LOC110499146


Basic Information

Item Value
gene id LOC110499146
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 19305650 ~ 19312301 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037952.1
ATTATGGCAGGTTTGGTCCTCCATAGAGTTGAACCCTAGTTCTCAACAATTTGGACCACAACTTCACCAGAGTTCAGAGCACAAAGACAAATTGATGAGGAAATTACTCAAACTAGAGGCACCTAAGAGTCAAAGGAAGGACGAGGAAGCCAAACGCAAAAGGCAAACACCGACCAAGCGCTCATACACTCTCCTCAGCACTGAAACCAATCAGGCAAAGAAGACGAGAAAGGTTGCTGACGGGACAAGGGATCTTCTCCTTATGGAGAAGATCACAGAAAGGGAAAATAAGGctaaggaagaggaggaagaggatatgAAGGCTCTTAAAAAAAGAGGTGAAACAGTTGAAGGTCCAAAACCAGGAACTGAAAACCCTGAACATTGTCTCTGCAGAGAGGTATGTATTGCTATAGGCATGTTTGTGTTGTTATTAAGGAATCATCtgaatgtctctctcttctgtctgtctctcgctccttTCATATGATTGAATTGAAAAGAGGtttatttgtatctgtttttcaatctcatGAGTAGCCTTGCTTCTAAAACTTGAAGCTGTGCCCCAGCTTCTACCCTCTCAGGTCACTGCCCAACCACTTACAAAGGTAAGTGCTTAATTAGCCATTCAGAAATTGTACTTGTCATCTTTCAACGTTGAACAGTGCTAAGATATTAGTGTATGATTATGTTAACATTTATACAGCCAGGACCATCGGCAGAGGGGATTACCCCTTTGGGCATCAGTAATGCCATGCTGCGGGCCTGCGGTAGAGGTGGCACCTCCAAGCACAACCATGGTTAAAGAGCTGGCTGTGGCTTTTTGGGAGACAGGTGATTGCTACCTATAGATTATCTGCAAAAATTGGAAATGCCAATAAAGGGACTTCAGCAAAGCCGGCCCTTGATGAGGGAAAAGTCAAACTGAtaattggtatgggaaacatttAGATCCTAATGCAGCACTAGAAAGTGATTTCCAGTGGCAAAACCCATATATTAACTcataaaatgttttacttttgacCCGATTTGGATTTCTAGGAACTGTGCAAAACAAGTTTCCAGATATACCCCCCAAATTCATCCGAGCAGCACTAAGGGAGAAGATGAACGATGAGCATAAACTTCACATCAAGTATAGGTTTACATACTTTCTTGTCATGTATAGGTGTGTTTTCAGTGTTAATATACACATTTCTTCTGTGTTTTCAGACAAAAAATGCTTACATGGCCATTGTTTCCCTTAACCCCAAATTACCCCTTTTATTCAGTTATAGTATAACCCCTCCTATACTCCGCGTCCTACA
>XR_002469922.2
TTCACATTGCGACTATGCGCAATTAGCCTTAAATATTTCCAAACATTGCCTATAATTTGCATTTAGGCGCACATTCATAACAGGATGAGAAGCATGTAACTCAGCTGTCATTTATCCCATTCTAAAATTTAAATGTGTGAGTTGTTGGCTAATCTTCAAAGACTGGTGCCATGGTCCAATTTGGGCATGTGCGACATCATCATCCAATTCAATTTTCAGTAGCAATTTGTTTTCTGGTCCCTTTGGCACTCTAGTAGCATATCCACGTGGCATGCCAATATCAATATATTTGATATTAGAAATCTTAACTGTAGGAGATCAAAATCAAGGGTCAAGTAAGACCTAGACTTCGATCCATCCAAACCATTGACCGCATGCGAACACCAAATTACAGAGCGGCTATTTTGAATCAATGTACAGCAACAGCACTCGAGAACACAACTCGTCGACTAGGATCTACGGCGAGCACAAAGACAAATTGATGAGGAAATTACTCAAACTAGAGGCACCTAAGAGTCAAAGGAAGGACGAGGAAGCCAAACGCAAAAGGCAAACACCGACCAAGCGCTCATACACTCTCCTCAGCACTGAAACCAATCAGGCAAAGAAGACGAGAAAGGTTGCTGACGGGACAAGGGATCTTCTCCTTATGGAGAAGATCACAGAAAGGGAAAATAAGGctaaggaagaggaggaagaggatatgAAGGCTCTTAAAAAAAGAGGTGAAACAGTTGAAGGTCCAAAACCAGGAACTGAAAACCCTGAACATTGTCTCTGCAGAGAGGTATGTATTGCTATAGGCATGTTTGTGTTGTTATTAAGGAATCATCtgaatgtctctctcttctgtctgtctctcgctccttTCATATGATTGAATTGAAAAGAGGtttatttgtatctgtttttcaatctcatGAGTAGCCTTGCTTCTAAAACTTGAAGCTGTGCCCCAGCTTCTACCCTCTCAGGTCACTGCCCAACCACTTACAAAGGTAAGTGCTTAATTAGCCATTCAGAAATTGTACTTGTCATCTTTCAACGTTGAACAGTGCTAAGATATTAGTGTATGATTATGTTAACATTTATACAGCCAGGACCATCGGCAGAGGGGATTACCCCTTTGGGCATCAGTAATGCCATGCTGCGGGCCTGCGGTAGAGGTGGCACCTCCAAGCACAACCATGGTTAAAGAGCTGGCTGTGGCTTTTTGGGAGACAGGTGATTGCTACCTATAGATTATCTGCAAAAATTGGAAATGCCAATAAAGGGACTTCAGCAAAGCCGGCCCTTGATGAGGGAAAAGTCAAACTGAtaattggtatgggaaacatttAGATCCTAATGCAGCACTAGAAAGTGATTTCCAGTGGCAAAACCCATATATTAACTcataaaatgttttacttttgacCCGATTTGGATTTCTAGGAACTGTGCAAAACAAGTTTCCAGATATACCCCCCAAATTCATCCGAGCAGCACTAAGGGAGAAGATGAACGATGAGCATAAACTTCACATCAAGTATAGGTTTACATACTTTCTTGTCATGTATAGGTGTGTTTTCAGTGTTAATATACACATTTCTTCTGTGTTTTCAGACAAAAAATGCTTACATGGCCATTGTTTCCCTTAACCCCAAATTACCCCTTTTATTCAGTTATAGTATAACCCCTCCTATACTCCGCGTCCTACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037952.1 False 1313 mRNA 0.42 3 19305650 19308476
XR_002469922.2 True 1700 mRNA 0.41 3 19305650 19312301

Neighbor

gene id symbol gene type direction distance location
LOC110499150 NA coding downstream 51 19304115 ~ 19305599 (-)
LOC110499147 LOC106589265 coding downstream 10701 19277271 ~ 19294949 (-)
LOC110499148 LOC106589265 coding downstream 28527 19262991 ~ 19277123 (-)
LOC110499154 LOC106589262 coding downstream 210317 19054126 ~ 19095333 (-)
LOC110499157 LOC106589261 coding downstream 301783 18890070 ~ 19003867 (-)
LOC110499144 LOC106589269 coding upstream 49315 19361616 ~ 19376232 (-)
LOC110499142 LOC106589272 coding upstream 89188 19401489 ~ 19422945 (-)
LOC110498769 LOC106589273 coding upstream 126290 19438591 ~ 19555924 (-)
LOC110499140 LOC106589275 coding upstream 272583 19584884 ~ 19613597 (-)
LOC110499139 NA coding upstream 302241 19614542 ~ 19640508 (-)
G1671848 NA non-coding downstream 1553 19299958 ~ 19304097 (-)
G1671831 NA non-coding downstream 48798 19256463 ~ 19256852 (-)
G1671830 NA non-coding downstream 50177 19255051 ~ 19255473 (-)
G1671829 NA non-coding downstream 50902 19254122 ~ 19254748 (-)
G1671776 NA non-coding downstream 52640 19241068 ~ 19253010 (-)
G1671877 NA non-coding upstream 21103 19333404 ~ 19334931 (-)
G1671856 NA non-coding upstream 71689 19383990 ~ 19397036 (-)
G1671855 NA non-coding upstream 86401 19398702 ~ 19478436 (-)
G1672002 NA non-coding upstream 334559 19646860 ~ 19647148 (-)
G1672003 NA non-coding upstream 334897 19647198 ~ 19647493 (-)
G1671580 NA other downstream 662766 18594053 ~ 18642884 (-)
G1671584 NA other downstream 673563 18631507 ~ 18632087 (-)
G1671578 NA other downstream 681063 18565870 ~ 18624587 (-)
G1671550 NA other downstream 890186 18409124 ~ 18415464 (-)
G1671859 LOC106589268 other upstream 14513 19326814 ~ 19406931 (-)
G1671895 LOC107575789 other upstream 119838 19432139 ~ 19435041 (-)
G1672381 LOC106589294 other upstream 937158 20249459 ~ 20251165 (-)
G1672588 NA other upstream 1308441 20620742 ~ 20670417 (-)
G1672649 dhx8 other upstream 1416974 20729275 ~ 20730072 (-)

Expression


Co-expression Network