LOC110499137 (LOC106589279)


Basic Information

Item Value
gene id LOC110499137
gene name LOC106589279
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 19654147 ~ 19660703 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576064.2
GAAGAATCAAATCAAGAAGAAGAAGTAGGAGAAGGATTAGGAGTAGGACGGAAGTGAAGCTAACTTTCTGCGGAAGTCCATAAAAGAAAACAAATCCATCTATCTGTGCAAATAGGGAGTCTGTTTCCGATTTAAAACCGGTGAAGACCTCTCAAACGATGGAGTTCCTGTTTGGGAAGAGGAAGACCCCAGAGGAGATGCTGAGGCAGAACCAGAGGGCACTGAATCGAGCCATGAGAGATCTGGACAGAGAGCGACAAAGACTGGAGCAGCAGGAGAAGAAAATAATAGCTGACATTAAGAAAATGGCCAAACAAGGACAAATGGATGCTGTCAAGATCATGGCGAAGGACTTGGTTCGCACAAGGCACTATGTGAAGAAATTTATTATGATGAGGGCAAATATCCAGGCAGTCAGTCTGAAAATCCAGACTCTCAAGTCAAACAACAGCATGGCACAGGCAATGAAAGGAGTCACCAAAGCCATGGCTACCATGAACAGACAGATGAAGTTGCCACAGATTCAGAAGATCATGATGGAGTTTGAACGACAGAGTGAGATCATGGACATGAAAGAGGAGATGATGAATGATGCCATAGATGATGCCAtgggtgatgaggatgatgaagaAGAGAGTGATGCTGTTGTGTCCCAAGTGTTGGACGAGCTGGGTCTCAATCTCTCTGACGAACTCTCAAATCTGCCATCCACGGGAGGTAGCCTCTCAGTGGCAGGTGGGAAGAAATCTGAACCCCAGCCAGCTCTGGCAGATGCAGATGCTGACCTGGAGGAGAGACTGAATAACCTCAGGAGAGACTGACACAATAGCACTTTGGCTGCCTGGTGTTAATACAGCTAGATGTACTCAGCAACTTAGATTTctgtatctatactgaacaaaaacataaacgcaacgtgtaaagtgttggtcccatgtttcatgagctgaaataaaagatcccggacattttccatacgcacaaaaa

Function

NR:

description
charged multivesicular body protein 2a

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0031902 late endosome membrane cellular_component

KEGG:

id description
K12191 CHMP2A; charged multivesicular body protein 2A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576064.2 True 987 mRNA 0.45 6 19654147 19660703

Neighbor

gene id symbol gene type direction distance location
LOC110499141 LOC106589274 coding upstream 70222 19568972 ~ 19583925 (+)
LOC118942048 NA coding upstream 275556 19376239 ~ 19378591 (+)
LOC110499145 LOC106589268 coding upstream 303157 19311370 ~ 19350990 (+)
LOC110499149 LOC106589267 coding upstream 350478 19295123 ~ 19303669 (+)
LOC110499151 LOC106589264 coding upstream 411452 19207252 ~ 19242695 (+)
LOC110499134 gip coding downstream 14474 19675177 ~ 19676923 (+)
LOC110499133 snf8 coding downstream 24705 19685408 ~ 19696205 (+)
LOC110499131 NA coding downstream 51804 19712507 ~ 19718036 (+)
LOC110499130 LOC106589285 coding downstream 65886 19726589 ~ 19728624 (+)
LOC110499129 LOC106589284 coding downstream 68069 19728772 ~ 19731361 (+)
G1670755 NA non-coding upstream 2063 19651884 ~ 19652084 (+)
G1670750 NA non-coding upstream 6023 19647892 ~ 19648124 (+)
G1670749 NA non-coding upstream 6453 19647423 ~ 19647694 (+)
G1670747 NA non-coding upstream 9312 19644616 ~ 19644835 (+)
G1670705 NA non-coding upstream 88207 19565653 ~ 19565940 (+)
G1670765 NA non-coding downstream 9972 19670675 ~ 19671010 (+)
G1670780 NA non-coding downstream 51394 19712097 ~ 19712313 (+)
G1670783 NA non-coding downstream 60082 19720785 ~ 19721072 (+)
LOC110499153 LOC106589263 other upstream 528911 19094882 ~ 19201695 (+)
G1670209 LOC105007702 other upstream 1532980 18051611 ~ 18132470 (+)
G1670125 LOC105007702 other upstream 1874773 17717036 ~ 17812707 (+)
G1671091 NA other downstream 567092 20227795 ~ 20228168 (+)
G1672918 NA other downstream 1428700 21089403 ~ 21089830 (+)
G1672973 NA other downstream 1479822 21140525 ~ 21191078 (+)
G1673044 NA other downstream 1635669 21296372 ~ 21296854 (+)
G1673063 NA other downstream 1656095 21316798 ~ 21317412 (+)

Expression


Co-expression Network