LOC110515779 (LOC105021261)


Basic Information

Item Value
gene id LOC110515779
gene name LOC105021261
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 17469369 ~ 17472887 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110515779
atggctagcagcccagagaagagttccacagcacaggagctgaaggagcagggcaaccgactgttcctctgccgcaagtaccaggaagctgccacctgctacagcaaaaccataaaccgtaacccctcagtggcggtgtactacaccaaccgtactctgtgccaagtgaagctgcaagcagaacaacaaagccctggcggactgcaagcacgcgctggaactggacccccattctgtcaaagcccacttcttcctgtgccagtgtcacctggagctggagaactacaacgaggccatcggcaacctgcagagagcttacaatctggccaaggagcagagactgaactttggagacgacatcccgagtgccctgcgggtcgctaagaagaagcgctggaatagcattgaggagaagcgcatcaaccaggagaacaagctgcatgcacaccaaacttatcctagcagagaaggagaggtga

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase CHIP

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0000151 ubiquitin ligase complex cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110515779 True 479 mRNA 0.55 3 17469369 17472887

Neighbor

gene id symbol gene type direction distance location
LOC118942008 LOC105021261 coding upstream 4388 17461437 ~ 17464981 (+)
LOC118941995 LOC105021261 coding upstream 12326 17453487 ~ 17457043 (+)
LOC118942006 NA coding upstream 151275 17317362 ~ 17318094 (+)
LOC118942040 ift140 coding upstream 249505 17205286 ~ 17219864 (+)
telo2 telo2 coding upstream 264712 17187723 ~ 17204657 (+)
LOC118941996 LOC105021261 coding downstream 3526 17476413 ~ 17479931 (+)
LOC118942042 LOC105021261 coding downstream 11437 17484324 ~ 17495741 (+)
LOC118942043 NA coding downstream 107703 17580590 ~ 17587187 (+)
LOC118942044 NA coding downstream 127242 17600129 ~ 17605166 (+)
LOC118942045 NA coding downstream 137526 17607281 ~ 17615450 (+)
G1669683 NA non-coding upstream 82449 17328520 ~ 17386920 (+)
G1669755 NA non-coding upstream 101682 17359796 ~ 17367687 (+)
G1669726 NA non-coding upstream 160470 17308681 ~ 17308899 (+)
G1669723 NA non-coding upstream 166563 17302478 ~ 17302806 (+)
G1670085 NA non-coding downstream 69326 17542213 ~ 17542468 (+)
G1670086 NA non-coding downstream 84168 17557055 ~ 17561682 (+)
G1670088 NA non-coding downstream 98495 17571382 ~ 17571653 (+)
G1670094 NA non-coding downstream 107766 17580653 ~ 17605720 (+)
LOC110498756 LOC106589319 other upstream 783274 16657491 ~ 16706241 (+)
LOC110498755 LOC106589324 other upstream 928932 16535724 ~ 16540437 (+)
LOC110499058 LOC106589328 other upstream 1163148 16140837 ~ 16306628 (+)
LOC110499057 LOC106589330 other upstream 1333602 16134445 ~ 16135964 (+)
G1670091 NA other downstream 99944 17572831 ~ 17577262 (+)
G1670125 LOC105007702 other downstream 244149 17717036 ~ 17812707 (+)
G1670129 NA other downstream 279407 17752294 ~ 17760812 (+)
G1670126 NA other downstream 294594 17767481 ~ 17773702 (+)
G1670209 LOC105007702 other downstream 578724 18051611 ~ 18132470 (+)

Expression


Co-expression Network