LOC118942042 (LOC105021261)


Basic Information

Item Value
gene id LOC118942042
gene name LOC105021261
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 17484324 ~ 17495741 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC118942042
atggctagcagcccagagaagagttccacagcacaggagctgaaggagcagggcaaccgactgttcctctgccgcaagtaccaggaagctgccacctgctacagcaaaaccataaaccgtaacccctcagtggcggtgtactacaccaaccgtactctgtgccaagtgaagctgcaagcagaacgacaaagccctggcggactgcaagcacgcgctggaactggacccccattctgtcaaagcccacttcttcctgtgccagtgtcacctggagctggagaactacaacgaggccatcggcaacctgcagagagcttacaatctggccaaggagcagagactgaactttggagacgacatcccgagtgccctgcgggtcgctaagaagaagcgctggaatagcattgaggagaagcgcatcaaccaggagaacaagctgcatgcatatctcaccaaacttatcctagcagagaaggagaggtga

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase CHIP

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0000151 ubiquitin ligase complex cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC118942042 True 484 mRNA 0.55 3 17484324 17495741

Neighbor

gene id symbol gene type direction distance location
LOC118941996 LOC105021261 coding upstream 4393 17476413 ~ 17479931 (+)
LOC110515779 LOC105021261 coding upstream 11437 17469369 ~ 17472887 (+)
LOC118942008 LOC105021261 coding upstream 19343 17461437 ~ 17464981 (+)
LOC118941995 LOC105021261 coding upstream 27281 17453487 ~ 17457043 (+)
LOC118942006 NA coding upstream 166230 17317362 ~ 17318094 (+)
LOC118942043 NA coding downstream 84849 17580590 ~ 17587187 (+)
LOC118942044 NA coding downstream 104388 17600129 ~ 17605166 (+)
LOC118942045 NA coding downstream 114672 17607281 ~ 17615450 (+)
LOC118942046 NA coding downstream 342352 17838093 ~ 17843090 (+)
LOC110499153 LOC106589263 coding downstream 1599141 19094882 ~ 19201695 (+)
G1669683 NA non-coding upstream 97404 17328520 ~ 17386920 (+)
G1669755 NA non-coding upstream 116637 17359796 ~ 17367687 (+)
G1669726 NA non-coding upstream 175425 17308681 ~ 17308899 (+)
G1669723 NA non-coding upstream 181518 17302478 ~ 17302806 (+)
G1670085 NA non-coding downstream 46472 17542213 ~ 17542468 (+)
G1670086 NA non-coding downstream 61314 17557055 ~ 17561682 (+)
G1670088 NA non-coding downstream 75641 17571382 ~ 17571653 (+)
G1670094 NA non-coding downstream 84912 17580653 ~ 17605720 (+)
LOC110498756 LOC106589319 other upstream 798229 16657491 ~ 16706241 (+)
LOC110498755 LOC106589324 other upstream 943887 16535724 ~ 16540437 (+)
LOC110499058 LOC106589328 other upstream 1178103 16140837 ~ 16306628 (+)
LOC110499057 LOC106589330 other upstream 1348557 16134445 ~ 16135964 (+)
G1670091 NA other downstream 77090 17572831 ~ 17577262 (+)
G1670125 LOC105007702 other downstream 221295 17717036 ~ 17812707 (+)
G1670129 NA other downstream 256553 17752294 ~ 17760812 (+)
G1670126 NA other downstream 271740 17767481 ~ 17773702 (+)
G1670209 LOC105007702 other downstream 555870 18051611 ~ 18132470 (+)

Expression


Co-expression Network