LOC110499141 (LOC106589274)


Basic Information

Item Value
gene id LOC110499141
gene name LOC106589274
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 19568972 ~ 19583925 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576074.2
CTACAGTACGATAGGTGGCGTGTGTTCTAATGGATATCGTAATAGTATCTTCGTTAATTCATTGCATTTGGACTGAGAGGAAATGCGGGACCGAACTAAGGAACTTGGCAATACCGCAGAGGCGTCAGACGAGGATGAAGAGGGCAGGGCCCTTATGGTCAAACCGGGGATTTCTACAgtgaaggaagagaaggagaatgaTGCTTTTTTCAAGAAGGTCCTAGAGATTCGAGGGGTAATGGAGATGCTTAAAAAGGTGGTCTCTGACCTTGAGAACAAACAGAAGACAGTGTTGGGTGTGGCACTGCCAGAGGACGGTATGAAAAGGGAACTCCAAACCCTTCGGGAAGAGATCAAAACAATGGCAATGCAGATCCAGAAGAAACTGAACAccATTGAACCCAAAAAAGGGGATGATGATGGGAAATACGTTCCCATAAACCTAAGGATGCAGAGAGCACAAcatGGTGTCTTGTCTCGAGAGTTTGTGGAGTTGATGGACCACTGTAACACCATCCAGGCTTCCTACAGAGATCGCAACGTGGAGAGGATACAAAGGCAGCTCAGAATAACGGGCACCAATGTTACAGATGAGGAGTTGGACGGTATGCTTGAAAGTGGACAGACTGATGTTTTCACACAGAATATCCTGATCGACGCTAAAGCCACTAAGCAGGCACTGAATGAGATTGAGTCCCGGCATGACGAGATCCTTAAACTGGAAAGGAGCATTAAGGACCTGCATGACATGTTCCGGTACCTGGCCATGGAGGTGGAGGCTCAGGGGGAGATGGTCAACCGCATTGAAGCCAACATCATCAATTCAACTAACTATGTGGAAAAGGCAGTGGCAGACACTGCGAAGGCTGCCACCTACCAAAACAAAGCACGCAAGAAGAAGATATGGATTGCATTATGCTGTGCCATTCTCCTCCTCATTTTAGCAATCTCATTGGCTATCAGCTTCTCCTGAGATCCTGATTGTCATCTTCCTCTAACCCACTTCTGCCCTGGGACCTTGAAGAGAAGTCCTGTCTTATTGATATCACTGACCTCTTAACTATCGATACCCTGGCACAGACCGGgaggcacacatgcacaaacagcCATTGTCTCTCATGCTCATACGTTAACTGCCCCACTTTCAGCAAAAGGCAATGCTGAAGTTTTTTTGGGCTCTCTGTGGTGCCCACTCTAAATGAAAGTGTGGACAACTCCGTTACTTACTCAACTTGTTGGACCCATACGTGTCCCCAAGGAAGAATGCAGTATTTGAACCGACACTGACAAGGTGCTGATCGGATTTGCTCAGGAAAACTAAAGCGCTAAAGTGATTCTTATTGTATTAGTCTTGTATTAGTACAAAGCGGGAAAAAAACATTAAGCGCTTATGGCTTCTTGTTTTTAAATGCAGATCTAGAATAATATAATTGTATATCGCCAATTTATTATTTGGTGAGTAATTAAGACGTGCCGTTATCAAATTTGAAAGGTATCTGAAATGAGTTCCATGTGACTCTTTTATAAAGAATTGGCACTTGAAATGTCTCTCCCATTAGGAGAATGTGGTCTAAGCATGTCCTATTCACTTCAGTATTTATTTATAATTTTAATATTATGGAAGCTGCTATGTTTAGTCTTGCCACAGTAATAGGAACCCTTATAGTTATGGTGCCTTTTTCCCCCTAATTAACATTTTCTTGTGTTTGCAGACATCTAAGGGCTCTGTCTGAGATCATGGAGTATAGTAGCGCACTACCTTATTTTAAAGAAGGGATGGAATCTGTTCTGTAATTATTCAATGCGCTTCTGCTTCAAGAACTCTAACCATTTTATCAGATTTGTTTTTCAAACCGTAAAGAGATCAGCCATGGTACTTTACCCTAGCCTTAATTCTCTGTGCCGACTAGCTCCTCCCTATGAAGTGACAAGAGGAGCTAAATACTTGTACAGTATTTGGCGAAGGGAGAAACGGGATGAGTGAGGAGAGCAGTGAAGTACATTGTTACTGTATATTATGTGGCTGTTGAATTTTGTATCAAACGTTCAgcaattttaatttaaaaaaatgaaatgggTTTAACTGTTGCCCAGATTAAAGTTAGCAGAGTATGG
>XM_021576073.2
TTCTCTGAAATACTAGCTGAAGAGGAAGTAGCAGCAAATATGTTTTATATCTGTGGTAGCAGTTTACTTGTTGAATGACAAACTTTGTGTGTTTTATTGCCCATGTGATTAAACAAATATTTACCTTGATATAGGATATCGTAATAGTATCTTCGTTAATTCATTGCATTTGGACTGAGAGGAAATGCGGGACCGAACTAAGGAACTTGGCAATACCGCAGAGGCGTCAGACGAGGATGAAGAGGGCAGGGCCCTTATGGTCAAACCGGGGATTTCTACAgtgaaggaagagaaggagaatgaTGCTTTTTTCAAGAAGGTCCTAGAGATTCGAGGGGTAATGGAGATGCTTAAAAAGGTGGTCTCTGACCTTGAGAACAAACAGAAGACAGTGTTGGGTGTGGCACTGCCAGAGGACGGTATGAAAAGGGAACTCCAAACCCTTCGGGAAGAGATCAAAACAATGGCAATGCAGATCCAGAAGAAACTGAACAccATTGAACCCAAAAAAGGGGATGATGATGGGAAATACGTTCCCATAAACCTAAGGATGCAGAGAGCACAAcatGGTGTCTTGTCTCGAGAGTTTGTGGAGTTGATGGACCACTGTAACACCATCCAGGCTTCCTACAGAGATCGCAACGTGGAGAGGATACAAAGGCAGCTCAGAATAACGGGCACCAATGTTACAGATGAGGAGTTGGACGGTATGCTTGAAAGTGGACAGACTGATGTTTTCACACAGAATATCCTGATCGACGCTAAAGCCACTAAGCAGGCACTGAATGAGATTGAGTCCCGGCATGACGAGATCCTTAAACTGGAAAGGAGCATTAAGGACCTGCATGACATGTTCCGGTACCTGGCCATGGAGGTGGAGGCTCAGGGGGAGATGGTCAACCGCATTGAAGCCAACATCATCAATTCAACTAACTATGTGGAAAAGGCAGTGGCAGACACTGCGAAGGCTGCCACCTACCAAAACAAAGCACGCAAGAAGAAGATATGGATTGCATTATGCTGTGCCATTCTCCTCCTCATTTTAGCAATCTCATTGGCTATCAGCTTCTCCTGAGATCCTGATTGTCATCTTCCTCTAACCCACTTCTGCCCTGGGACCTTGAAGAGAAGTCCTGTCTTATTGATATCACTGACCTCTTAACTATCGATACCCTGGCACAGACCGGgaggcacacatgcacaaacagcCATTGTCTCTCATGCTCATACGTTAACTGCCCCACTTTCAGCAAAAGGCAATGCTGAAGTTTTTTTGGGCTCTCTGTGGTGCCCACTCTAAATGAAAGTGTGGACAACTCCGTTACTTACTCAACTTGTTGGACCCATACGTGTCCCCAAGGAAGAATGCAGTATTTGAACCGACACTGACAAGGTGCTGATCGGATTTGCTCAGGAAAACTAAAGCGCTAAAGTGATTCTTATTGTATTAGTCTTGTATTAGTACAAAGCGGGAAAAAAACATTAAGCGCTTATGGCTTCTTGTTTTTAAATGCAGATCTAGAATAATATAATTGTATATCGCCAATTTATTATTTGGTGAGTAATTAAGACGTGCCGTTATCAAATTTGAAAGGTATCTGAAATGAGTTCCATGTGACTCTTTTATAAAGAATTGGCACTTGAAATGTCTCTCCCATTAGGAGAATGTGGTCTAAGCATGTCCTATTCACTTCAGTATTTATTTATAATTTTAATATTATGGAAGCTGCTATGTTTAGTCTTGCCACAGTAATAGGAACCCTTATAGTTATGGTGCCTTTTTCCCCCTAATTAACATTTTCTTGTGTTTGCAGACATCTAAGGGCTCTGTCTGAGATCATGGAGTATAGTAGCGCACTACCTTATTTTAAAGAAGGGATGGAATCTGTTCTGTAATTATTCAATGCGCTTCTGCTTCAAGAACTCTAACCATTTTATCAGATTTGTTTTTCAAACCGTAAAGAGATCAGCCATGGTACTTTACCCTAGCCTTAATTCTCTGTGCCGACTAGCTCCTCCCTATGAAGTGACAAGAGGAGCTAAATACTTGTACAGTATTTGGCGAAGGGAGAAACGGGATGAGTGAGGAGAGCAGTGAAGTACATTGTTACTGTATATTATGTGGCTGTTGAATTTTGTATCAAACGTTCAgcaattttaatttaaaaaaatgaaatgggTTTAACTGTTGCCCAGATTAAAGTTAGCAGAGTATGG

Function

NR:

description
syntaxin-4-like

GO: NA

KEGG:

id description
K13502 STX4; syntaxin 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576074.2 False 2115 mRNA 0.43 12 19568972 19583925
XM_021576073.2 True 2217 mRNA 0.42 11 19569014 19583925

Neighbor

gene id symbol gene type direction distance location
LOC118942048 NA coding upstream 190381 19376239 ~ 19378591 (+)
LOC110499145 LOC106589268 coding upstream 217982 19311370 ~ 19350990 (+)
LOC110499149 LOC106589267 coding upstream 265303 19295123 ~ 19303669 (+)
LOC110499151 LOC106589264 coding upstream 326277 19207252 ~ 19242695 (+)
LOC110499153 LOC106589263 coding upstream 367277 19094882 ~ 19201695 (+)
LOC110499137 LOC106589279 coding downstream 70222 19654147 ~ 19660703 (+)
LOC110499134 gip coding downstream 91252 19675177 ~ 19676923 (+)
LOC110499133 snf8 coding downstream 101483 19685408 ~ 19696205 (+)
LOC110499131 NA coding downstream 128582 19712507 ~ 19718036 (+)
LOC110499130 LOC106589285 coding downstream 142664 19726589 ~ 19728624 (+)
G1670705 NA non-coding upstream 3032 19565653 ~ 19565940 (+)
G1670694 NA non-coding upstream 11692 19556976 ~ 19557280 (+)
G1670560 NA non-coding upstream 128334 19380309 ~ 19440638 (+)
G1670526 NA non-coding upstream 171770 19389269 ~ 19397202 (+)
G1670521 NA non-coding upstream 310820 19257917 ~ 19258152 (+)
G1670747 NA non-coding downstream 60691 19644616 ~ 19644835 (+)
G1670749 NA non-coding downstream 63498 19647423 ~ 19647694 (+)
G1670750 NA non-coding downstream 63967 19647892 ~ 19648124 (+)
G1670755 NA non-coding downstream 67959 19651884 ~ 19652084 (+)
G1670765 NA non-coding downstream 86750 19670675 ~ 19671010 (+)
G1670209 LOC105007702 other upstream 1447805 18051611 ~ 18132470 (+)
G1670125 LOC105007702 other upstream 1789598 17717036 ~ 17812707 (+)
G1671091 NA other downstream 643870 20227795 ~ 20228168 (+)
G1672918 NA other downstream 1505478 21089403 ~ 21089830 (+)
G1672973 NA other downstream 1556600 21140525 ~ 21191078 (+)
G1673044 NA other downstream 1712447 21296372 ~ 21296854 (+)
G1673063 NA other downstream 1732873 21316798 ~ 21317412 (+)

Expression


Co-expression Network