LOC110498760 (stub1)


Basic Information

Item Value
gene id LOC110498760
gene name stub1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 17442590 ~ 17452727 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110498760
aatctggccaaggagcagagactgaactttggagacgacatcccgagtgccctgcgggtcgctaagaagatgcgctggaatagcattgaggagaagcgcatcaaccaggagaacaagctgcatgcatatctcaccaaacttatcctagcagagaaggagagAAGCGGGAGATCCCTGACTACCTGTGTGGAAAGATAAGCTTTGAGTTGATGAGGGAGCCCTGCATCACCCCCAGTGGGATCACCTACGACCGCAAAGACATTGAGGAGCACCTACAGAGAGGGGGCCATTTTGACCCAGTCACCCGGAGTCCTCTGACCCAGGACCAGCTGATCCCCAACCTGGCCATGAAGGAGGTCATCGACGCCTTTATCCAGGAGAACGGTTGGGTGGAGGACTATTGAACTTCCATAACCCCCCATGTCTCAGAGACCCACACAGCCCAGAGCTGAGACCCACACCAGAAGTGTAAAAAAAGACGAGACAGAATTGACTTCCTCCAGGACATGCACTTTACACACATGGGGGTCATACTATGGACTACCAAATGACAGCCATATCTCAAGGtggttcctctctctttctcaatcagTCTTCTCTATCTCCTCTAAATATTTCTCTCTTCACTTCCTCTGatagtcctctctctccctcagaatCGGAGGCCATGTttctcaggtctctctttctccctgactgtctctTCCCTTCTAATCTCTCAGTGCCACAATCCTCTCTGAACACATCACTCTGCACCCAGGTGTCTCAGAACCCTCTAATGTAAAGCTTACAATATTTTCTCAAATAAACATCGGAACCATCTATCTATCCAAA
>TU1910728
gcttacaatctggccaaggagcagagactgaactttggagacgacatcccgagtgccctgcgggtcgctaagaagatgcgctggaatagcattgaggagaagcgcatcaaccaggagaacaagctgcatgcatatctcaccaaacttatcctagcagagaaggagagAAGCGGGAGATCCCTGACTACCTGTGTGGAAAGATAAGCTTTGAGTTGATGAGGGAGCCCTGCATCACCCCCAGTGGGATCACCTACGACCGCAAAGACATTGAGGAGCACCTACAGAGAGGGGGCCATTTTGACCCAGTCACCCGGAGTCCTCTGACCCAGGACCAGCTGATCCCCAACCTGGCCATGAAGGAGGTCATCGACGCCTTTATCCAGGAGAACGGTTGGGTGGAGGACTATTGAACTTCCATAACCCCCCATGTCTCAGAGACCCACACAGCCCAGAGCTGAGACCCACACCAGAAGTGTAAAAAAAGACGAGACAGAATTGACTTCCTCCAGGACATGCACTTTACACACATGGGGGTCATACTATGGACTACCAAATGACAGCCATATCTCAAGGtggttcctctctctttctcaatcagTCTTCTCTATCTCCTCTAAATATTTCTCTCTTCACTTCCTCTGatagtcctctctctccctcagaatCGGAGGCCATGTttctcaggtctctctttctccctgactgtctctTCCCTTCTAATCTCTCAGTGCCACAATCCTCTCTGAACACATCACTCTGCACCCAGGTGTCTCAGAACCCTCTAATGTAAAGCTTACAATATTTTCTCAAATAAACATCGGAACCATCTATCTATCCAAAGTATGAAAATATTGGCCTTTTATCTTGCTCTTACTCCAGTGTTCTAAGATTTTTGAAAAAATTCTGGGTTACTAGTATAGATAGTTGTCCCTAATGTAAGTACTTATTTCCCACAATTCAGTGTTGATGGTCCTGGTCAATGCCAAAACATTGTTATAGTTTTCAAACAATCTAGTGTCTATTTTTTAATGCAAAACA

Function

symbol description
stub1 Predicted to enable several functions, including TPR domain binding activity; chaperone binding activity; and heat shock protein binding activity. Predicted to be involved in several processes, including cellular response to misfolded protein; positive regulation of cellular protein metabolic process; and proteolysis involved in cellular protein catabolic process. Predicted to act upstream of or within protein ubiquitination. Predicted to be active in Z disc. Human ortholog(s) of this gene implicated in autosomal recessive spinocerebellar ataxia 16 and cerebellar ataxia type 48. Orthologous to human STUB1 (STIP1 homology and U-box containing protein 1).

NR:

description
STIP1 homology and U box-containing protein 1-like

GO:

id name namespace
GO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process biological_process
GO:0031398 positive regulation of protein ubiquitination biological_process
GO:0030579 ubiquitin-dependent SMAD protein catabolic process biological_process
GO:0000209 protein polyubiquitination biological_process
GO:0031943 regulation of glucocorticoid metabolic process biological_process
GO:0000151 ubiquitin ligase complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0046332 SMAD binding molecular_function
GO:0030544 Hsp70 protein binding molecular_function
GO:0051879 Hsp90 protein binding molecular_function
GO:0030911 TPR domain binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110498760 False 834 mRNA 0.50 3 17442788 17452721
TU1910728 True 1038 TUCP 0.46 3 17442590 17452727

Neighbor

gene id symbol gene type direction distance location
LOC110498759 NA coding downstream 11732 17428615 ~ 17434040 (-)
LOC110499078 LOC106578245 coding downstream 68473 17367169 ~ 17374315 (-)
LOC118942007 LOC106578245 coding downstream 80190 17359654 ~ 17362598 (-)
LOC118942041 LOC106611593 coding downstream 92328 17346166 ~ 17350460 (-)
LOC110499076 LOC106578246 coding downstream 157518 17274450 ~ 17285270 (-)
LOC110512504 NA coding upstream 921054 18373775 ~ 18381647 (-)
LOC118942047 NA coding upstream 931144 18383865 ~ 18384458 (-)
LOC110498770 LOC106589258 coding upstream 1301373 18754094 ~ 18887492 (-)
LOC110499157 LOC106589261 coding upstream 1437349 18890070 ~ 19003867 (-)
LOC110499154 LOC106589262 coding upstream 1601405 19054126 ~ 19095333 (-)
G1669999 NA non-coding downstream 124784 17317705 ~ 17318004 (-)
G1669997 NA non-coding downstream 128300 17314273 ~ 17314488 (-)
G1669994 NA non-coding downstream 132144 17309976 ~ 17310644 (-)
G1669964 NA non-coding downstream 186770 17255803 ~ 17256018 (-)
LOC110499077 tmem204 non-coding downstream 188297 17239865 ~ 17254491 (-)
G1670039 NA non-coding upstream 316 17453037 ~ 17453253 (-)
G1670083 NA non-coding upstream 50930 17503651 ~ 17504005 (-)
G1670089 NA non-coding upstream 118696 17571417 ~ 17571756 (-)
G1670090 NA non-coding upstream 119207 17571928 ~ 17572320 (-)
G1670104 NA non-coding upstream 135520 17588241 ~ 17607901 (-)
G1669974 NA other downstream 172640 17269783 ~ 17270148 (-)
G1669343 LOC106589306 other downstream 647533 16754026 ~ 16795255 (-)
LOC110499060 LOC106589322 other downstream 893656 16547347 ~ 16560741 (-)
G1668767 NA other downstream 1105054 16337276 ~ 16337734 (-)
G1670109 LOC105007702 other upstream 143894 17596615 ~ 17625448 (-)
G1670145 NA other upstream 233255 17685976 ~ 17691866 (-)
G1670142 NA other upstream 235014 17687735 ~ 17694584 (-)
G1671478 NA other upstream 569723 18022444 ~ 18032842 (-)
G1671549 NA other upstream 947631 18400352 ~ 18406596 (-)

Expression


Co-expression Network