LOC118942049


Basic Information

Item Value
gene id LOC118942049
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 19843106 ~ 19846496 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037955.1
ttccaccttacaggtgtggcatatcaagaagatgattaaacagcataatcattacacaagtgcaccttgtgcgtGGGACAATTAAGGCCACTCtacaatgtgcagttttgtcatgtagcacaatgccacagatgtctcaagttttgagcgagtgagcctccaacatcgttttagagaatttggcagaatgTCCAACTCGCCTCACGACCGCAGACCACATATAACCACGCCAGCCTAGGACATCCACATccgtcttcttcacctgcgggattgtctgagaccagccactgaTGAAATtgagaagtatttctgtctgtaataaagcccttttgtggggaaaaactaattctgattggctgggcctggctccccagtggttgTGCCCAGGCCCAGTCATgtaatccataaattagggcctaatgaatttaatgactgatttccttatatgaactgtaactcagtaaaatcgttgaaattgttgcatgttgcgtttatatttttgtttagtatatttaTAAAACGTGGTTTAGATATTGTTGTTATCAATGACTGTAGAGGTTGTAACCCACTATTATTTTGGGCTGAGTCCAAGGATTTCCATTGAGAATTGTTTATATGTTGCCACCAGCAGGGGGCGCTGGAGCACAGAGGTTTGCCCTCTCCCCTCAACAGCACTCAAAGAGGCTGTGACAATTAACcgtttctcctcctgtctcttttTTCGTTGTTCTCTTAAGCAGGTATGTGGTGTAAACAAGCACATTATCTATAGAAAATGTTAGCCTAAATGGTTATCTGAGTGATACTTACCTTTTATGTTGAAGTTGTAGAATGTAAATGTGTAAATTGATTGAGTGAAACTGTTAGCGATCTTGACATGGAGATTAGGGTTGTGGCTAAGTAAGACTAGGtcatataataaaataataaaaaatggtgCCAGATAATATTTTGGTTTGAATGTATTGATGTATAGCTCCTCTGAGGTAATATTCTACTTTGTTTATATGGTCTAGGCACTGACATCTCCCCACCCATGTGCTATGTTACAGAGTTGTATTTTTAGAGAAACACTATATGCTAAGCTAACTGTGCTAACGCTAGCCTGTCAAGCCTATAGGGTTGCTATTAGGTTAACGGCTACAGTTAGCTGGCTCAGTATTGCTTCCTACTGTGTATTCctttttgtttaacttttttttttatcttaggTTAAAGTAAAAACGGAGAAGGTATATTTTTAAATACAAGTTACTGTATCAGCTAGTATGACTTTTTTAAATACAGAGGATGTGTGTTACTGTACTTAGTTATAGTACTTTCTAGTCTTTTACAGCATCTGAGTGGATTATTTATGTTGCAGATCAAAATTCACCCCGACTCAAACTTTACTGGCCCAAAGAACATCTGTAGTGCGGAGTTGTCAACCATGACTGAGAGGTCTTGGAGcaggcaggccttccccgggaggaagagcagctccgttCTGTCAAGATCAAGGCTAGGTGGGGCTCGGGAGTAGCTTTCTCAGGCGCATTATAATTTAGTTCAAAGAAGATCTAATCACATTGGGTCTTTTTTGGGTGGTCTCCAACACAGAATGCACATATCGGAGATACATCGCCTTTGAAAAGAGGCTActcgcaactttggttttagaagtggggacatttattttatagattttttccccaatcggataaacactccaaacagcctacccgatcACTCGGAGGCGTCCGCACggtcctaaagcacacctttGCCcatgttttgtatcacattccattgataaaactgggggtgacaaaaatgcaattttcaGAATGGGGGGGAGACATGTCACTGTCCGCAGAGAAAGTTGCACCCCTGGCTATATGTATGTATTATTTGTAGCATTGTACAGCTAAGTCATCTTCTGCCCTAACTCAAATTGAAATATCTGGCTGTGTCATTATGACTTTGGACaattatttgacacattgaaGTTATTTCATTTGAACTATGGTTAAGCTAAaagggagaagatggagagagaaaaggatcCTGGAAAAGTGACAGTAATTGGTGAGAAGGTTTTTGTTCATTGATTGCAAATGAGCATTTGACAGTGTGCGGGTATTATCATGATATTGTTTTAAACATAATATAACTCATAAATGACTCATGGCAGAAATAATGGTGAATATGATTCCAGACACTGACATGGCTTAAAaggatactgtgagatttcaagaTTTAGGTCGTTTTTTTACTTACCCAGAGTCCGACGAactcatggaaacccatttttaGGTCTTTGCTTGCAGGAGATTATTGAAGTTAGTTTAGCGCAATTACTGGTAGTCTCCCACAGTAGCCAGCTCCTCTCAGGGTAATACACCTTCTAACTACTCCAAAGCTGTGTGGTTGGTCATTTATAGTCTATACATAGTAATCGATATTTTATAAATGAGCTAATTTGACTGATAATCATAAGAAACGAGATTCTAGCCACGTCCTCATTCTCTGTCCGGTTAAAGATCGCAGAGATGTACTGTATCTCTTATTATGGCGTCTGTGAGCGCATGGACAGCGCCATTGAAACAACTCTGAATCATGGATTACCGTTTCTCCTGGTCCATGGACTACTTTCAGGATGCTGTCATGATGTGCTTCCCTGGTGCAACAAAGGGACAAGTGGGAACGGCTTAAAACAGTAAAAGTAAATAAAAGTTAATGACTAGGATTAGTTAATGACTGTGTTAGctttgttgttggctagctcttctgaacaacagtgtcctgacgagtgagcacGTTTTCGATGCCAGGCGAAATCGCACCTAATTAGCTCATTGggtgtatccaaataaatgtcactagaaaacatcttaaacaaatgcaaatgcagctactttgttgttattctgtctgcactgtttgacgaGACAtttaagttagccgtagttggctagctagcaagcaagggataagaacgttgccagcgaGTATGGCAATGGAGCATTTATAATGAACAACTTGTTctctccatagatacagaacaaaaagactaaaCATTTCTAGCAACcaaaccgatagaacgaacgaccagccggcttaaCACATATCGTTTCGGGACTATATCTtttggaaggatgaaatagtatgaataaattcatcaaaataaagtt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037955.1 True 3173 mRNA 0.40 2 19843106 19846496
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110499132 calcoco2 coding downstream 136639 19696235 ~ 19706467 (-)
LOC110499136 LOC106589278 coding downstream 173067 19662557 ~ 19670039 (-)
LOC110499139 NA coding downstream 202598 19614542 ~ 19640508 (-)
LOC110499140 LOC106589275 coding downstream 229509 19584884 ~ 19613597 (-)
LOC110498769 LOC106589273 coding downstream 287182 19438591 ~ 19555924 (-)
LOC110499128 LOC106589286 coding upstream 2907 19849403 ~ 19865429 (-)
LOC110499125 LOC106589287 coding upstream 40057 19886553 ~ 19898320 (-)
LOC110499124 LOC106589290 coding upstream 60839 19907335 ~ 19913870 (-)
LOC110499122 LOC106589292 coding upstream 94970 19941466 ~ 19961356 (-)
LOC110499121 LOC106589293 coding upstream 166577 20013073 ~ 20126587 (-)
G1672063 NA non-coding downstream 100153 19742569 ~ 19742953 (-)
G1672041 NA non-coding downstream 131344 19711504 ~ 19711762 (-)
G1672023 NA non-coding downstream 158828 19683951 ~ 19684278 (-)
G1672006 NA non-coding downstream 193876 19649021 ~ 19649230 (-)
G1672004 NA non-coding downstream 195039 19647840 ~ 19648067 (-)
G1672115 NA non-coding upstream 38012 19884508 ~ 19968165 (-)
G1672119 NA non-coding upstream 58701 19905197 ~ 19970513 (-)
G1672171 NA non-coding upstream 91653 19938149 ~ 19939700 (-)
G1672173 NA non-coding upstream 97477 19943973 ~ 20041257 (-)
G1672294 NA non-coding upstream 268045 20114541 ~ 20129012 (-)
G1671895 LOC107575789 other downstream 408065 19432139 ~ 19435041 (-)
G1671859 LOC106589268 other downstream 436175 19326814 ~ 19406931 (-)
LOC110499154 LOC106589262 other downstream 769919 19054126 ~ 19095333 (-)
G1671580 NA other downstream 1200222 18594053 ~ 18642884 (-)
G1672381 LOC106589294 other upstream 402963 20249459 ~ 20251165 (-)
G1672588 NA other upstream 774246 20620742 ~ 20670417 (-)
G1672649 dhx8 other upstream 882779 20729275 ~ 20730072 (-)
phf5a LOC102780084 other upstream 1742533 21589006 ~ 21596518 (-)
G1673740 LOC106589538 other upstream 1989837 21836333 ~ 21844793 (-)

Expression

LOC118942049 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 0.25.
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LOC118942049 Expression in each Bioproject

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LOC118942049 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 6.
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Co-expression Network