LOC110499150


Basic Information

Item Value
gene id LOC110499150
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 19304115 ~ 19305599 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002469923.2
CTGGAACGGAGCCTTTTGTGGAACGCTCCATAACACCTGAGCTTTGTTGTTTTGTGACTTTAATGAGGCCATTTGCATGGTTCGGACCAATGAGATGCGTTTTTTAAATTTTAGGATAGAGAGAAAAGATGATCAATATTTAATAAAAAGGAAGTTGTCTTCAGTGTTTAATCGTGCATAGGCTAATCCTTACTCATGTGACTGAGTTGACAGCCTAGTAGTAATACCGCATATATGGGCTTAATAACGATGTTTAACAACGATCAAGTTTGTTTCTGTTCCAAGTATGATCCCTTTCATTGAGTTGGATTCATGATAACAAGTAACCGTTAGGTCATACTTACTATTTCCTTTGTCACAGttcctcatgcacacacacaaagcgTTTCTGCTGTTACATCCTGTGAACTCTGCCCCTCTCATCTCTTTCCCCAGTTAGGAACGAGCCTATGAACAACAGTGAGACTGACAAACGCAGGCAGCAGCACTGGACAGCCATGCAGGCGaagACAGGGCCTTTAAACAACAGTGAGACGGACTACCACAGAAGGCAGCCATTGCCAGCAAAGGAATCATATTTTATGCAGTGCTGGTGAAATGGACAATCAGACATGTCAGCTGTTGTTTCATTGGATGTCGTGGAATTTGTCCATTCTTTTGAAATAATGTGGATTGTCCTGCATGTCCAGGCCTGCTCTGAAATTAAATAGGTATGATATCAGGCTCCTATTGCACAgcaatactgtagcctacccatactgTAAAATATTTGTTATATTTACAGGTCTATTTTACTTTCGAGCATGGTTGGCTATTGAATGAGTGATGTTAAGTACACATATTTTCCCAGGTTTTTAAGTCCGGCCCCCCCATTAAATCAAGTTAAGGAGGAAACCAATGtctttgcagcctgaatggaggaTGTTTTATGTACGAACCGGACGCGGGGGTTAGGAGTGTATTGCACAAGGCCAGACAATGTAAACCTTGGCGAACCGTTGGGTTTGGCGGAACCATTGGGGCTAGTAGACAGCTGTACAAAACACAAgttacacacacattttaaaacaC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002469923.2 True 1071 mRNA 0.42 3 19304115 19305599

Neighbor

gene id symbol gene type direction distance location
LOC110499147 LOC106589265 coding downstream 9166 19277271 ~ 19294949 (-)
LOC110499148 LOC106589265 coding downstream 26992 19262991 ~ 19277123 (-)
LOC110499154 LOC106589262 coding downstream 208782 19054126 ~ 19095333 (-)
LOC110499157 LOC106589261 coding downstream 300248 18890070 ~ 19003867 (-)
LOC110498770 LOC106589258 coding downstream 416623 18754094 ~ 18887492 (-)
LOC110499146 NA coding upstream 51 19305650 ~ 19312301 (-)
LOC110499144 LOC106589269 coding upstream 56017 19361616 ~ 19376232 (-)
LOC110499142 LOC106589272 coding upstream 95890 19401489 ~ 19422945 (-)
LOC110498769 LOC106589273 coding upstream 132992 19438591 ~ 19555924 (-)
LOC110499140 LOC106589275 coding upstream 279285 19584884 ~ 19613597 (-)
G1671848 NA non-coding downstream 18 19299958 ~ 19304097 (-)
G1671831 NA non-coding downstream 47263 19256463 ~ 19256852 (-)
G1671830 NA non-coding downstream 48642 19255051 ~ 19255473 (-)
G1671829 NA non-coding downstream 49367 19254122 ~ 19254748 (-)
G1671776 NA non-coding downstream 51105 19241068 ~ 19253010 (-)
G1671877 NA non-coding upstream 27805 19333404 ~ 19334931 (-)
G1671856 NA non-coding upstream 78391 19383990 ~ 19397036 (-)
G1671855 NA non-coding upstream 93103 19398702 ~ 19478436 (-)
G1672002 NA non-coding upstream 341261 19646860 ~ 19647148 (-)
G1672003 NA non-coding upstream 341599 19647198 ~ 19647493 (-)
G1671580 NA other downstream 661231 18594053 ~ 18642884 (-)
G1671584 NA other downstream 672028 18631507 ~ 18632087 (-)
G1671578 NA other downstream 679528 18565870 ~ 18624587 (-)
G1671550 NA other downstream 888651 18409124 ~ 18415464 (-)
G1671859 LOC106589268 other upstream 21215 19326814 ~ 19406931 (-)
G1671895 LOC107575789 other upstream 126540 19432139 ~ 19435041 (-)
G1672381 LOC106589294 other upstream 943860 20249459 ~ 20251165 (-)
G1672588 NA other upstream 1315143 20620742 ~ 20670417 (-)
G1672649 dhx8 other upstream 1423676 20729275 ~ 20730072 (-)

Expression

LOC110499150 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.3.
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LOC110499150 Expression in each Bioproject

Bar chart with 18 bars.
LOC110499150 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 6.
End of interactive chart.

Co-expression Network