LOC110499130 (LOC106589285)


Basic Information

Item Value
gene id LOC110499130
gene name LOC106589285
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 19726589 ~ 19728624 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576057.2
CACTGGTGACCCCTAGTACGCAACATGAGCCTCCCAGGAGGGCAATATTGCAACCGCAGACGTTCGCTATTGGCCAGACGTTGATCAGATGGTACAGTTCCCTTCTGCCCTATTCAGTGGCATCACGCAAGCCCTCTTCAGCTAGAACCAAATCTCCGATAAAGTAATGGCAAAACCACTTGGACTATAAAACATTACAAATCATATTCCTCGGAGCATACCGTTGTTCATCCAATGAGTTCCTATTTTGTCAACTCAACTTTTCCTGTTTCTCTGCCGGGAGGACAGGAGTCTCTCCTGGGTCAGATACCATTATATTCCTCCGGATATACTGACCCTTTAAGACACTTTTCTAACGCTACATATGGAGCTGCCAATATGCAAGAGAAGGCTTACCCAACCTCATATTACCAGCAAACCTCTGGTGTCTACGGTCGCCCCAGCACCAGCGCTCCCTGCGACTACCCAGCTGGAACTTTTTACCAGGACAGTGACCGTTCGTGCGCTTTCGCAAGTCGAGAGGAGCAGCCGCTCTTAGTAACTCAGGATCAGCGCAGGTCAGAGTGCCTCGAGCAAAATGTAAACATAACCACTGCTGTGGACGACAAGTCTTCTTCTCTGCTTTATCCGTGGATGCAAAGGATGAATTCTTGCACCGCCGGGACCTTTGGCAGCAGTGGGCGCAGGGGCCGTCAGACCTATACTCGATACCAGACTCTTGAGCTCGAGAAAGAATTTCATTTCAATAGGTATTTGACCAGGCGTCGTCGAATCGAGATTTCGCATGCTCTATGTCTCACTGAACGCCAGATAAAGATTTGGTTCCAGAATCGCAGAATGAAGTGGAAAAAGGAGAACAAAGTTATGAATCCTTCGAAACCCAGCGACGAAGAAGAGGAAAATAAGACAGATTAAAAGACATTGAATAAATAAGCTACACAAGCCATTACTGTTGTAACATGAATTGAGAGTTGttgaatttttgttgttgtttttcagaaAATAGCTGCATAGGCCTACACATTTTTGTGAAATATGTCAATAGGCCTAGACTAATATATTTGCACGATTAAATAGCGTATGTAGGTTAGAAACAGGTTAAAAACAACTGTAGGCTAGCCTATTCTTATTTGAtcgtatttctgtttttagtttTGTAAATCTATTTACTTGACAGTAAACTCGCACATAATTGCAGGGGCACCATTTTTTTGCAGGGGTGTTGATGTGCAACAACAGGCCTAGTCAAAATGACACGATAAGTCAATAGTTTGCTTCAAAAATGTCCTTAATATCGATACAAGAGAGAGGCTTTGTAATAGCCCAGTGTGTGTTGTATATTGTTCGTTTTTGGCTTTTACATCGCCTTGTCATGTTCAACTGAATAATGTTTTGACAAGTTATGTATTGTGCACTTGCACATCTGGATGTCATGTGTGATGTAAGCAATGTTTTGCCATCttttataaatacaaataaagca

Function

NR:

description
PREDICTED: homeobox protein Hox-B6b-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09306 HOX_6; homeobox protein HoxA/B/C6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576057.2 True 1483 mRNA 0.43 2 19726589 19728624

Neighbor

gene id symbol gene type direction distance location
LOC110499131 NA coding upstream 8553 19712507 ~ 19718036 (+)
LOC110499133 snf8 coding upstream 30384 19685408 ~ 19696205 (+)
LOC110499134 gip coding upstream 49666 19675177 ~ 19676923 (+)
LOC110499137 LOC106589279 coding upstream 65886 19654147 ~ 19660703 (+)
LOC110499141 LOC106589274 coding upstream 142664 19568972 ~ 19583925 (+)
LOC110499129 LOC106589284 coding downstream 148 19728772 ~ 19731361 (+)
LOC110498767 NA coding downstream 30264 19758888 ~ 19761562 (+)
LOC110498765 LOC106589283 coding downstream 69126 19797750 ~ 19842089 (+)
LOC110499126 cbx1 coding downstream 150349 19878973 ~ 19886391 (+)
LOC110498764 NA coding downstream 172539 19901163 ~ 19903369 (+)
G1670783 NA non-coding upstream 5517 19720785 ~ 19721072 (+)
G1670780 NA non-coding upstream 14276 19712097 ~ 19712313 (+)
G1670765 NA non-coding upstream 55579 19670675 ~ 19671010 (+)
G1670755 NA non-coding upstream 74505 19651884 ~ 19652084 (+)
G1670801 NA non-coding downstream 16809 19745433 ~ 19745654 (+)
G1670894 NA non-coding downstream 149776 19878400 ~ 19878689 (+)
G1670904 NA non-coding downstream 178182 19906806 ~ 19907730 (+)
G1671244 NA non-coding downstream 784396 20513020 ~ 20513264 (+)
LOC110499153 LOC106589263 other upstream 601353 19094882 ~ 19201695 (+)
G1670209 LOC105007702 other upstream 1605422 18051611 ~ 18132470 (+)
G1670125 LOC105007702 other upstream 1947215 17717036 ~ 17812707 (+)
G1671091 NA other downstream 499171 20227795 ~ 20228168 (+)
G1672918 NA other downstream 1360779 21089403 ~ 21089830 (+)
G1672973 NA other downstream 1411901 21140525 ~ 21191078 (+)
G1673044 NA other downstream 1567748 21296372 ~ 21296854 (+)
G1673063 NA other downstream 1588174 21316798 ~ 21317412 (+)

Expression


Co-expression Network