Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110499124 |
| gene name | LOC106589290 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048584.1 |
| NCBI id | CM023238.2 |
| chromosome length | 46616863 |
| location | 19907335 ~ 19913870 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| pyridoxine-5'-phosphate oxidase-like |
| id | name | namespace |
|---|---|---|
| GO:0042823 | pyridoxal phosphate biosynthetic process | biological_process |
| GO:0055114 | oxidation-reduction process | biological_process |
| GO:0008615 | pyridoxine biosynthetic process | biological_process |
| GO:0010181 | FMN binding | molecular_function |
| GO:0004733 | pyridoxamine-phosphate oxidase activity | molecular_function |
| id | description |
|---|---|
| K00275 | pdxH, PNPO; pyridoxamine 5'-phosphate oxidase |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021576047.2 | True | 1447 | mRNA | 0.44 | 7 | 19907335 | 19913870 |
19,900,000
19,901,000
19,902,000
19,903,000
19,904,000
19,905,000
19,906,000
19,907,000
19,908,000
19,909,000
19,909,000
19,910,000
19,911,000
19,912,000
19,913,000
19,914,000
19,915,000
19,916,000
19,917,000
NC_048584.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110499125 | LOC106589287 | coding | downstream | 9015 | 19886553 ~ 19898320 (-) |
| LOC110499128 | LOC106589286 | coding | downstream | 41906 | 19849403 ~ 19865429 (-) |
| LOC118942049 | NA | coding | downstream | 60839 | 19843106 ~ 19846496 (-) |
| LOC110499132 | calcoco2 | coding | downstream | 200868 | 19696235 ~ 19706467 (-) |
| LOC110499136 | LOC106589278 | coding | downstream | 237296 | 19662557 ~ 19670039 (-) |
| LOC110499122 | LOC106589292 | coding | upstream | 27596 | 19941466 ~ 19961356 (-) |
| LOC110499121 | LOC106589293 | coding | upstream | 99203 | 20013073 ~ 20126587 (-) |
| trnaa-ugc-145 | NA | coding | upstream | 252766 | 20166636 ~ 20166705 (-) |
| LOC110499118 | LOC106589297 | coding | upstream | 383674 | 20297544 ~ 20308774 (-) |
| LOC110499116 | wnt3 | coding | upstream | 455126 | 20368996 ~ 20407349 (-) |
| G1672063 | NA | non-coding | downstream | 164382 | 19742569 ~ 19742953 (-) |
| G1672041 | NA | non-coding | downstream | 195573 | 19711504 ~ 19711762 (-) |
| G1672023 | NA | non-coding | downstream | 223057 | 19683951 ~ 19684278 (-) |
| G1672006 | NA | non-coding | downstream | 258105 | 19649021 ~ 19649230 (-) |
| G1672004 | NA | non-coding | downstream | 259268 | 19647840 ~ 19648067 (-) |
| G1672171 | NA | non-coding | upstream | 24279 | 19938149 ~ 19939700 (-) |
| G1672173 | NA | non-coding | upstream | 30103 | 19943973 ~ 20041257 (-) |
| G1672294 | NA | non-coding | upstream | 200671 | 20114541 ~ 20129012 (-) |
| G1672363 | NA | non-coding | upstream | 313334 | 20227204 ~ 20230281 (-) |
| G1672410 | NA | non-coding | upstream | 373549 | 20287419 ~ 20334652 (-) |
| G1671895 | LOC107575789 | other | downstream | 472294 | 19432139 ~ 19435041 (-) |
| G1671859 | LOC106589268 | other | downstream | 500404 | 19326814 ~ 19406931 (-) |
| LOC110499154 | LOC106589262 | other | downstream | 834148 | 19054126 ~ 19095333 (-) |
| G1671580 | NA | other | downstream | 1264451 | 18594053 ~ 18642884 (-) |
| G1672381 | LOC106589294 | other | upstream | 335589 | 20249459 ~ 20251165 (-) |
| G1672588 | NA | other | upstream | 706872 | 20620742 ~ 20670417 (-) |
| G1672649 | dhx8 | other | upstream | 815405 | 20729275 ~ 20730072 (-) |
| phf5a | LOC102780084 | other | upstream | 1675159 | 21589006 ~ 21596518 (-) |
| G1673740 | LOC106589538 | other | upstream | 1922463 | 21836333 ~ 21844793 (-) |
