LOC118942008 (LOC105021261)


Basic Information

Item Value
gene id LOC118942008
gene name LOC105021261
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 17461437 ~ 17464981 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC118942008
atggctagcagcccagagaagagttccacagcacaggagctgaaggagcagggcaaccgactgttcctctgccgcaagtaccaggaagctgccacctgctacagcaaaaccataaaccgtaacccctcagtggcggtgtactacaccaaccgtactctgtgccaagtgaagctgcaagcagaacgacaaagccctggcggactgcaagcacgcgctggaactggacccccattctgtcaaagcccacttcttcctgtgccagtgtcacctggagctggagaactacaacgaggccatcggcaacctgcagagagcttacaatctggccaaggagcagagactgaactttggagacgacatcccgagtgccctgcgggtcgctaagaagaagcgctggaatagcattgaggagaagcgcatcaaccaggagaacaagctgcatgcatatctcaccaaacttatcctagcagagaaggagaggtga

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase CHIP

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0000151 ubiquitin ligase complex cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC118942008 True 484 mRNA 0.55 3 17461437 17464981

Neighbor

gene id symbol gene type direction distance location
LOC118941995 LOC105021261 coding upstream 4394 17453487 ~ 17457043 (+)
LOC118942006 NA coding upstream 143343 17317362 ~ 17318094 (+)
LOC118942040 ift140 coding upstream 241573 17205286 ~ 17219864 (+)
telo2 telo2 coding upstream 256780 17187723 ~ 17204657 (+)
LOC110499073 LOC106578252 coding upstream 284495 17052162 ~ 17176942 (+)
LOC110515779 LOC105021261 coding downstream 4388 17469369 ~ 17472887 (+)
LOC118941996 LOC105021261 coding downstream 11432 17476413 ~ 17479931 (+)
LOC118942042 LOC105021261 coding downstream 19343 17484324 ~ 17495741 (+)
LOC118942043 NA coding downstream 115609 17580590 ~ 17587187 (+)
LOC118942044 NA coding downstream 135148 17600129 ~ 17605166 (+)
G1669683 NA non-coding upstream 74517 17328520 ~ 17386920 (+)
G1669755 NA non-coding upstream 93750 17359796 ~ 17367687 (+)
G1669726 NA non-coding upstream 152538 17308681 ~ 17308899 (+)
G1669723 NA non-coding upstream 158631 17302478 ~ 17302806 (+)
G1670085 NA non-coding downstream 77232 17542213 ~ 17542468 (+)
G1670086 NA non-coding downstream 92074 17557055 ~ 17561682 (+)
G1670088 NA non-coding downstream 106401 17571382 ~ 17571653 (+)
G1670094 NA non-coding downstream 115672 17580653 ~ 17605720 (+)
LOC118942045 NA non-coding downstream 142300 17607281 ~ 17615450 (+)
LOC110498756 LOC106589319 other upstream 775342 16657491 ~ 16706241 (+)
LOC110498755 LOC106589324 other upstream 921000 16535724 ~ 16540437 (+)
LOC110499058 LOC106589328 other upstream 1155216 16140837 ~ 16306628 (+)
LOC110499057 LOC106589330 other upstream 1325670 16134445 ~ 16135964 (+)
G1670091 NA other downstream 107850 17572831 ~ 17577262 (+)
G1670125 LOC105007702 other downstream 252055 17717036 ~ 17812707 (+)
G1670129 NA other downstream 287313 17752294 ~ 17760812 (+)
G1670126 NA other downstream 302500 17767481 ~ 17773702 (+)
G1670209 LOC105007702 other downstream 586630 18051611 ~ 18132470 (+)

Expression


Co-expression Network