LOC110499071 (arl4d)


Basic Information

Item Value
gene id LOC110499071
gene name arl4d
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 16847450 ~ 16849896 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021575947.2
ATTCCACACTGCTGCTCATTGCTCCATCGGTGcacggagcagacagacagatattagCACGCAGAGAAGCAATATTTGGATGTATGGATATATGGATGTATTTGCTGCGCTAGGATGATGCCATTTATGTTCATTCAAGTGGTCTAGAAGGTCCCCAGTCCTGCAACCGTCCAGTCCTCCTTTGAAGAGGGTGCCAATGCACACCTATTAGAAAGGATTACTGAGCATCTGCCACCTCACCCAAGGAGGTGAGAACATCCCATCACCATGGGGAACCAGCTGACCGAGATAGCCCCCAACACCCCGTTCCTGCAAAACTTCCAGTCCTTGCACGTGGTAGTGATTGGCCTGGACGCGGCTGGCAAAACCTCTCTGCTCTACAGATTGAAGCTCAAGGAGTTTGTCAAGACCATCCCGACCAAGGGCTTTAACACGGAGAAGATCAAGGTAGCGGTGGGCAGTTCGCGGGCCATCACTTTCCAGGTGTGGGATGTAGGGGGCCAGGAGAAGCTGCGGCCCCTGTGGAAGTCGTACACGAGGCGGACCGATGGCATGGTGTTCGTGGTGGACTCCACCGAAATCGAACGTATGGAGGAGGCCAAGGTGGAGCTTCACAAGATCACCCGTACCTCGGAGAACCAGGGGGTGCCCGTCCTGGTGCTGGCCAACAAGCAGGACCTGGCCTCAGCTCTGTCTGTGAGCGAGGTGGAGAAGGTCCTGGCCGTCCATGAACTGAATGCCTCCACCTTGCACCACGTACAGAGCTGCAGCGCCGTGGATGGACAAGGCCTACAACCAGGCCTAGAGAAACTCTACGAGATGATCCTGAAGAGGAAGAAGATggtgaaacacaacaaacatagAAAGAGATGAGCCTGGGATTGTCCTGATTTAAAGGGCCATTTGTGACTCTTTGAGCGGCGGTCCTGTCCCTTTAAATAAAAGGGAAGGTTTTTTGCCAACAAAGGACCAATTCCAGATGGCACAGGGGTCAGGAGAAATGGATTTGGCCTTTATGTGACATGCAGTATTGATACACCGTCTTTTATACCTTGTATTAGCCACACAGCTGCCCTTTGTATGCAATGAATATGTGATAGCCACGAGAGGCTGTAGCTGCCTATGACATATTTTGTCCCACAAAGTTGGACTCACTTGTTTTACCCTACAACACAGTAGAAATGTGATACCAAACTTTGAACTCTGAACTCCTGTTGGATATGAACAGAGACACACATTTGATATGATATGAAGCTAAATCGTATTGATATCAAATGGAATACCATGGCGATTACAGTAttattttggtcacttttgaaagAACAATTCCAAGTGCATTCCCCTTATGCCACAGAGTTTCAGCTGGATTCGCAGACTGTTTTTACAAGTTGTACAATTTTTGTAACACTGAAGAATGAATAAATCAACCCACT

Function

symbol description
arl4d Predicted to enable GTP binding activity. Predicted to be involved in intracellular protein transport and vesicle-mediated transport. Predicted to be active in cytoplasm and plasma membrane. Orthologous to human ARL4D (ADP ribosylation factor like GTPase 4D).

NR:

description
ADP-ribosylation factor-like protein 4D

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07945 ARL4; ADP-ribosylation factor-like protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021575947.2 True 1433 mRNA 0.49 2 16847450 16849896

Neighbor

gene id symbol gene type direction distance location
LOC110499069 LOC106589311 coding upstream 7115 16824486 ~ 16840335 (+)
LOC110499066 LOC106589302 coding upstream 24780 16813114 ~ 16822670 (+)
LOC100135885 LOC106589306 coding upstream 52396 16789813 ~ 16795054 (+)
LOC110498756 LOC106589319 coding upstream 141209 16657491 ~ 16706241 (+)
grb7 LOC106589320 coding upstream 210280 16621771 ~ 16637170 (+)
LOC110499072 sost coding downstream 27555 16877451 ~ 16920896 (+)
LOC118942005 LOC106589179 coding downstream 151818 17001714 ~ 17006377 (+)
LOC110499073 LOC106578252 coding downstream 202266 17052162 ~ 17176942 (+)
telo2 telo2 coding downstream 337827 17187723 ~ 17204657 (+)
LOC118942040 ift140 coding downstream 355390 17205286 ~ 17219864 (+)
G1669029 NA non-coding upstream 2859 16844253 ~ 16844591 (+)
G1669022 NA non-coding upstream 45698 16801553 ~ 16801752 (+)
G1669019 NA non-coding upstream 50230 16796155 ~ 16797220 (+)
G1668937 NA non-coding upstream 193354 16653791 ~ 16654096 (+)
G1669054 LOC100194703 non-coding downstream 30376 16880272 ~ 16880602 (+)
G1669056 NA non-coding downstream 32032 16881928 ~ 16882141 (+)
G1669061 NA non-coding downstream 34990 16884886 ~ 16885119 (+)
G1669063 NA non-coding downstream 38492 16888388 ~ 16888694 (+)
LOC110498755 LOC106589324 other upstream 307013 16535724 ~ 16540437 (+)
LOC110499058 LOC106589328 other upstream 541229 16140837 ~ 16306628 (+)
LOC110499057 LOC106589330 other upstream 711683 16134445 ~ 16135964 (+)
G1667601 NA other upstream 1506266 15339612 ~ 15341184 (+)
LOC118941995 LOC105021261 other downstream 603591 17453487 ~ 17457043 (+)
G1670091 NA other downstream 722935 17572831 ~ 17577262 (+)
G1670125 LOC105007702 other downstream 867140 17717036 ~ 17812707 (+)
G1670129 NA other downstream 902398 17752294 ~ 17760812 (+)
G1670126 NA other downstream 917585 17767481 ~ 17773702 (+)

Expression


Co-expression Network