LOC110499132 (calcoco2)


Basic Information

Item Value
gene id LOC110499132
gene name calcoco2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 19696235 ~ 19706467 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110499132
TACGGCTGATGACGTTCGTGCACACTTGAAATTAATACCTGGAACAGTATTCTGAGTTGACGTCTGATTTGCGACCTTTATATATACACAATCTATGGTTGCGACACCGCTGAGTTGAACAGGCAGTGGCAGTCCAAACTTCATAACACAGAATGGAGAGCTTCGAAACTGCAGCCAACATGGAATTGTCAACAAACTTTTCCCAGGTTGTGTTTCAGGAAATCCCCAACTCATATGTGTCAAATGTTGCCTTGACTTGCTGCTACACTCTGACAGCAGCAATCCAACCGAATCCCAGAGATTGGGTGGGGATATTCAAGGTGGGCTGGAGCACCACAAAGGATTATCACACATTTGTGTGGGTAGAACCATCATTGGATCTGATAGGACTGGAGCCAGTCAGAAAACAAGTGCTTTTTACTGCATACTACTTGCCAAAGGATGACTCAGCGTTCTATCAGTTCTGCTATGTTGATAGCACTGGCCAAGTGAGAGGAGCCAGCACCCCCTTCTGTTTTAAAACCCCAGGGGAACAAAGCACAGACTGCAGCCTTGAAAATGACCTCTTGGTTATCATAACTCAGGAAAAGGTAGAGCAACGTGAGCGGGAGAAAGAAGAGCTGGTCATGGAGTTGGGGCAACTGAAAGAACAAAATGAGACTGAGAAGTGCTCTGAAAGAGCAACAGCAAGAGATTGATCACCTCAAGCTGTCAAATGAGGAATTATACCAGGCAGATGGGAACACTGAGAATGCAAGAAAGCATGAAGAACTGACACAGAACACTAAACTAATGGATGACTCACACAGAGGGCAGGAGGAACAGGTGGAAAaaagtgagagggagaaagaagagctGACCATGGAGTTGGGGCAACTGAAAGAGCAAAATGAGACTCTGACATGTGCCCTGAAGGAGCAGCAACAAGAGATTGATCACCTCAAGGAATCCAAAAAGGAACTGGTACAGTTAGTGAGCAAACTGGAGCAACAGCAAGAGAATACTAGGGGGCATGAAGAACTGGCACAGAATGCCAAATCATTGGATGAatcacagagaggacaggagTCTCTGACCCCCATTCATGAAAAATATTTGGGGAATTTAGTGTCAAAACATGTGACAGCTTCTCTGACCCCTATTTGTGAGAAATATGAAAGAGCGTTGATCAAGATCAAACAGCTAAAGAAAGAACGAGAGGTGTTAAGAGGAAAGGTTGAGGTCCAAAGTGTGGAGATCGCACAGCTGAGCCCAAGGCTCAAAGAATCTGAGCGGGAGTCACACAGACTGAAGGCTCACATTCAGCTTTTACAGGTGGATCTCCAGAGCAGTAAGAAAGAGAAGAAGTGTTCTGCCCTAAAGGAGCAACAGCAAGAGGAATCCAAAGAGGAACTGGTACAGTTAGTGAgcaaactggagcagcagcaacaGAATACTAGAGAGCATGAAGAACTGGCGCAGAATGCCAAATCAATGGATGAatcacagagaggacaggagTCTCTGACCCCCATTCATGAAACATATTTGGTGAATATAGTGTCAAAACATGTGACAGCTTCTCTGACAACTATTTGTGAGAAATATGAACAAGCGTTGAACAAGATCAAACAGCTGAAGAAGGAGCGAGAGGAGTTGAAAGGAAAGATTGAGGTCCAAAGTGTGGAAATTGCACCGCTGAGCCCAAGGCTCAAAGAATCTGAGCAGGAGTCCCACAAACTGAAGGATCATATTCAGCTTCTACAGGTGGATCTCCAGAGCAGTGAGAAGGAGAGGCTTTCTGCAGCGCTGAACAGAGTGTGTGGTGTCACACATGATCTACAGGACCTGAAGACTGGGAACAAGGCATTACGTAGAAGCCTGTCggagcaggagcagcagccaCTGCAGTTGGTGGACAGTGATTGGAAGGAGCAATACCAAGCCCTTCTTGGTCAGCTGGAGGAGGCTCAGACACTGTTGCACAAGGAGTTGCAGGCTTCCAACAATACCCGCAAACGTGCAGAGCAAGCAGAAAGGGAACTGGAGGAGCTCAAGGAGTGCATGGAGAGCACGGCCATGACGTCTGATCAGACAAAGCAGAAGAGCAGCAAACTAGAGATGCAACTTTCAAAGTTAAACAAAATCATTGAGGAGAAAGAAAACATGGCAGAGATCGCTAAAGTAGAGAAAGAGGAGTTGTCCAGAGAGAATCAgGATCTCAAAAGAGATATTGAAAGACTTCGCAAGGAATTTGATGACGTCCAGGCTGCTCCAGTGCCCATGCAGCATCTCAACCCTTATGGCTCTTcaactgaccctacccagcaagAGGAACTGGCTGACTCTCTCCACTCTTGGAACCCATATGAAACCCCAGGCACGGCTACAAACCTGGAGGAAGAGTTGTCCTTGGAGTGTCGTCACTGCCATGAGTCCTTCCCTGGCATCACCCAGGACGAGCTGGAGCTGCACGAGCACAGCCACAGAGTGTGCCCCTTCTGCACGCTCATCTGTGACGGAATGGAACAGGCTTTATATGAAGACCACGTCTACAGCCATGAGGTGTAGAGATGCTACTTCCTCACAATCCAGAGAGTTGTTTGTGAGTTGACTACTCATAAAAAAAGCTGATACTCTACTAATTATTTAGTAAGGGGGGGGGAATAAATATGGGCTAACAACCAATTCAGGATATTATATAAATAACATTTATAGTCCCCTGTTCATTACTGTAAATGTCCTCTTACCTGGTCAAATAAGTTAAGAATTAAATGTCTGGTAAATCCGTAGCTAATTTATTTTGCCTGAAATGTATCATACCATATAATATTTGTTTGAAGGTACTTCATTTTGGTCTTGGAGTAGAATTTGCCTCCATTGCTGGGTGATAGGAATGTATTGCTTTGCTATTTAATGGTTTCCCATATTTACTCTGTTATAATCTCTGCTGAACTGTTTACTTTGCGTAATTAAACTATACTGACTTTCTGCCCTTAAACCTCCTGCATGCATAACGTGTTGCATAATAGAGTCAAACGATTAATGGTCAAATGATGCCATCTgaaaatgaaatggttcaaatgATGCCATCTgaaaatgaaatggttcaaatgGGATTCATGTGGGAAGCAACAAATAAAGTTGTCTTCACAGTTGTGTCGTCATGGAAGTA

Function

symbol description
calcoco2 Orthologous to human CALCOCO2 (calcium binding and coiled-coil domain 2).

NR:

description
tax1-binding protein 1 homolog B-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110499132 True 3154 mRNA 0.45 22 19696235 19706467

Neighbor

gene id symbol gene type direction distance location
LOC110499136 LOC106589278 coding downstream 26196 19662557 ~ 19670039 (-)
LOC110499139 NA coding downstream 55727 19614542 ~ 19640508 (-)
LOC110499140 LOC106589275 coding downstream 82638 19584884 ~ 19613597 (-)
LOC110498769 LOC106589273 coding downstream 140311 19438591 ~ 19555924 (-)
LOC110499142 LOC106589272 coding downstream 273290 19401489 ~ 19422945 (-)
LOC118942049 NA coding upstream 136639 19843106 ~ 19846496 (-)
LOC110499128 LOC106589286 coding upstream 142936 19849403 ~ 19865429 (-)
LOC110499125 LOC106589287 coding upstream 180086 19886553 ~ 19898320 (-)
LOC110499124 LOC106589290 coding upstream 200868 19907335 ~ 19913870 (-)
LOC110499122 LOC106589292 coding upstream 234999 19941466 ~ 19961356 (-)
G1672023 NA non-coding downstream 11957 19683951 ~ 19684278 (-)
G1672006 NA non-coding downstream 47005 19649021 ~ 19649230 (-)
G1672004 NA non-coding downstream 48168 19647840 ~ 19648067 (-)
G1672003 NA non-coding downstream 48742 19647198 ~ 19647493 (-)
G1672002 NA non-coding downstream 49087 19646860 ~ 19647148 (-)
G1672041 NA non-coding upstream 5037 19711504 ~ 19711762 (-)
G1672063 NA non-coding upstream 36102 19742569 ~ 19742953 (-)
G1672115 NA non-coding upstream 178041 19884508 ~ 19968165 (-)
G1672119 NA non-coding upstream 198730 19905197 ~ 19970513 (-)
G1672171 NA non-coding upstream 231682 19938149 ~ 19939700 (-)
G1671895 LOC107575789 other downstream 261194 19432139 ~ 19435041 (-)
G1671859 LOC106589268 other downstream 289304 19326814 ~ 19406931 (-)
LOC110499154 LOC106589262 other downstream 623048 19054126 ~ 19095333 (-)
G1671580 NA other downstream 1053351 18594053 ~ 18642884 (-)
G1672381 LOC106589294 other upstream 542992 20249459 ~ 20251165 (-)
G1672588 NA other upstream 914275 20620742 ~ 20670417 (-)
G1672649 dhx8 other upstream 1022808 20729275 ~ 20730072 (-)
phf5a LOC102780084 other upstream 1882562 21589006 ~ 21596518 (-)
G1673740 LOC106589538 other upstream 2129866 21836333 ~ 21844793 (-)

Expression


Co-expression Network