LOC110499117 (LOC106589296)


Basic Information

Item Value
gene id LOC110499117
gene name LOC106589296
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 20308748 ~ 20314910 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576035.2
CTCGCTACACAACTGTGTAGGCCCTATACTAAATGCTGATGATTGGGCCTAAGTGAAATTGGCATCACATTCTGCTCCTACAATTTAATTGATTGGGCAGGCAGCTTTTGAATcggtagctggctagctaagatGGCGGCTGCGGCAGTGGTTGAGTTTCAGAGAGCTCAGTCTCTCATTAGCACGGATCGTAACGCCTCTATTGATATTCTGCATTCTATCGTGAGGAGAGATATCCAGGACAGTGATGAAGAAGCCGTTCGGGTTAAAGAACAAAGCATCTTGGAGCTGGGGTCACTCCTGGCCAAAACAGGACAGGCTGCAGAGTTGGGGGGTCTGCTGAAGTTTGTGCGGCCATTCCTCATCTCCATCAGTAAGGCTAAGGCAGCCCGGCTGGTCCGCTCCCTGCTTGACCTCTTCCTAGACATGGAGGCAGCTACAGGCCAGGAGGTGGAGCTGTGTCTGGAATGCATTGAGTGGGCCAAGGTGGAGAAGAGGACCTTCCTCAGACAGGCTCTTGAGgCCCGTCTGATCTCGCTCTATTTTGACACCAAAAGATACCAGGAGGCCTTGGCGCTTGGCACCCAGCTGCTCCATGAGCTGAAGAAGATGGATGACAAGGCGCTGCTGGTGGAGGTGCAGCTGCAGGAGAGCAAGACGTACCACGCGCTCAGCAACCTGCCCAAGGCCCGTGCCGCTCTCACCTCAGCCCGCACCACGGCCAACGGCATCTACTGTCCCCCCAAGCTGCAAGCCGCCCTGGACATGATGTCAGGGATTGTCCACGCAGCTTCGGAGAAAGACTGGAAGACTGCCTACTCCTACTTCTTTGAGGCCTTTGAGGGCTACGATTCCATCGACCACCCTAAAGCCATTACCGGTCTCAAATACATGCTGCTCTGCAAGATCATGCTCAGCCTACCAGAAGAGGTGCAATCCCTGATCAGCGGTAAACTGGCCCTGCGGCATGCGGGCCGACAGACAGATGCACTGAAATGTGTTGCACAAGCCAGCAAGAACAGATCATTAGCAGACTTTGAAAAGgCCCTTACAGAATACAAAGCAGAGTTGAGAGACGACCCCATCATCAGAACCCACCTGGCCACACTGTATGACAACCTGCTGGAAGGGAACCTTATCCGTGTCATCGAACCCTTCTCCAGAGTACAGATTGAACACATATCAGGTCTCATCAAACTGTCAAAGGCGGATGTCGAGAGGAAATTGTCACAGATGATCCTGGACAAGAAGTTTCATGGGATCTTGGACCAAGGTGAGGGTGTCTTGATCATATTTGATGAGCCACCAGTTGACAAGACTTATGGAGCGGCCTTGGAAACTATTCAGAACATGAGCAAAGTTGTGGACTCGCTTTACAACAAAGCGAAGAAGCTAACATAGAACAAATGTCGGGACCACAGCAGCACAgtggcgggtgtgtgtgtgtgaccagagtGTGTAACGTTTTAAGAAGGGGACATGGGAGAGCGACCAAAAAAGTCAACAGGATTCCCGGTTCCCCCTCAACGGACAATTCCATCACCCCTCTAATtcgcattattttattttttgatgTTCTTTCAGGATTCTGTTAATCTCATCGGCCACAGCAGGCCATCAGGGAATATTGTACAACCACAATAAAAGTTTAAGAAAGAGAAATACATGTTTATCTCCTGTAGAATAAAGATTGGGCTTACAAAGCCTACAGCTGACTCCGTTGCCACAGGAAAAGATGCAATATCGAGCGCCACCAACACTGCTTCTTTTACGGGCCCGGGACAAGGCTTTTGGTCAAGGTGGTCTCTTCATTTCTCTCTGTTCATATCTTTCTGAAGCAGATGGGGTTTTAGCTAGTTGAAGGTAGGTTAGAAAACATTGGGATAGCCCAGCTGTTAAATTTGCATGTTGACATTTCTcttgagtcttgtcctggaggaaGAACTGTGCAATTTCCCATTAGACGCGCCAGCTGAAAAGTCAAAGGGGGGCTATACTGTAGGTATTCATGAAAacagaaattagctttttggtcATAATTTAAGGTTATGCATTAGGGTAAGCATCGTGATTAGGTTTAAAGTCTGAATTGTGCGAGCTAGTGACCActcagagctgcctccagaacaagattcatgatgaCAAATGCTAACCTGTGTTAAATTTAGTCAAACTAGCTCCCTCTAACTCTTGCTGTGCTCATCATATTCATGCCAAGAGTCAGTCAATAACCCTTCATGAAATTTCAAATGGTTGTCAACATCACTTTATTTGGTTTGCATTTTGTTTTTAACTCAAATAAATCGGACACTTTTGTCCCCTTCATACTGTGAGTACATAGTGCAGAATGGATGCCATTTCACACAACTAGTGCCCTCTTTTGGCCCTCTATGCCTCAACGTTTGGCTACATTTATATAATTTAGGGGTGCAGAAGTGGCGATGTATTGATTGCCTCTGAGCGTCTGTCTGATCCCGAGTGACCGATTAATCCATTGTTAGATCCTGGTATGCTAATAACCAAACAACAATTTGTatggtttagatttttttttcatttgtcattttcagaaataaacatttttgtatttttaaggATTTCTGTCTGCCTCTTGGAAAATATCCCTGACCCTGGCAGTTCGATTGGGCCAGTTTAGCCCAATGATGTGCTCTTGTGCTAAGGCCATTTGGGTTGGGTGTCCCTTGTTGGACAAGTGACTTCAGTTGATTTGGACGCCAGTGTAGAAATAAAGGTCTAATAGATGAAGGCCTGCGAAGTAAATGTGTGCTGGGACTAGCAGCTTCAACTGGGTGGGGAAGAATGAATCTCTCCAGTTGCTGACTGGGTGGAAGTAAGGAAGAAGGTCAAAGGGAAGAGCTGTGTAGGAAAAATCCCTGTCAAGTCAACTCTGGGATTGCCATGTTGTGAACTGCAATTGgagggttatgaatactttggCATTGTGTATTGTCTATTCTCCTGCTGGGCAAATATTCCTGTGTTGGAAAATGGCCTTGTTCCATCAAAGGGCATTAAACCACAATTTCAATGA

Function

NR:

description
PREDICTED: 26S proteasome non-ATPase regulatory subunit 11B

GO:

id name namespace
GO:0000502 proteasome complex cellular_component

KEGG:

id description
K03036 PSMD11, RPN6; 26S proteasome regulatory subunit N6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576035.2 True 3052 mRNA 0.47 14 20308748 20314910

Neighbor

gene id symbol gene type direction distance location
LOC110499120 LOC106589294 coding upstream 17607 20172414 ~ 20291141 (+)
LOC110499123 LOC106589291 coding upstream 370427 19915972 ~ 19938321 (+)
LOC110498763 NA coding upstream 393487 19914464 ~ 19915261 (+)
LOC110498764 NA coding upstream 405379 19901163 ~ 19903369 (+)
LOC110499126 cbx1 coding upstream 422357 19878973 ~ 19886391 (+)
LOC110499115 LOC106589298 coding downstream 4574 20319484 ~ 20369276 (+)
LOC118942050 NA coding downstream 178415 20493325 ~ 20644068 (+)
LOC110499114 LOC105007436 coding downstream 339554 20654464 ~ 20688063 (+)
LOC110499112 LOC106589300 coding downstream 391489 20706399 ~ 20735339 (+)
LOC110499111 LOC106589301 coding downstream 420522 20735432 ~ 20764082 (+)
G1670904 NA non-coding upstream 401018 19906806 ~ 19907730 (+)
G1670894 NA non-coding upstream 430059 19878400 ~ 19878689 (+)
G1670801 NA non-coding upstream 563094 19745433 ~ 19745654 (+)
LOC110499129 LOC106589284 non-coding upstream 577926 19728772 ~ 19731361 (+)
G1670783 NA non-coding upstream 587676 19720785 ~ 19721072 (+)
G1671244 NA non-coding downstream 198110 20513020 ~ 20513264 (+)
G1671247 NA non-coding downstream 202404 20517314 ~ 20517532 (+)
G1671251 NA non-coding downstream 206671 20521581 ~ 20521797 (+)
G1671252 NA non-coding downstream 206905 20521815 ~ 20522112 (+)
G1671259 NA non-coding downstream 214318 20529228 ~ 20529544 (+)
G1671091 NA other upstream 80580 20227795 ~ 20228168 (+)
LOC110499153 LOC106589263 other upstream 1183512 19094882 ~ 19201695 (+)
G1670209 LOC105007702 other upstream 2187581 18051611 ~ 18132470 (+)
G1670125 LOC105007702 other upstream 2529374 17717036 ~ 17812707 (+)
G1672918 NA other downstream 774493 21089403 ~ 21089830 (+)
G1672973 NA other downstream 825615 21140525 ~ 21191078 (+)
G1673044 NA other downstream 981462 21296372 ~ 21296854 (+)
G1673063 NA other downstream 1001888 21316798 ~ 21317412 (+)
G1673204 NA other downstream 1071419 21386329 ~ 21389778 (+)

Expression


Co-expression Network