LOC110498765 (LOC106589283)


Basic Information

Item Value
gene id LOC110498765
gene name LOC106589283
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 19797750 ~ 19842089 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036955941.1
AGCCAGGGACTTTGAATAAGCTGATGTGACATATGATATAACAACTGAAGAACACCATTCAAAGGAAGCTTTTAGTCACCTCATGCTCCGCCCCATTTTTGTAAATACGGCTTGTTATATCATATGTCACATCAGCTTATTCAAAGTCCCTGGCTGTATGCACACACGGAAATGGTTTTGGTTTGAGAATAGTAGGGTACAGGTGCTGTGTGAGTGTATGAATGTAGTGTGTGAGTATTCACAGGCTTTCATTTCAAGCAGTGAGCTGTTACAGTGTGACGGGTCAGGTCTACACAGATACTATAACCTTTCACCAAAGTATAGCTCTGATTTACCGTATCAAAATTAAAATTGCCTGAAAATTCTTCTGGAACTTTGAGAGAAGGATGGGGACAGTCTCTGATGACATTAGAAGGCTTTTGGAGGACTGTGAGCTCTTTGTATCAGATATCCTACAGGACGAGAACCTCAGTAAACATGCCAGAGAAACACGGGACGTCCTACTTAATAACTTCAGGGTGGTCCACTCCAGAAATCCTCAGGAGTTTCCTTTCAGATCTGAGCCCAGACAAGAGGACAGTTCAGATGACAACCAGAGCTCAAGTCTGGGCCGCTCGGCCCCCTCAGACGACCTGTCTGTGGCCTCTGACTACCAGGACGAGGGCTCTCCTGAGTACTTTGAGGAGATCCAATTGGTGGCAGCCCAGGATCTCAGTAACATCTTGAAACAAGGCTACCTGGAAAAGAAACGACGGGATCACAGCTTCTTCAGCTTAGAATGGCAAAAGCGATGGTGTGTCCTCAATAACACAATATTCTACTACTTTGGGAGCGACAAGGacaagcaGCAGAAGGGCTCCTTCTATATCAATGGCTACAGCGCAGAGCTGGTGGCCAACCTACGTAAAGACTCCAAGAAGAATGCCTGCTTTGAGCTGAGTGCCCCTGACCGACGCTCCTTCCAGTTCACTGCTAGCAGTCCGCGAGAGGCCAGGGAATGGGTGGATCAGATCAACTTTGTCCTGAAAGATTTGAGTTCCAGCTTCATCCCCTTTGATGacgatgaggaagaggaagaggaagaggaggaggagacctaTGATGACATTGAGGGGGTGACCGGGGCGGCCAGCCCTCCCCCTCGTCCCACCCCCGCCCCCGTCCTGCCCCAGCAGGCCAAAGCCTCTCTCAGTAGCCAGGAGGAATGGAGGCCCAAGCAGGGGGGGCaagaggaagcagaggaggatGATATCTACGAGGTGCTCCCAGACGATGACTTTCCAGAACCAATTGAGGAGATAAGTGAGAAGAGCACAAAACCAGTCTGGTCCATGGACTATGCCAACTACTACCAGGGCTTGTGGGACTGTGAGGCAGACGAGCCTGATGAGCTGGCCTTCCAGAGAGGTGACCTCATCTATATCGTCAGTAAGgagTATAACATCCATGGCTGGTGGGTCGGAGAGCTAAATGGTACCATCGGTATCGTCCCTAAAGACTTCCTCCACCCTGCCTACATCCTCTGAGCTCCAAGAAGTACTGGATCACTCTCTTATTGTTAAGATTATAAAATAATTTAATGGAGTAATGTAGCGTAACAGGTCTCCTGACACCCACTGAGATAGCCATTGAGAGAGCAGGAGATGTGTATATTCGCAGCGCTTGGCCGGCCATTTAGGACATCTGGTGGCTGAAAGTAGAACTGCGTGGGAAATTGAATCAGCATTTATAgacaggttggttgtttagcaacaaaaccgacgtgtgcgcaactatggggcaaaataACTGGCTTAGGTGGTTGACagcatgtaaactatatttagtctctaaatgtttattgaaaatgtaaatatatttgcacaatgagcacttgttgtctctcaaatacatagttacagttgttggttagctagctaattcaTTTTTAGCCATATTAGCGTAGACGTGTCATGAGTCAAAACAAGaaatggtatcaataacaagatgcaatgagctgaaacgagccacctacgattccccacatgacAGCTTCTtctcattgttgctagctatctgaccatcCAGAATCATTACACCACATGGCCTTCTGCATCATCGACATGCGCGCATCGTTGTTTCTTGACATTGTCAGCTAACCCGTCTTTATAGATATTGATATGCTCAGTAATGCTTAATTATAGCATCATTGACATCATCATTGGATTGGGAAAAATTATTCCAACTATACGCCATAGAAAAAATATCACACTGCACAATACTACAGGAACTGTATGTTACACGTTCCGCTCTGATGATCGTTTATCTTTGTATTATGCCTTACTTCTTTCTACAGTTGAGTGATGTGACTGACTGCGTTCCCAGTCCCAAACACTGAACACTTCGAGATTGATGACAAACTGAGATATTTTATTATTTCGTAATATAATGTAATGCAATGCTGTTAGTGTAAGGTTTTTGTAGAATGTTTTTGTAAAGATTGACTTAATTTCCATGCATAAATGACATTACCTTGGTCCTTCAGAGGCCTTTGGTCTACACATTGAATTATGGATCATGTGAAAAGGTTTCCTCTATCCAATTGTTTCCAGTGTGCAGTATTTGTACCCATGTGTGTGAATGGGAATGGCCAGATATTTATGAAACATTATGCCCTTGTGACTAAAATAAGAAATCCTCACCTCTGAGTGAACTGGGGGCTATTTGACATTACAAAGCATACTGACTTGTGCCTTCAACAGCCTTGTGTCTGAAGGAAGGCTACAGTGCGTGTTATCTTGATGCTGACATTAAGATATATAGGCAACAAGGGTTCAGGCTTGCTCCACTATCTTGTTTCAATTAAGAGTTTGAAATTGGAATACCTGATAATTAACAATATCAAGAAAAATACTATATTTTGATTGTTGAGCTTGTACAAATATATTTTCTTAGCCTAGTGGTTGTGTTTTTCTTATGGTTTGGGCCTACTGGCCTTTTATGTCCGAGTGAATTGATTGAGTGCTTAtgctttaacatcatgctgtttgtgactgctgtctttctaTACGCTTTTTGTGTTTTAAAAGAAGTGCACTCTCCTACACATCAa

Function

NR:

description
src kinase-associated phosphoprotein 1-like

GO: NA

KEGG:

id description
K17699 SKAP1, SKAP55; src kinase associated phosphoprotein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036955941.1 True 3091 mRNA 0.44 12 19797750 19842089

Neighbor

gene id symbol gene type direction distance location
LOC110498767 NA coding upstream 36188 19758888 ~ 19761562 (+)
LOC110499129 LOC106589284 coding upstream 66389 19728772 ~ 19731361 (+)
LOC110499130 LOC106589285 coding upstream 69126 19726589 ~ 19728624 (+)
LOC110499131 NA coding upstream 79714 19712507 ~ 19718036 (+)
LOC110499133 snf8 coding upstream 101545 19685408 ~ 19696205 (+)
LOC110499126 cbx1 coding downstream 36884 19878973 ~ 19886391 (+)
LOC110498764 NA coding downstream 59074 19901163 ~ 19903369 (+)
LOC110498763 NA coding downstream 72375 19914464 ~ 19915261 (+)
LOC110499123 LOC106589291 coding downstream 73883 19915972 ~ 19938321 (+)
LOC110499120 LOC106589294 coding downstream 330325 20172414 ~ 20291141 (+)
G1670801 NA non-coding upstream 52096 19745433 ~ 19745654 (+)
G1670783 NA non-coding upstream 76678 19720785 ~ 19721072 (+)
G1670780 NA non-coding upstream 85437 19712097 ~ 19712313 (+)
G1670894 NA non-coding downstream 36311 19878400 ~ 19878689 (+)
G1670904 NA non-coding downstream 64717 19906806 ~ 19907730 (+)
G1671244 NA non-coding downstream 670931 20513020 ~ 20513264 (+)
G1671247 NA non-coding downstream 675225 20517314 ~ 20517532 (+)
G1671251 NA non-coding downstream 679492 20521581 ~ 20521797 (+)
LOC110499153 LOC106589263 other upstream 672514 19094882 ~ 19201695 (+)
G1670209 LOC105007702 other upstream 1676583 18051611 ~ 18132470 (+)
G1670125 LOC105007702 other upstream 2018376 17717036 ~ 17812707 (+)
G1671091 NA other downstream 385706 20227795 ~ 20228168 (+)
G1672918 NA other downstream 1247314 21089403 ~ 21089830 (+)
G1672973 NA other downstream 1298436 21140525 ~ 21191078 (+)
G1673044 NA other downstream 1454283 21296372 ~ 21296854 (+)
G1673063 NA other downstream 1474709 21316798 ~ 21317412 (+)

Expression


Co-expression Network