LOC110499120 (LOC106589294)


Basic Information

Item Value
gene id LOC110499120
gene name LOC106589294
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 20172414 ~ 20291141 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036955947.1
TGTACTAAACTGTTCAGTATTGGTCTTGGGGGATTTGTGTAATATTTTCAAACTTACACACCCGACACGTTCAGAAGGAGGAGCGTCGGGAGGCGGGTAGGATTCTATTCGTATGTATAAAGTCGAGACGAGAAATTCAAGGAAAGGGCTCTATGGATAGGCGTTAGTGTAACCATACCTTCTCGCCGAAAGCAACAAGTCTGTCTGGATGTGAATACATATTCTGGAATAACCATTACTTTTTCAAACCGGGTAGAGtaatgagataaaaaaaaattgcTATACGTTTTGCTATTGGTTTAGTTTGAATGTTTTGTGTCGTTTCCTAGCGTGCTTATTTGTTCAGCTTTACTCAAAATGAGTAAAACAAATAACAATGTATGACGCGTACTGCTGATTAGACGAACGAAGACCATGCTCATCGATCATTTAGCGCTTGAATCGGTGGACTGACGAGCTCACCATCGTTTACCTGGTGTGGCGGAGGAGCACTTCGCTTCAAAACAGTGAAGTTttcttttataaaaaaatatatagatattttccCCTGACCCGATATTTTTTGGGGGACCAAAATACAACATGGCAGAACACGAGAGTCTGGAGTTTGGAAAGGCTGACTTTGTTCTTCTGGACAGCGTTTCCTTGGAGGAATTCATGGCTAACCTAAAGCTCAGGTTTGAGAAGGGCCGTATCTACACCTACATCGGCGAGGTGGTGGTGTCGGTTAACCCTTACCGCGCCATGAACATCTACGGCCGAGACACCATCGAGCAGTACAAGGGCCGGGAGTTGTACGAGCGACCACCACATCTCTTCGCCATCGCAGACGCAGCCTACAAAGCCATGAAAAGGAGGAACAAGGACACCTGTATTGTCATCTCAgGGGAGAGTGGAGCCGGAAAGACGGAAGCCAGCAAATACATCATGCAATACATCGCTGCTATAACAAACCCCGGCCAAAGAGCTGAGGTCGAAAGggtgaaaAACATGCTGCTGAAATCCAACTGCGTCCTGGAGGCCTTTGGCAACGCCAAGACCAACCGCAACGACAACTCCAGTCGCTTCGGCAAGTACATGGACATCAACTTCGACTTCAAGGGAGATCCCATCGGGGGACACATCAACAACTACCTGCTGGAGAAGTCCAGAGTCATCTTCcagcaggagggggagagaagcttTCACTCATtctaccagATGGTTAAAGGGGGTTCTGAGTCCCTCTTGCGTTCCCTCCACGTCTCGAAGGACCCCACAGCCTACAGCTACATCAAAGTAGGAGGCCAGGTCAAGTCGTCGATTAACGACGGTGCTGATTTCAAAGCTGTGGCGGATGCCATGAAGGTGATCGGCTTCACACCAGATGAAATCCAGACTGTTTACAAGGTCCTGGCCACTATCCTGCACCTGGGGAACCTGACGTTTGGTGTGGATGGCGACACAACGCTGATTGAGAACTCCAAGGTGGTGGCGGTGATCGGGGTCCTGCTGGCCACTAAGGAGGAGAATGTGGGAAAGGCCCTGCTCTACCGCACCGTTGCCACCGGCCGTGACGTCATCGACAAGCAGCACACGACCCAGGAGGCCAGTTACGGCCGGGATGCCTTGGCCAAGGCTATGTACGAAAGAATGTTCTGTTGGATTGTGGGAAGGATCAATGATGTCATTGAAGTGAAGAACTATGACGCCAAAGTCCACGGGAAGAACACAGTCATCGGAGTGCTGGACATCTACGGCTTTGAGATATTTCAGAACAACAGctttGAGCAGTTCTGTATCAACTATTGCAACGAGAAGCTGCAGCAGCTCTTCATTCAGCTTGTGCTGAGGCAGGAACAGGAAGAGTACCAGCGCGAGGGAATCCCCTGGAAACACATTGACTACTTCAACAACCAGATCATTGTGGACCTGGTGGAGCTGCAACACAAGGGCATCTTCTCTGTGCTGGACGAGGCCTGTATGACCGTGGGCAAAGTCACCGACGAGGTCTTCTTACAGGGACTCAACAGCAAGCTGGCCAAGCACGCCCACTACACCAGCCGCAAGCTCTCCCCGACAGACAAGAGTTTGGAGTTTGACAGAGATTTCCGTATCCGGCACTATGCAGGGGATGTCGTGTACTCTGTGGTTGGCTTCATCGACAAGAACAAGGACACTCTCTTCCAGGACTTCAAAAGGCTACTGTACAACAGTTCCAACCCAGTGCTGAAGATGATGTGGCCGGAGGGCAAGCTGAGTATCACTGAGGTCACCAAACGACCCCTAACGGCCGCCACCCTCTTTAAGAACTCCATGATCGCATTGGTGGAGAACCTGGCATGCAAGGAGCCCTACTATGTGCGATGCATCAAGCCCAACGACGTCAAGTCGCCCCTGCTGTTCGAGTACGAGCGTTGTCGCCACCAGGTCGAGTACCTGGGCCTACTGGAGAACGTTCGTGTGCGCCGCGCCGGATTCGCCAACCGCCAGGAGTACCCCCGCTTCCTCCAGAGGTACAAGATGATCTCGGAGTTCACGTGGCCCAATCACGACCTTCCGTCGGACAAAGAGGCAGTGAAGAGGCTGGTGCAAGGCTGCGGCTTTGAGCACGACGTGGCCTACGGCAAGACCAAGGTGTTCGTCCGCACGCCGCGCACCCTCTTCTGCCTTGAGGAGCAGAGGGACGAAATGGTTGGGAGAATAGTCCTCTTCCTTCAGAAGGTATGGCGCGGTACCATAGCCAGGATGCGTTACAGGCGCATGCGAGCCGCCCTGATCATCCTGCGGGCCTACCAGCACTACAAGGTCAAGTCCTACATCAAGGACGTCAACCGCAAATTCAAGAACGTGCGCTCCATGAAGGACCATGGCAAGCACGTCAAGTGGCCCACGCCGCCCAAAGTCCTGCGGaagtttgaagaggcgctgcgGAGCatctacaacagGTGGTGGGCGTGGACTCTGATCAAAGACCTGACTCCAGAGGAGAAACTGCAGATCAGGGCCAAGGTGGCCACCCTGGAGGCCCTCAAGGGCCAGAGACCTGACCTGGGGCTGCAAAGGACCTGGGAGGGCAACTACCTGAAGCGAGACAGTCCTGACACAGCATCCTCCTTCACCTTGGTGTCCTGTGAGTTGCAGCGTAAGGACAAGTTCATGAGAGTGCTCTTCTCCTGTAACGTGCGCAAGATCAACCGTTTCCACAAGGCAGAGGACCGGGCCGTCCTCATCACAGACCGCCACCTATACAAGATGGACCCCCTCAAGCAGTACAAGCCCATGAAGAGCATCCCCCTCTACAATgtgACGGGGGTGAGTGTGTCCCCAGGTAAGGATCAGCTGGTGGTGTTCCACACTAAGGACAGCAGGGACCTAGTGGTGTGTCTACAGGGCATGGTGCCTGCTGGGGACAGCCGCATCGGAGAGCTGGTGGGCACCCTTCTCAGCCACTTCAAAagtgagaAGAGGAAGCTGCAGGTGAATATCGCCAGTCCCATCCAGTGCAGTATGAATGGCAGGAAGTGCACTGTCATTGTGGAGCCCAAGATCAACCAACCGCAGCCAGACTTCACCAAGAGCCGCTCCGGTTATATCCTGGCAGTGCCTGGAAACTAAAAGGGCCACTCGGGGGCCACTCGGTCTGTGACAAGGACAAGTGACGATGAGGTGTCAAATGAGGAATATGTGAATCATAACTCTGTTTGCATAGAGCTCATTTGTGAACTCAATGGCATGATATGATACATGGGAGGGTTGAACTCTCAGAATGAAAGCCATGCCAAATTTGTAACTCTGATTAGATATTTATTTGACGTAACTCaatgtttttcaataggacatgTAAGATGTTTAATACATACAAATGTGTTTAGTTAATTAGacagactcacacacatgcacaacatTAATTCACCAAAGAgtagatttttttcccctcactttTCGACATCAAGTTGAGTTCACATGTACAACCGAGCTGTTTTGTCGGGGCATCGATCATTATGTGTTACGCTAGCTTTGGTTAATCAAGATTAGTGTCACATTATCTGGCATTTCATTTGAGTAGAATATCTTGCTCAGAGATGTATATTCTCAcggctacagtgccttcagaaagtattcataccccttgacttattccacattatgttgtgttacagcctgaattcaaaaagtGATTAAATCGATTTGTTTTCTgacccatctacacaaaatacccccaTAATGGAAACAtttgaaatgttagcaaatgtattgaaaatgaaatacagaaataaaattttacataggtattcacacccctgaatcaaggcatgttagaatcacctttggcagtgattacagctgtgagttctTCTGGGTACgtctttaagagctttgcacacctagattgtacaatatttgcaaatGATTCTttcaaaaattcttcaagctctgtcaa

Function

NR:

description
unconventional myosin-Id

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016459 myosin complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0003774 motor activity molecular_function

KEGG:

id description
K10356 MYO1; myosin I

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036955947.1 True 4423 mRNA 0.50 22 20172414 20291141

Neighbor

gene id symbol gene type direction distance location
LOC110499123 LOC106589291 coding upstream 234093 19915972 ~ 19938321 (+)
LOC110498763 NA coding upstream 257153 19914464 ~ 19915261 (+)
LOC110498764 NA coding upstream 269045 19901163 ~ 19903369 (+)
LOC110499126 cbx1 coding upstream 286023 19878973 ~ 19886391 (+)
LOC110498765 LOC106589283 coding upstream 330325 19797750 ~ 19842089 (+)
LOC110499117 LOC106589296 coding downstream 17607 20308748 ~ 20314910 (+)
LOC110499115 LOC106589298 coding downstream 28343 20319484 ~ 20369276 (+)
LOC118942050 NA coding downstream 202184 20493325 ~ 20644068 (+)
LOC110499114 LOC105007436 coding downstream 363323 20654464 ~ 20688063 (+)
LOC110499112 LOC106589300 coding downstream 415258 20706399 ~ 20735339 (+)
G1670904 NA non-coding upstream 264684 19906806 ~ 19907730 (+)
G1670894 NA non-coding upstream 293725 19878400 ~ 19878689 (+)
G1670801 NA non-coding upstream 426760 19745433 ~ 19745654 (+)
LOC110499129 LOC106589284 non-coding upstream 441592 19728772 ~ 19731361 (+)
G1670783 NA non-coding upstream 451342 19720785 ~ 19721072 (+)
G1671244 NA non-coding downstream 221879 20513020 ~ 20513264 (+)
G1671247 NA non-coding downstream 226173 20517314 ~ 20517532 (+)
G1671251 NA non-coding downstream 230440 20521581 ~ 20521797 (+)
G1671252 NA non-coding downstream 230674 20521815 ~ 20522112 (+)
G1671259 NA non-coding downstream 238087 20529228 ~ 20529544 (+)
LOC110499153 LOC106589263 other upstream 1047178 19094882 ~ 19201695 (+)
G1670209 LOC105007702 other upstream 2051247 18051611 ~ 18132470 (+)
G1670125 LOC105007702 other upstream 2393040 17717036 ~ 17812707 (+)
G1672918 NA other downstream 798262 21089403 ~ 21089830 (+)
G1672973 NA other downstream 849384 21140525 ~ 21191078 (+)
G1673044 NA other downstream 1005231 21296372 ~ 21296854 (+)
G1673063 NA other downstream 1025657 21316798 ~ 21317412 (+)
G1673204 NA other downstream 1095188 21386329 ~ 21389778 (+)

Expression


Co-expression Network