LOC110499129 (LOC106589284)


Basic Information

Item Value
gene id LOC110499129
gene name LOC106589284
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 19728772 ~ 19731361 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576055.2
AAATGCTAATGTATTACTATAACAGATTACTGGGATACATGTCTGAGATACCTGTTGGTAAAATAGTTTAGCTTACTTTTATGTCCGAGAATGTTCAAATAAATTAAGAATGAAAAAATCCTGCATATCGTCCTCACTGACAGTTATCTCCACTGCCAGTAGATGACGCTGTCTGCCTACTTGGATTTTAGGGCGCAATGGGGAGGCACCATTGATTTGAGCATAACGACCATCATTTCGTCATCATTTGTAACCATAGAGCATGAATTACCTCTTGAAGTCATCAGTGAGAATTTACGACTGGTCAACAAAGGCACGTGATTCCCGAGCGCTCTCCCATATTTGGCCGCATACCTGGCAAAGTTCAGTAGGCTTCATTGCTATAATTCATGATTACATCATAAATCGTGAAGCAGAGGATTATAGCGACAAAGATCTACAAATCGAGTCTTTAAAAACAACCAAATGAGCTCTTACTTTGTTAACTCGTTTTCAGGGCGCTATCCGAATGGCTCCGACTATCAGTTATTAAATTATGGGACTAACGGCGCTGTGAACGGTACGTTTAGGGATTCTGGCACCATGAACTCCGGGTCTTTCGGCTGCAACTACAATGGCATGGACCTAACCGTAAATCGCACCAACACTGGTAGCCACTTCGGGGCTGTTGGGGATGATACCCGTGGTTTCCCGACCACGGGCACGGACGCCCGGTACAGACAGCCGACCTGCTCGCTCTCGTCTCCACATCCACACCCCCTGCCTTGCGGCACCCCCGAGTCTTTGGAAATAAAaagcccctctcctccatctgacCGGACCACGACCTCGGGCGGCAATAATAATCTCAACAAAGGCAACAACAGTCATTTCACAGAGATAGAGGATACCGCCGTTGTCTCTGAGTCCGAGGAAGGTGCACACACAAGCAGCACGGCTCCCCGGGCGCAACAACCACAACAGGAGTCCAACGCAACCTCCACGACGGCAAACGATTGCCAAACGCCACAAATATTCCCTTGGATGCGGAAACTGCACATTAACCATGAAATGGCTGGACCTGATGGGAAAAGGGCCCGAACAGCGTACACCCGCTACCAGACGCTAGAACTGGAGAAAGAATTTCACTTCAATAGATACCTAACccggaggaggagaatagagataGCCCACACTTTGTGCCTCACGGAACGACAAATAAAAATATGGTTCCAGAATCGAAGGATGAAATGGAAGAAGGACAATAAACTGAAAAGTATGAGTCTGGTTACAGGAGGTAGCGCGTTCCATAACTGAGCTCGAACTGCAAGTGATGATAAGGGGGAATCCGGAGTGTAAAACTAAAGTGCAGCGCCTTTCGGCATGTTGTGATTTTAGGCGGAAAGATGTGCTGTGGTCTTAAACAGGCGTTTAGTTTTCCATTGTGTTATGGTAACCTGTAGAATTTATCTTTGGAAATAGGGGGGGGAAAAAGAAAAAAAGACTCATTGTCGAAGGGTTTAAAGCCATGTGCTCTGTTTTATCTCTTGAAGGTTGTCATGTTTCACGTGAGCTCTTATATTGTGTAAACCGTCTAACAGGTGTAACGTGTACAGTAGACTATGTTTCCACACCATATGCTGCTCTTCATTGAATGTAAACCTGTAGATGATGGGATCATTCAAAGCGCTTTAGTGTACGTTTTAATGCTGTATTTATGCTTGATTATCGTGGCCAGAGCCTTAGGTTTTCAAGGAGGTTTTAAAATACAAGTAAATATGTTATGTAGACTATACCAAATGCACAAATATATCAATTGTAATTGTTTAGAACTAAGTACTTATTATGTTGCATACTAATGTGAATGTAGGCTATTCAACATTTCAATGTGATCCATTAGTAGTGGACAAGGAGGGAGTGGTATTCTGTGGATTAGCCTGTAAGGCAACAGTGATGGTAAACATTTTGCCAATTAAGCTTTTTGTATTTGTATGTGAATCTATAGAGCTGGAAATAAAGTTTCTCTCCATCGCTTGATATATTTGAAGCAAAGTATTGCAATTAATTCACCTCTTCATTAAACATATTACAAAAT
>TU1911619
ATCTCAACAAAGGCAACAACAGTCATTTCACAGAGATAGAGGATACCGCCGTTGTCTCTGAGTCCGAGGAAGGTGCACACACAAGCAGCACGGCTCCCCGGGCGCAACAACCACAACAGGAGTCCAACGCAACCTCCACGACGGCAAACGATTGCCAAACGCCACAAATATTCCCTTGGATGCGGAAACTGCACATTAACCATGAAATGGCTGGACCTGATGGGAAAAGGGCCCGAACAGCGTACACCCGCTACCAGACGCTAGAACTGGAGAAAGAATTTCACTTCAATAGATACCTAACccggaggaggagaatagagataGCCCACACTTTGTGCCTCACGGAACGACAAATAAAAATATGGTTCCAGAATCGAAGGATGAAATGGAAGAAGGACAATAAACTGAAAAGTATGAGTCTGGTTACAGGAGGTAGCGCGTTCCATAACTGAGCTCGAACTGCAAGTGATGATAAGGGGGAATCCGGAGTGTAAAACTAAAGTGCAGCGCCTTTCGGCATGTTGTGATTTTAGGCGGAAAGATGTGCTGTGGTCTTAAACAGGCGTTTAGTTTTCCATTGTGTTATGGTAACCTGTAGAATTTATCTTTGGAAATAGGGGGGGGAAAAAGAAAAAAAGACTCATTGTCGAAGGGTTTAAAGCCATGTGCTCTGTTTTATCTCTTGAAGGTT

Function

NR:

description
homeobox protein Hox-B5b-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576055.2 False 2074 mRNA 0.43 2 19728772 19731361
TU1911619 True 691 lncRNA 0.46 2 19729616 19730822

Neighbor

gene id symbol gene type direction distance location
LOC110499130 LOC106589285 coding upstream 148 19726589 ~ 19728624 (+)
LOC110499131 NA coding upstream 10736 19712507 ~ 19718036 (+)
LOC110499133 snf8 coding upstream 32567 19685408 ~ 19696205 (+)
LOC110499134 gip coding upstream 51849 19675177 ~ 19676923 (+)
LOC110499137 LOC106589279 coding upstream 68069 19654147 ~ 19660703 (+)
LOC110498767 NA coding downstream 27527 19758888 ~ 19761562 (+)
LOC110498765 LOC106589283 coding downstream 66389 19797750 ~ 19842089 (+)
LOC110499126 cbx1 coding downstream 147612 19878973 ~ 19886391 (+)
LOC110498764 NA coding downstream 169802 19901163 ~ 19903369 (+)
LOC110498763 NA coding downstream 183103 19914464 ~ 19915261 (+)
G1670783 NA non-coding upstream 7700 19720785 ~ 19721072 (+)
G1670780 NA non-coding upstream 16459 19712097 ~ 19712313 (+)
G1670765 NA non-coding upstream 57762 19670675 ~ 19671010 (+)
G1670755 NA non-coding upstream 76688 19651884 ~ 19652084 (+)
G1670801 NA non-coding downstream 14072 19745433 ~ 19745654 (+)
G1670894 NA non-coding downstream 147039 19878400 ~ 19878689 (+)
G1670904 NA non-coding downstream 175445 19906806 ~ 19907730 (+)
G1671244 NA non-coding downstream 781659 20513020 ~ 20513264 (+)
G1671247 NA non-coding downstream 785953 20517314 ~ 20517532 (+)
LOC110499153 LOC106589263 other upstream 603536 19094882 ~ 19201695 (+)
G1670209 LOC105007702 other upstream 1607605 18051611 ~ 18132470 (+)
G1670125 LOC105007702 other upstream 1949398 17717036 ~ 17812707 (+)
G1671091 NA other downstream 496434 20227795 ~ 20228168 (+)
G1672918 NA other downstream 1358042 21089403 ~ 21089830 (+)
G1672973 NA other downstream 1409164 21140525 ~ 21191078 (+)
G1673044 NA other downstream 1565011 21296372 ~ 21296854 (+)
G1673063 NA other downstream 1585437 21316798 ~ 21317412 (+)

Expression


Co-expression Network