LOC110499121 (LOC106589293)


Basic Information

Item Value
gene id LOC110499121
gene name LOC106589293
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 20013073 ~ 20126587 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576042.2
AGGTATCTAGTATTAGTGTACCAAGTTTGATACTTGTATCATAAAGTCGAACGATCTCAGCATACGCTGGACTACATGTGCTGCTGCTGCGTGTTGGAGCCATATGAAGCTCCTATTGCCGCGACAAGAATCCACCCCAATCGAGAACAAAGTGTTTGATTTCCAGATAGAGCAGCAGTTACCGAACTGcggaaggagagaacagaagaaCACTGGCTACTATCAACGGACATTGGGACTCGCCGCAACCTTGCGCTTTTTTGGGTGTACTGCCCCTCTTGAGCAATGGCATCTCTTGATCGATCATAGAGATGTGTGAGGATGGGGTCGCCTTTTTTATTACCATGTATTATCAGTAGATTAGATGTATCATACAGTGATACTAGAGTATTCCATAGCCTCTGATGTGAGTGCATGGAGACACATAGGCAGACAAGGTTGGGAATGTGAAAGAAGCAGCGCTCTCCGTGTATACGCGTGATCCTACAGATTGCACAGAAAAAAACACAATATTTCCCATGCATGTTTTTTGTTAGTAGACTTCGTAACTCATGGATCAAATATTGATTAATCATCAGCTGCTAATGAACACACCATAAATTAGCAGTGTTCTTGAACAAAGCTGATGCATCTTAAAGGAGACGCGCGTGCTTTGACAACATCACCACCTCAAATGGATGGAGTTATCGTCTGATCCTGGCCACAGAAATCGCCCAACTTCAAGCGCCACGTAGGTTGAGGCTCTGAGCAATGGAATCTCTATTCGGTGGTGAGCTGAGGCTACTGGGAGGTGGCGAGGGCTTGAAGGAGGACAGCTGTGGCGACGTGGGCTGGTCCTCCTCAACCCTCCCTGATGAAATGTACTCCGTCTCCCACTTCGCCCTCATCACCGCCTACCAGGACATCAAGACACGGCTCgcgggcctggagagagagaacagtggcatCAAGAGGAAGCTCAAGATCTACGAGATCAAGttccctATGATCAGTGAGTTTGGGGAGGACAGGAACTCCTACTGCAGCTTTGAGTCCAAGGAGACAACTCTACTGCAGTCAGAGAACGGCAACCTGCAGCAGAAAGTCAGCACCCTCACCCACGAGctccaGAAGAGGAAAGAGCTCCAGGAGCAGCTGGAGGATGTGATCCAGGCCTATGAGAAGATCCACATGGAGAAGAACAACCTCCAGAGAGACCTGGACAAAATGaccagtcTAGTGGAGAAGCACGCAGAGCATATCGTGGATCTGGAGTCTgctctgagacagagagacaactcGCTACAGAAGCTCAACACCCAGCTACACAGCAAGGACATCCAATACCTGCAGCTACATAGCCCAGACAATCACATGCTGGACTGTCCTGCGCTGACCCTGCAGAGCTCTCGTAGTCTAGACACTTTGTCAGACCTGAAGCTGCAGCGTCTGGAGGTGGAGCTAGAGAGGGCGCGGCATGAGGCCGAGCGGGCGTGTCAGAGGGAAGAGGAAGTGAAGGCCGAGTGTGAGAGACTGCAGGAGGAGCTGAGACAGATCCAGAACAACCACATAGGGAGGGAAATGACTTCGCCGTGTGAGCAGTGTGATGTGGAGTGGATAAAGAAGGTGGGAGATGAGCAGGTGAATTTGGCGTTAGCCTACACAGAGCTAACTGAGGAGTTGGGACGTCTCCAAGCACTGAGCTCCAAACAAAAAGAGATCTTGAGGATGGTCTCTCAGGAGCAGCATAGCCCAGtCCAACGCCACTCCCACCCCCCTTCTCCCATCCCTCACCAACGCCACTCCCCCGTGCCCCAGCGACACTCCCCCATCCCCCAACGCCACTCCCCCGTCCCTCCTCAGCACCACTCCCCCATTGCCCAGTGCCGCTCCCCGGTGCTCCAGCCGCAGCATCTCTCCCCGGACATGCACCGCCGTTCGCCCCTGCTGGACGTCAACGATGGGCCTGCCTCCTACTCCTGCCGGCCAGCCAGCCACCACCTGAGGGCCAGCTTCCAGGGCCGACGGAGCTACTCCGAGGTGGCCGACCCCTCGGCCTACCAGCGGCCACCGCGCTTCAGCCTGGACCCCGTGTCCACACTGCCCAAGCCCCGGCCCTACAGGGACTCCGGCTACTCAAAGCAGCATCAGCAGCATGAGCATGGAGGCTCCCAGCATGGAGGGTCACCCCACAGAGGAGGCCAGCTCCGAGCCTCCCAGTCTGGGCTAGAGAGGGCAGGGAGTGAGGTGGGCCTCCACGAAAGTTCCTGCCACTCTCGAGAGCTGCCCTTCCCCCTGTCCGAGGTCTCTCCCAGGTCTCACCTGCACTTTGAGCCTCTGCCCCCCCCCACGCCCGCCCCCCAGCTTCCGCAGTCCTCTGAAGACGAGGAAGAGTGGACCTGTCCGCACCCCATCAGCCCCCCACAGACGCTGGGCGTGCCCAACAATGTGTCAGCTCATGGGGTCATGAAGGGGCCAGCGTCCTGCTCGGCCTTCCCCATCCCATCCAGACCCAACACTCTGACCTGTcacccgccaggctacctgcacACAGAGCACGCCCAGTCCTGGCCCTCCATCAATCTGTGGATGGAGACAGAAGAGAGTGACATGAGAAGCTGCCCTCTGTGCCAGCTGATCTTTCCCATGGGTTACCCTGACGACGCCCTAATCAAGCACATTGACTCGCACCTGGAGAACAGCAAGATCTGATCGCCACGGCAACACGGCACCCTCTTTTTAGTTGCAACAATTCTTTACTTACATTGTGGAGTATTTTAGGTTGGTTTTGTTTTATAGCTGGGTGCCTTTTGTTTGACAAGACAAGAGGGCTTATTGTGTGTTTAGTAGTCCATGTATGGGAAAAGGTTTAGGGAATGACAAGGATGGCTTCGAGGTTCATGACAGACAATGTCCTGAGGGTTCCAGGCCACTTGCAGTCCATTTGTTTTTATATCTTACACCTTACCACTACTACTTGCTGTAAAGTGGCCTGCTTTAGTTTGACTCTCTACCCATGTACAGTATAAGGCTTGTGAAATACAGACCAACTACAATTAATTCCTGTAATTATCTGGGGGGCCAGATGGATAAATCCAGTTTGTTTGTTCTTCAGGGCTTGACAATGTGCGGTCAGAGGTCAGAGTTATGAAGAGAGGATGGAAGTGTTGTGACTGTGACTGATTGTATGTAGGGACGAATTTGTCCTGCAGGGTGGGGCATGTAGTTGCTATGACAACCTTGCTGTGGTAAAACGCATAGGCAGATTATCTGTATTATCTTGCGGCCTGATCAGAAATCCATATAATCCATATAAATCTGAGCACATTAAGTTAACCTACACTATATAAGCCTATAGTCCCCcctatattatttatttaaccccCTAGAGTTGATGTCTGCGCTCCACGGACATTTTGCTCTACTACCcccacaagcgtcttgggactGGTCTGAGGTTGGTTCAGCCGATCTGCcgacttctgtctgtagcgtccgaacagtttaGGATACAcgctaatatgacccctctgtggaaaggtgagactctcacgaacatgtcGGTTGAAGTTCTCCCTGTACCAGTTGGGGAAAAAAATGGAAGTACTGTatagtgccaaaaataaggggttaaatacatgtttaaaaaatataaataaatgtttcctgatctttcttatatctttcagatataggacagacactttagaacaaacttcctttatctgttgttccatgtagtgaatatgttattcaatgcgttggtatgggctaatagcagtaaggacaaaCATTTTTTAGCACAAAATTATTTTGTAATATTTTTGGGGATACATCAAGGggtttgaatgttcaaaatcaaatagcaaaaatatccttggtatgaccttcttaaaaacaattacatatagcttagtagaacccaaCCCCACCTCcccggcttagacagggcttagactgtaAAGGGTTAAAGGGAAATTTCCACCACTTTTTAACCTAAttgtcattatctccagcacaataccagtgtcgacatatgtgaaaatggtgcATTTCTATGCTTTGTAGAAATAAATATAGCATTTAAAAGTTCTCCcagatgacatcatcaaaagtTCCAACATTTAAAAAACTGTGATTCTCAAACTCAATGAGATGCACAGTGAAGTAAGGAGCAAGAAAATGCCCTCCTTTTTTTTATgctaccctgtgatgtcacagagaagcattttTTGGACCTTTGCTCTTATCTTTTTAACCACATTTCATAGAAACGCGCTGTTTTCACATATGCagacactggtttggtgctggaaATATTGAAAATGTATCATTTGATATATAATGTATCATTTGATATATCTGTAAGTAATGAGGCAAAAAAAATCTGTAAAAAAACATTTGTGCTGAACATGTCTTATGTTGGTGAAATTTCCCCCTCCTAAGCTTGCACAATACTGTATATAGCTAGTGGGACAGGAGTTTGTATATGGAAGAGGGAATGGAATATATTTGTATATGATAACAATGATTCAACTGGGAGTCTCTTTGGTCTTCCTGAAGATCTGACCTGCAAACACATCTGATAAAGTATTTATAAGATTTCTCAATCTTACAGTCTGAAGCTGGCACACTTTGCATTTTATATCTAATATATATACATGTCAAATATAACCCCAAAAAATCAGTGAGTGTTGTAtggaataacacacatggaatcatgtagtatccaaaaaaaaaaaaagttttaaacaaatccaaatatattttagattttagattcttcaaagtagccaccctttgacttgatgacagctttgcacagtcttggcatggctactttg

Function

NR:

description
TANK-binding kinase 1-binding protein 1-like

GO: NA

KEGG:

id description
K12652 TBKBP1; TANK-binding kinase 1-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576042.2 True 4823 mRNA 0.48 10 20013073 20126587

Neighbor

gene id symbol gene type direction distance location
LOC110499122 LOC106589292 coding downstream 51717 19941466 ~ 19961356 (-)
LOC110499124 LOC106589290 coding downstream 99203 19907335 ~ 19913870 (-)
LOC110499125 LOC106589287 coding downstream 114753 19886553 ~ 19898320 (-)
LOC110499128 LOC106589286 coding downstream 147644 19849403 ~ 19865429 (-)
LOC118942049 NA coding downstream 166577 19843106 ~ 19846496 (-)
trnaa-ugc-145 NA coding upstream 40049 20166636 ~ 20166705 (-)
LOC110499118 LOC106589297 coding upstream 170957 20297544 ~ 20308774 (-)
LOC110499116 wnt3 coding upstream 242409 20368996 ~ 20407349 (-)
LOC110499110 LOC106589303 coding upstream 639536 20766123 ~ 20807510 (-)
LOC110499109 LOC106589309 coding upstream 735763 20862350 ~ 20872069 (-)
G1672119 NA non-coding downstream 42560 19905197 ~ 19970513 (-)
G1672115 NA non-coding downstream 44908 19884508 ~ 19968165 (-)
G1672171 NA non-coding downstream 73373 19938149 ~ 19939700 (-)
G1672063 NA non-coding downstream 270120 19742569 ~ 19742953 (-)
G1672041 NA non-coding downstream 301311 19711504 ~ 19711762 (-)
G1672363 NA non-coding upstream 100617 20227204 ~ 20230281 (-)
G1672410 NA non-coding upstream 160832 20287419 ~ 20334652 (-)
G1672414 NA non-coding upstream 186680 20313267 ~ 20314911 (-)
G1672518 NA non-coding upstream 373816 20500403 ~ 20500608 (-)
G1671895 LOC107575789 other downstream 578032 19432139 ~ 19435041 (-)
G1671859 LOC106589268 other downstream 606142 19326814 ~ 19406931 (-)
LOC110499154 LOC106589262 other downstream 939886 19054126 ~ 19095333 (-)
G1671580 NA other downstream 1370189 18594053 ~ 18642884 (-)
G1672381 LOC106589294 other upstream 122872 20249459 ~ 20251165 (-)
G1672588 NA other upstream 494155 20620742 ~ 20670417 (-)
G1672649 dhx8 other upstream 602688 20729275 ~ 20730072 (-)
phf5a LOC102780084 other upstream 1462442 21589006 ~ 21596518 (-)
G1673740 LOC106589538 other upstream 1709746 21836333 ~ 21844793 (-)

Expression

LOC110499121(LOC106589293) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 3.
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LOC110499121(LOC106589293) Expression in each Bioproject

Bar chart with 19 bars.
LOC110499121(LOC106589293) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60.
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Co-expression Network