LOC110498755 (LOC106589324)


Basic Information

Item Value
gene id LOC110498755
gene name LOC106589324
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 16535724 ~ 16540437 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036955896.1
TATAGGTAAACTAGCACTTGCGGGGGAAAAAGATTAGCCTATGGTTTGAGAGACAATGGGAATGGTCAGTGACGTTTAAAAAGGTAACATCTAGTCACTATGACGCAACAGAGCACTCTTGTCAGTAGAAGAGTATAAAAGGCCCTATGACCCTGTTGGAGGCTACGGTGCCACGATCAAGCCCTCCAACCATGGGAAAGATTATCTTTTACGAAGGCCACAACTTCCAGGGCCGTCATTATGAGTGCAACAGCGATTGTGCTGACACCTTCAGGCACTTCAACTCCTGTAACTCTATCAGGGTGACCGGCGGTCACTGGGTGGCCTACGAGAAGTCCAACTTCAACGGCTACCAGTACATCCTGAACCAGGGCGAGTACCCAGACTACCACCACTGGATGGGCTTCAACAACTGCATCCGTTCCTGCCAGATGTTCCCCCCCTACAGAGGAGCCTACAGGATGAGGATCTACAACAGGCCCGagatgtctggtcacatgatgGAGTTCATGGACGACTGCCCCAACGTGTACGAGCGTTTCCGCCACCGTGACATCTTCTCCTCCAATGTCATGGAAGGCTACTGGGTGTTCTATGAGCACCCCAACTACAGGGGTCGTCAGTATTTCCTCCGCCCCGGCGAGTACAGGGCTTGCAGCGATTGGGGCTGCCACAACCCCATGGTGGGCTCCTTCAGGAGAATGAGGAGTGGCCTGTAAGCTTCTCACCTATGGACTGTAACAAAGTGATTAAACGTGCTGGTTTTAAAACA
>TU1909447
GAAACATTAAATCTATTGAAGCCTATGGGAATTTCAAGGCAatgattgattaaaaaaataaaagcttaTCAACATGAGTCACATTTGGTTAGAGAAACTACCAGAGTAGCAGGTTTTTGCCCGGGAACCGAAAGGCTATTGTGTTTCAGAAAGCATTGTCTTTCTGCAGAGTTGAAGCAGAAAGAAGCATACAATgttagagagaggacatgggctctTTATCCTCATGAAAGGTTAAAGGATGAGACTGACCTTTCTAGCATCAGCTGGGCTTTGGGAACAGAACACACAGGGGCAACTCTTTCTGGCTTTTTCCCTTCCGCTCTGGGGTATGTTTTACAAGCCAAAGACAGAAGTCCAAAGCACTATTGCTTTTCACATAGACTCAGACACACAACTATGCCCTccttttgacacacacacacaccacagaacacTGTTATCTGTACATGGCATCAGAGTAGGTCTGCAGGCTATGGAAGCAAAAAGAGAACATATCACTCTAGATTACATCAACACAAGAGCTTGATTCAATCAATATCATCAGaatcacttacacacacacacacaggtctatgAACAGAACACAACCGAGACTTCGTGACCTGCGATCAGGGAGAGGGAAAACATGAACCCACACCAAAATAAACTCTGATAAACCATTTGCATTTTCATAACATTCTATTACCAACGTTCAATAATCTTTTTCACATCAACCCCAAATATTTGTAGAAGATATGGCTTTGTTTTGTTTACTAGAGAGTACATGAACCGTCTCACCTCCTGTAAACGTTAAAGGTTCTGTTGTTCACACTACATACCTAAAGGCCTTTTGTGTGATGTTTCAATGAGTGCATCACTAGGCCATGGCTGAACAAGGGTCTGTgtacagaaaacatagaatgggGCAGCTATATGGGGTGGATGTTATATATTGTATAGGTAAACTAGCACTTGCGGGGGAAAAAGATTAGCCTATGGTTTGAGAGACAATGGGAATGGTCAGTGACGTTTAAAAAGGTAACATCTAGTCACTATGACGCAACAGAGCACTCTTGTCAGTAGAAGAGTATAAAAGGCCCTATGACCCTGTTGGAGGCTACGGTGCCACGATCAAGCCCTCCAACCATGGGAAAGGGTGACCGGCGGTCACTGGGTGGCCTACGAGAAGTCCAACTTCAACGGCTACCAGTACATCCTGAACCAGGGCGAGTACCCAGACTACCACCACTGGATGGGCTTCAACAACTGCATCCGTTCCTGCCAGATGTTCCCCCCCTACAGAGGAGCCTACAGGATGAGGATCTACAACAGGCCCGagatgtctggtcacatgatgGAGTTCATGGACGACTGCCCCAACGTGTACGAGCGTTTCCGCCACCGTGACATCTTCTCCTCCAATGTCATGGAAGGCTACTGGGTGTTCTATGAGCACCCCAACTACAGGGGTCGTCAGTATTTCCTCCGCCCCGGCGAGTACAGGGCTTGCAGCGATTGGGGCTGCCACAACCCCATGGTGGGCTCCTTCAGGAGAATGAGGAGTGGCCTGTAAGCTTCTCACCTATGGACTGTAACAAAGTGATTAAACGTGCTGGTTTTAAAACA

Function

NR:

description
gamma-crystallin M2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036955896.1 False 772 mRNA 0.52 3 16536661 16540437
TU1909447 True 1608 TUCP 0.46 3 16535724 16540437

Neighbor

gene id symbol gene type direction distance location
LOC110499059 LOC106589326 coding upstream 87962 16349976 ~ 16448699 (+)
LOC110499058 LOC106589328 coding upstream 230033 16140837 ~ 16306628 (+)
LOC110499057 LOC106589330 coding upstream 400697 16134445 ~ 16135964 (+)
LOC110499053 LOC106589333 coding upstream 450753 16082734 ~ 16085931 (+)
LOC110499051 LOC106589335 coding upstream 780489 15753278 ~ 15756172 (+)
LOC110499586 LOC106589323 coding downstream 505 16540942 ~ 16545004 (+)
LOC110499061 grn coding downstream 20411 16560848 ~ 16592647 (+)
LOC110499062 arf1l coding downstream 64614 16605051 ~ 16611216 (+)
grb7 LOC106589320 coding downstream 81334 16621771 ~ 16637170 (+)
LOC110498756 LOC106589319 coding downstream 117054 16657491 ~ 16706241 (+)
G1668836 NA non-coding upstream 50281 16486105 ~ 16486380 (+)
G1668821 LOC106573797 non-coding upstream 83257 16452989 ~ 16453404 (+)
G1668458 NA non-coding upstream 193613 16342817 ~ 16343048 (+)
G1668457 NA non-coding upstream 194042 16342200 ~ 16342619 (+)
G1668456 NA non-coding upstream 194820 16341613 ~ 16341841 (+)
G1668860 NA non-coding downstream 6946 16547383 ~ 16548670 (+)
G1668867 NA non-coding downstream 74299 16614736 ~ 16614969 (+)
G1668923 NA non-coding downstream 75363 16615800 ~ 16616015 (+)
G1668926 yo84 non-coding downstream 77975 16618412 ~ 16618683 (+)
G1668930 NA non-coding downstream 98100 16638537 ~ 16638927 (+)
G1667601 NA other upstream 1195477 15339612 ~ 15341184 (+)
G1666308 NA other upstream 1750741 14785592 ~ 14785920 (+)
G1666194 NA other upstream 1912447 14601321 ~ 14624214 (+)
LOC118941995 LOC105021261 other downstream 913050 17453487 ~ 17457043 (+)
G1670091 NA other downstream 1032394 17572831 ~ 17577262 (+)
G1670125 LOC105007702 other downstream 1176599 17717036 ~ 17812707 (+)
G1670129 NA other downstream 1211857 17752294 ~ 17760812 (+)

Expression


Co-expression Network