LOC110499586 (LOC106589323)


Basic Information

Item Value
gene id LOC110499586
gene name LOC106589323
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 16540942 ~ 16545004 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576717.2
GTATTCTGTAGTCTGTAGAGCACATTGTGCTGACGCAACAAAGCTTTGTGCCACAATTTCAAAGCCCTGATCCCTGCAGGGTCTATAAAGAGGTCCAGTAACGCTCGCTACCTAGTCCGGTCCGAACTAAACACAGTCACAATGGGAAAGATAATCTTCTACGAGGACAAGAACTTCCAGGGCCGGCACTATGAGTGCAGCAGCGACTGTGCTGAGATGCACAACCACTTCAGCCGCTGTAACTCCATAAAGGTGGACAGTGGCTGTTGGGTGGCCTACGAGAAGCCCAACTACACTGGCTACCAATACATGCTGAACAAGGGCGAGTACCCTGACTACCAGCGATGGGCTGGCTTCAACGACTGCATCCGCTCCTGCCGTATGGTGCCCCCTTATCATGGAAACTATAGGATGAAGATCTACGAGCGCTCTGACTTCGGTGGTCAGAACATGGAGGTGATGGAGGACTGCCCCGACCTTCACGAGCGCTTCCACAGCCGAGACATCTCCTCCGCCAACGTCATAGAGGGTTACTGGATCCTCCACGAGCACCCCCACTACAGGGGTCGTCAGTACTTCCTTCGTCCTGGCGAGTACAGGAGGCACAGCGAGTGGGGAAGCTCCAGCCCCACCATCGGCTCCCTGAGACGGGTCACCGAGATCCCCTGAAGGTCAACTGAgaccccctcatcctctcctaaTGCAATCCGATTATAAATCCTGTACTGTACCCCTACCCTTTATTGCTAGCATTGTTTGACTGTTGTGTATCTACTGTGGTGTATCTACTGTGGTCTTCTGACCCTGAAATCACATTAGCGTGATTGGGGGTTTTGGACCAGTTGGTGTTGGGTCTTTGCTGCTTTGCTTAGACTGGGAAAGTAGACCTCGGGGCTCAGGCGATGCTCGTATGGTAACAGTGATGGACTCTCTGGCTTTTGTTGTTACAGAGCAGAATGATGTGCTTTGCCAGTCCTCAACCTCCTGTCCTATTATAAGCAAAATAAATGAAAATTTGATCAAAGTA

Function

NR:

description
gamma-crystallin M2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576717.2 True 1027 mRNA 0.51 3 16540942 16545004

Neighbor

gene id symbol gene type direction distance location
LOC110498755 LOC106589324 coding upstream 505 16535724 ~ 16540437 (+)
LOC110499059 LOC106589326 coding upstream 92243 16349976 ~ 16448699 (+)
LOC110499058 LOC106589328 coding upstream 234314 16140837 ~ 16306628 (+)
LOC110499057 LOC106589330 coding upstream 404978 16134445 ~ 16135964 (+)
LOC110499053 LOC106589333 coding upstream 455034 16082734 ~ 16085931 (+)
LOC110499061 grn coding downstream 15844 16560848 ~ 16592647 (+)
LOC110499062 arf1l coding downstream 60047 16605051 ~ 16611216 (+)
grb7 LOC106589320 coding downstream 76767 16621771 ~ 16637170 (+)
LOC110498756 LOC106589319 coding downstream 112487 16657491 ~ 16706241 (+)
LOC100135885 LOC106589306 coding downstream 244809 16789813 ~ 16795054 (+)
G1668836 NA non-coding upstream 54562 16486105 ~ 16486380 (+)
G1668821 LOC106573797 non-coding upstream 87538 16452989 ~ 16453404 (+)
G1668458 NA non-coding upstream 197894 16342817 ~ 16343048 (+)
G1668457 NA non-coding upstream 198323 16342200 ~ 16342619 (+)
G1668456 NA non-coding upstream 199101 16341613 ~ 16341841 (+)
G1668860 NA non-coding downstream 2379 16547383 ~ 16548670 (+)
G1668867 NA non-coding downstream 69732 16614736 ~ 16614969 (+)
G1668923 NA non-coding downstream 70796 16615800 ~ 16616015 (+)
G1668926 yo84 non-coding downstream 73408 16618412 ~ 16618683 (+)
G1668930 NA non-coding downstream 93533 16638537 ~ 16638927 (+)
G1667601 NA other upstream 1199758 15339612 ~ 15341184 (+)
G1666308 NA other upstream 1755022 14785592 ~ 14785920 (+)
LOC118941995 LOC105021261 other downstream 908483 17453487 ~ 17457043 (+)
G1670091 NA other downstream 1027827 17572831 ~ 17577262 (+)
G1670125 LOC105007702 other downstream 1172032 17717036 ~ 17812707 (+)
G1670129 NA other downstream 1207290 17752294 ~ 17760812 (+)

Expression


Co-expression Network