ 15756172 (+)
LOC110499048 LOC106589221 coding upstream 503728 15630588 ~ 15637109 (+)
LOC110499045 LOC106589339 coding upstream 528797 15607645 ~ 15612040 (+)
LOC110499059 LOC106589326 coding downstream 43348 16349976 ~ 16448699 (+)
LOC110498755 LOC106589324 coding downstream 230033 16535724 ~ 16540437 (+)
LOC110499586 LOC106589323 coding downstream 234314 16540942 ~ 16545004 (+)
LOC110499061 grn coding downstream 254220 16560848 ~ 16592647 (+)
LOC110499062 arf1l coding downstream 298423 16605051 ~ 16611216 (+)
G1668343 NA non-coding upstream 117 16140443 ~ 16140720 (+)
G1668341 NA non-coding upstream 1151 16139283 ~ 16139686 (+)
G1668296 NA non-coding upstream 64945 16075691 ~ 16075892 (+)
G1668288 NA non-coding upstream 77743 16062863 ~ 16063094 (+)
G1668451 NA non-coding downstream 15131 16321759 ~ 16322088 (+)
G1668450 NA non-coding downstream 15800 16322428 ~ 16322843 (+)
G1668447 NA non-coding downstream 25762 16332390 ~ 16332654 (+)
G1668445 NA non-coding downstream 29033 16335661 ~ 16336486 (+)
G1668453 NA non-coding downstream 30994 16337622 ~ 16338014 (+)
G1667601 NA other upstream 799653 15339612 ~ 15341184 (+)
G1666308 NA other upstream 1354917 14785592 ~ 14785920 (+)
G1666194 NA other upstream 1516623 14601321 ~ 14624214 (+)
G1665637 LOC106589364 other upstream 2468836 13669172 ~ 13672001 (+)
LOC110498756 LOC106589319 other downstream 351646 16657491 ~ 16706241 (+)
LOC118941995 LOC105021261 other downstream 1146859 17453487 ~ 17457043 (+)
G1670091 NA other downstream 1266203 17572831 ~ 17577262 (+)
G1670125 LOC105007702 other downstream 1410408 17717036 ~ 17812707 (+)

Expression


Co-expression Network