LOC118942043


Basic Information

Item Value
gene id LOC118942043
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 17580590 ~ 17587187 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037941.1
gagaacaagctgcatgcatatctcaccaaacttatcctagcagagaaggagagCACACCTTCTACAGatgccatcaaggcaaaatgggaggaagaactagggACTGACATTTCTGTGGCAGACTGGGAAGAGAGCTTGGAGTATATCCACACATGCTCCATTAATTCCAGACATCGTCTCATACAATTCAAGGTATTACACAGATTACACTTTTCCAAAACTAAACTGCATAGGATATTTCCACATCCCTTACATGTGATAAATGTCAGGCTGCCTCTactccactgctccactgctTTGCCTTATGGTCTAGCTTCCATGGTTATTGGTGTGGAATTTTTGGGATCCTCTCTGAAGTTTTGGAGACTTCAATAGATAACCCGCTTCTGATAATCCTGGGAGTATCTGAGTCCCTAAACGGATTAAccaacccccaaaaacaactaaTCTCGTACGGGATAGGGAAagattgaatatgttcgtaaatGATCACCAGTCAGATGgtcgcggctagggatgccatctgggccggcagccttgcgagggttaacaagtttaaatcttttactcacattggccacggagaaggagaacccacaggctttggtagtgggccgtgtcagtggcactgtattgtcctcaaagcgagcaaagaagttttttaatttgtctgggagcaagacgttggtgtTCGCGACTGGGctcgttttctttttgtaataTGTGATTGACTGTAAGACCCTGCCAAATGCGTTTCGTGTTTGAGCTGTTGAAtggcaactctactttgtctctatactgacactttgcttgtttgagggAATAGCTGCATTGTTTGTATTTGTtaatgtttccagtcgccttgccatgattaaaagagGTGCTtctctttcagttttgcgcgaatgtgccatcaatccacggtttctgtttaggaaaggttttaatagtcacagttggGTACGATATctctgatgcacttgctaataaactcgctcaccgagtcaacgttattgtctgaggctatctggaacatatcccagtacACGTGATTGCTTCAATCTTGAAGTGTCGAATCCGATTAGTCAGATCAGCATTGGATAGACCTGAGCaggggcgtttcctgttttagtttgtctataggctgggaatctttaaaaaaatggagtcgtggtcagatttgccaaaggcagGGCTTTGCATGCATCGCAGAAGTTAATGtggcaatgatccagaatgctacGACCTCGTGTCActcattcgatatgctgatagaatatAGGGAGTCTTGTTCTCacgttagctttgttaaaatccccagttaCAATACATGCAGCCTCGATGTATGGTTTCTAGTTTACATAGAgaccagtgaagttctttcaggttGGAGGGATATATGCAACTGACTATtttcgaagagaattctcttggaagataatgcggtcagcatttgattgtaaggaattctaggtcaggtgaacaaaattaCTTAAGTTCCTATATGTTGtagtgattacaccatgagtcgttaatcataaggcatacacctccGCCCTTCACTATATCACAGTAATAAGGTGTAGTTAAATAAGTTCTAGTTAATCAAATCACTTTCTCTACTTCCCGTCCCAGGTCATTACCTGGACCAGAAGAGGCTAAAACAGGGCCTGTACCGCCACCCATGGGATGACATCTCCTATGTGCTTCCTGAACACATGTCAATGTAACTGATGACAGCGAGTCGGCACCTCTGGATGTCAACACTCGGATATGACGGGAAGCATTTTCACCTTATCACTTCAACAACCTCTGCCTTTGGGCAGGGTAAATCCAGAGGTGGGGGGGATATGGGGGAAGAGGGGAGCGTTAGTTTTATTAGGTCACTAAAGAAAAAGGGAATAATTTACGTTATTTAAGTTATGAGTTCAATCGTTAACAAAAAAAAGGAGCCGAACCAATGCAAGCTGCAGCTGTGGTCACACTAGGTGACTGGGAAAACTAGGTCACCGGTTCACAAATGGGATAGTGGCTTTTTGACCATGCCACCTGGTTGTTTGGTCCATCGCCTACTCGCttatattttattttcatatcTCTTACTAAACTCTCAAACGATTAACAGTTGGTTGAGCTGTATAATATAGGGCTAGCCCTGCTTTAGGCCTCTAGGGTGTGTGCTGTTGAAAGTTAGCATGCTTTCTGGGTGACTTGGTAATGCACATAACATGAACACTGGCTTGCCTATGGAGAAGTAGTCTTGGTCGGTAAACCTGCATCCCTCAATGGAGTGTAAGCCTTGAACGATCCACCGTCATGTACATTACAAAACCAAAGTATTGTGTGAGGTTTTATTTACACATTTAATCTAGTTTCCGACCTTAATCCCCTTCCAAAGTTGTGTAGCCTATTATGGTGTGTACTCTGTGGCTGTTCAAGATAAGGGGGCACGGTTTAACTAGCTGAATGTTAGTGTTGATTTGCcactgcctttttttttttttttaggatccCAATTATCTGTTGCAaaagcaacagctactcttcctgatgtCCTTTCTCATCCCCTCTGTCATTGGACGAAACGATCATGTTAACTTTATTTTCATCCATTTAGATTTCAAGAAAttacaaatgtgttattttaaaatgtttcaaAATAAAGGAAAAGGCAATAAACAGTCCTACTTTTGAAGGGGTTAATTGCTTTAAAATGTGAGTCTTAAATGCATCTTTTGCGAGGGACCATGAAGGCAGTGTATTTTATCTGGGAAAATAGTGTCTGATTTGCACGTTATGTCTAGATTATTGCTACCAGTAGCCATTTTTCTTTGTCCTCAATGTTCTGTGACAGGCATGTTTGTACTTCGTTTTATTTAAATGTGAATTAAAAATGCTTCTTAGTTTATTAAAACCAAGCATGTCTAACTTTTCA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037941.1 True 2935 mRNA 0.42 2 17580590 17587187

Neighbor

gene id symbol gene type direction distance location
LOC118942042 LOC105021261 coding upstream 84849 17484324 ~ 17495741 (+)
LOC118941996 LOC105021261 coding upstream 100659 17476413 ~ 17479931 (+)
LOC110515779 LOC105021261 coding upstream 107703 17469369 ~ 17472887 (+)
LOC118942008 LOC105021261 coding upstream 115609 17461437 ~ 17464981 (+)
LOC118941995 LOC105021261 coding upstream 123547 17453487 ~ 17457043 (+)
LOC118942044 NA coding downstream 12942 17600129 ~ 17605166 (+)
LOC118942045 NA coding downstream 23226 17607281 ~ 17615450 (+)
LOC118942046 NA coding downstream 250906 17838093 ~ 17843090 (+)
LOC110499153 LOC106589263 coding downstream 1507695 19094882 ~ 19201695 (+)
LOC110499151 LOC106589264 coding downstream 1620065 19207252 ~ 19242695 (+)
G1670088 NA non-coding upstream 8937 17571382 ~ 17571653 (+)
G1670086 NA non-coding upstream 18908 17557055 ~ 17561682 (+)
G1670085 NA non-coding upstream 38122 17542213 ~ 17542468 (+)
G1669683 NA non-coding upstream 193670 17328520 ~ 17386920 (+)
G1669755 NA non-coding upstream 212903 17359796 ~ 17367687 (+)
G1670114 NA non-coding downstream 98737 17685924 ~ 17691465 (+)
G1670116 NA non-coding downstream 100850 17688037 ~ 17693706 (+)
G1670123 NA non-coding downstream 127361 17714548 ~ 17714916 (+)
G1670125 LOC105007702 non-coding downstream 129849 17717036 ~ 17812707 (+)
G1670091 NA other upstream 3328 17572831 ~ 17577262 (+)
LOC110498756 LOC106589319 other upstream 894495 16657491 ~ 16706241 (+)
LOC110498755 LOC106589324 other upstream 1040153 16535724 ~ 16540437 (+)
LOC110499058 LOC106589328 other upstream 1274369 16140837 ~ 16306628 (+)
G1670129 NA other downstream 165107 17752294 ~ 17760812 (+)
G1670126 NA other downstream 180294 17767481 ~ 17773702 (+)
G1670209 LOC105007702 other downstream 464424 18051611 ~ 18132470 (+)

Expression


Co-expression Network