LOC110499062 (arf1l)


Basic Information

Item Value
gene id LOC110499062
gene name arf1l
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 16605051 ~ 16611216 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021575938.2
GGGTGATATGATTGGATAAGATTAATAGTAGGAATTGCCCACACACCGGTGTCTCATGAGTTGCGCAAAACGCCATTTTGGAGTGACTGAAAGAGACGAAAGATCGAGAAGCCGTGTTCTAAGTTACCATGGGGAATATGTTTGGAAGCCTGTTCAAGGGCCTATTTGGCAAGAAGGAGATGAGGATTCTCATGGTTGGACTCGATGCTGCCGGAAAAACAACCATCCTGTACAAACTCAAACTAGGAGAGATTGTCACCACCATTCCTACAATTGGTTTTAATGTTGAAACGGTAGAATACAAGAACATCAGCTTCACAGTGTGGGACGTTGGCGGTCAAGACAAAATCAGGCCGTTATGGCGCCACTACTTCCAGAACACTCAAGGGCTTATCTTTGTGGTGGACAGCAACGACAGGGAGCGAGTGAACGAGGCGAGGGAGGAGTTGCAGAGAATGCTTGCAGAGGATGAGCTGAGAGATGCCGTGCTGCTCGTTTTTGCAAACAAACAGGACCTTCCCAATGCAATGAATGCTGCGGAGATCACAGACAAGCTGGGGCTCCACGCTCTCCGCCAGCGCAGCTGGTACATCCAAGCCACCTGTGCTACTAGTGGGGACGGCCTCTACGAGGGCCTCGACTGGCTCTCCAACCAGCTCAAGAACCAGAAATGATCCATTCCACCATTGTTTTCCCCTTCTTTCTGTCTGACAAGATGGCAGCACCGGTTCCAAGCCCCTGGCCCCTCGGAACTCCTCCCTCCACAGTCTTTCTCCAAAAACCTCATCCTCCATCTCTTTTTCTGTATCAATCCTTACTCCTGGGGCTCTAGCCTgtgctgcttgtgtgtgtgtgtgtactgtgtgtttgCAGTCGAGGGTGTGAAGGCGTCTCTGTGTCTGTTAGCTGGGATTGGGAGTAACCCTGTCGTGCCTTTAACACACCTCCGGTGGAAATGGTGGTCTGGCTCCTCAAGCGCCACCCCACCACATCCCGCCCAAGCCAACTCTGTCTTGCACGaccccctctcccccatgccAAGCATGGTTTTTACAAGGCAAAGAAAGAGCAAGAGTGCAAAcggttctcctctccctccttggtAGATATTTAACTTTATTTGTCCCACCAGTGTTGTGACTGAATAATAGGCCTTGCATTTTAACGTGTTTTGTTTTGAAACCTTACCTAGCCCCCACCTGTGATAAAAAAACATTGTGACCTGTATCAGGTTGAAACAAATCAAAAAGTTCTCCTTCCACTCTTGGTCGTTCTTTGCATCATTTGAAAACCATGCTTTTctttttatattattatattaccaACATCTCTTAGCAATGGTTCTCTAGCGAACACTACCTTTTTcccagcaagagagggagagaccatgAAGCACAAACCAACAACCATAGGGAAATATTCTCCCTCTAAGGTTAAAATTCGTTCTGAATTTAAAAACGGTAAATGTTACATGACTTCCTTTTGGTCATTTTTGAATTGTGAAAACTTGACACATTTTGACAATGTATTGACTGAATTTAAAGCAAATCTGTTCCTGCATTTTCAATTTGTCACCTATTTATTCAACTGAGCATTTCAATACATGGTTGTTTTCATAGGCTGCATTGGGCTGGTCGACTGTTGACATTCAGAAGCTTCAAACTTTATTCCTTGAAATGTTCCATGTCCGTTGTCTCTAGTTCTAGCATTTCTGTTTGTTCAACTGCTGAACCAAATGCAATTGAGCAGTATGACAAATCTTGTATATTAAACGTAGTGTACCCTCAAGGGTGTAAACGCTCTACATTTTGTGTTCTACCTGGAAATGTTCAAGAGATTATTATTCTTGTCTCAGAGGTTGGCTGTACCCAGCTTCTCGCTAATTTTGTCGATGTGATGAAGGAAAAGCACCAAATATGCTAGGGCTAGGCTAATGAAGAAAATAAGCCTAGCTCAAGGGTCTGAGTGCTAACATTGGCTACATTTAGCAACTTTGTGCTTCATACTTGAGTTACTAAGACCAACAGGTACCAGTACCTTCATTCCAAGAGCTGTAAGAATGACTACAGAGGGCATGGGCCGGGGGGAAAACCGCCCTCTTAAATTGTGTGACTGGAGGTTATGCTGGCACTTCTGTTAAGAATGATTGTAAATCTGTAAGTTTTCCCCTACAACTGTTTCTGTGGGGTTTTCCTGAACACATTAAATGATATGATTTGATCTGAA
>XM_021575940.2
tagctagctacatagGCTATTGCTAAGTTAACTAACATTGCCTCGTCCTTCAGGCCATTTGCTGACCATAGTTTTGGCATACGATTAGTACCAAATATGTGTAAAACGACACGTTCGGTAAACGTATGAAATACCTGAGATCCTCAGTTTGTTGTGTTATGGTTGTCTGTTAACTAGCACCCGCCcatgctggctagctagctaagcttCTTCGTTTAGCTTTATCTAGCTAGGATAACAATGTCGGCCGTCCAGTTCACTGTCTACCAGTTACCATGGGGAATATGTTTGGAAGCCTGTTCAAGGGCCTATTTGGCAAGAAGGAGATGAGGATTCTCATGGTTGGACTCGATGCTGCCGGAAAAACAACCATCCTGTACAAACTCAAACTAGGAGAGATTGTCACCACCATTCCTACAATTGGTTTTAATGTTGAAACGGTAGAATACAAGAACATCAGCTTCACAGTGTGGGACGTTGGCGGTCAAGACAAAATCAGGCCGTTATGGCGCCACTACTTCCAGAACACTCAAGGGCTTATCTTTGTGGTGGACAGCAACGACAGGGAGCGAGTGAACGAGGCGAGGGAGGAGTTGCAGAGAATGCTTGCAGAGGATGAGCTGAGAGATGCCGTGCTGCTCGTTTTTGCAAACAAACAGGACCTTCCCAATGCAATGAATGCTGCGGAGATCACAGACAAGCTGGGGCTCCACGCTCTCCGCCAGCGCAGCTGGTACATCCAAGCCACCTGTGCTACTAGTGGGGACGGCCTCTACGAGGGCCTCGACTGGCTCTCCAACCAGCTCAAGAACCAGAAATGATCCATTCCACCATTGTTTTCCCCTTCTTTCTGTCTGACAAGATGGCAGCACCGGTTCCAAGCCCCTGGCCCCTCGGAACTCCTCCCTCCACAGTCTTTCTCCAAAAACCTCATCCTCCATCTCTTTTTCTGTATCAATCCTTACTCCTGGGGCTCTAGCCTgtgctgcttgtgtgtgtgtgtgtactgtgtgtttgCAGTCGAGGGTGTGAAGGCGTCTCTGTGTCTGTTAGCTGGGATTGGGAGTAACCCTGTCGTGCCTTTAACACACCTCCGGTGGAAATGGTGGTCTGGCTCCTCAAGCGCCACCCCACCACATCCCGCCCAAGCCAACTCTGTCTTGCACGaccccctctcccccatgccAAGCATGGTTTTTACAAGGCAAAGAAAGAGCAAGAGTGCAAAcggttctcctctccctccttggtAGATATTTAACTTTATTTGTCCCACCAGTGTTGTGACTGAATAATAGGCCTTGCATTTTAACGTGTTTTGTTTTGAAACCTTACCTAGCCCCCACCTGTGATAAAAAAACATTGTGACCTGTATCAGGTTGAAACAAATCAAAAAGTTCTCCTTCCACTCTTGGTCGTTCTTTGCATCATTTGAAAACCATGCTTTTctttttatattattatattaccaACATCTCTTAGCAATGGTTCTCTAGCGAACACTACCTTTTTcccagcaagagagggagagaccatgAAGCACAAACCAACAACCATAGGGAAATATTCTCCCTCTAAGGTTAAAATTCGTTCTGAATTTAAAAACGGTAAATGTTACATGACTTCCTTTTGGTCATTTTTGAATTGTGAAAACTTGACACATTTTGACAATGTATTGACTGAATTTAAAGCAAATCTGTTCCTGCATTTTCAATTTGTCACCTATTTATTCAACTGAGCATTTCAATACATGGTTGTTTTCATAGGCTGCATTGGGCTGGTCGACTGTTGACATTCAGAAGCTTCAAACTTTATTCCTTGAAATGTTCCATGTCCGTTGTCTCTAGTTCTAGCATTTCTGTTTGTTCAACTGCTGAACCAAATGCAATTGAGCAGTATGACAAATCTTGTATATTAAACGTAGTGTACCCTCAAGGGTGTAAACGCTCTACATTTTGTGTTCTACCTGGAAATGTTCAAGAGATTATTATTCTTGTCTCAGAGGTTGGCTGTACCCAGCTTCTCGCTAATTTTGTCGATGTGATGAAGGAAAAGCACCAAATATGCTAGGGCTAGGCTAATGAAGAAAATAAGCCTAGCTCAAGGGTCTGAGTGCTAACATTGGCTACATTTAGCAACTTTGTGCTTCATACTTGAGTTACTAAGACCAACAGGTACCAGTACCTTCATTCCAAGAGCTGTAAGAATGACTACAGAGGGCATGGGCCGGGGGGAAAACCGCCCTCTTAAATTGTGTGACTGGAGGTTATGCTGGCACTTCTGTTAAGAATGATTGTAAATCTGTAAGTTTTCCCCTACAACTGTTTCTGTGGGGTTTTCCTGAACACATTAAATGATATGATTTGATCTGAA

Function

NR:

description
ADP-ribosylation factor 1 like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07937 ARF1_2; ADP-ribosylation factor 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021575938.2 False 2226 mRNA 0.45 5 16605051 16611216
XM_021575940.2 True 2373 mRNA 0.45 5 16605323 16611216

Neighbor

gene id symbol gene type direction distance location
LOC110499061 grn coding upstream 12404 16560848 ~ 16592647 (+)
LOC110499586 LOC106589323 coding upstream 60047 16540942 ~ 16545004 (+)
LOC110498755 LOC106589324 coding upstream 64614 16535724 ~ 16540437 (+)
LOC110499059 LOC106589326 coding upstream 156352 16349976 ~ 16448699 (+)
LOC110499058 LOC106589328 coding upstream 298423 16140837 ~ 16306628 (+)
grb7 LOC106589320 coding downstream 10555 16621771 ~ 16637170 (+)
LOC110498756 LOC106589319 coding downstream 46275 16657491 ~ 16706241 (+)
LOC100135885 LOC106589306 coding downstream 178597 16789813 ~ 16795054 (+)
LOC110499066 LOC106589302 coding downstream 201898 16813114 ~ 16822670 (+)
LOC110499069 LOC106589311 coding downstream 213270 16824486 ~ 16840335 (+)
G1668860 NA non-coding upstream 56381 16547383 ~ 16548670 (+)
G1668836 NA non-coding upstream 118671 16486105 ~ 16486380 (+)
G1668821 LOC106573797 non-coding upstream 151647 16452989 ~ 16453404 (+)
G1668458 NA non-coding upstream 262003 16342817 ~ 16343048 (+)
G1668457 NA non-coding upstream 262432 16342200 ~ 16342619 (+)
G1668867 NA non-coding downstream 3520 16614736 ~ 16614969 (+)
G1668923 NA non-coding downstream 4584 16615800 ~ 16616015 (+)
G1668926 yo84 non-coding downstream 7196 16618412 ~ 16618683 (+)
G1668930 NA non-coding downstream 27321 16638537 ~ 16638927 (+)
G1668935 NA non-coding downstream 37008 16648224 ~ 16648455 (+)
LOC110499057 LOC106589330 other upstream 469284 16134445 ~ 16135964 (+)
G1667601 NA other upstream 1263867 15339612 ~ 15341184 (+)
G1666308 NA other upstream 1819131 14785592 ~ 14785920 (+)
LOC118941995 LOC105021261 other downstream 842271 17453487 ~ 17457043 (+)
G1670091 NA other downstream 961615 17572831 ~ 17577262 (+)
G1670125 LOC105007702 other downstream 1105820 17717036 ~ 17812707 (+)
G1670129 NA other downstream 1141078 17752294 ~ 17760812 (+)

Expression


Co-expression Network