LOC110499115 (LOC106589298)


Basic Information

Item Value
gene id LOC110499115
gene name LOC106589298
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 20319484 ~ 20369276 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036955956.1
TGATGACATCACTTTGTAAGTCACGTCGATCCCGCCCACTTAGCCTGTGTAGCATTAGTGGAGTTCAACGATTGTGCTGTCAGCAGTGCTGGGAACATTTACGCTGAATTGTATTTGAAAAACGACAACAAACAGCAATATGGCCGGCCGGACTATGCAAGCGGCGCGATGCCCAACAGACGAACTGTCACTTACCAACTGCGCAGTCGTGAGTGAGAAGGACCCACAGTTTGAACATCACGTGACCGTGAGAACCACGCCGACCCACAAGTTTGTGTTCACAGTGAAGACCCACCAGAGTGTGGTCCCGGGGACCATCGCCTTCAGTCTGCCACAGAGAAAATGGGCAGGCCTCTCCATTGGTCAGGATGTGGAAGTGACCAACTACAACTTTGACAAGTCCAAGCAGTGTGTGGGCACCATGATGGTGGAGATTGATTTCCTGCAGAAGAAGAGTGTGGACAGCAGCCAATACGACTCAGACAAGATGGCTGCAGAGTTCATCCAGCACTTCAACAGCCAGGCCTTCAGTGCGGGCCAGCAGCTGGTGTTTAGTTTCTGTGACAAGCTGTTTGGCCTGCTGATAAAAGACATTGAAGCCATGGACCCAAGCATCCTCAAGGGAGAAGCAGGCTCTGGGAAGAAGCACAAGATTGACATTGGCTTGTTGCTGGGAAACAGCCAGGTGGTTTTTGAGAAGGCCGAGAGCTCTTCTCTTACCCTCATTGGGAAGTCTAAGACCAGAGAGTCTCGCCAGTCTATCATCAACCCAGACTGGAACTTTGAGCGCATGGGCATCGGTGGCCTGGACAAAGAGTTCTCCGACATCTTCCGTAGGGCCTTCGCCTCCCGAGTCTTCCCTCCAGACATTGTGGAGCAGATGGGTTGTAAGCATGTGAAGGGCATCTTGTTGTTCGGGCCTCCTGGCTGCGGTAAGACTCTGATGGCCAGGCAGATTGGGAAGATGCTGAACGCCCGAGAGCCCAAGGTGGTCAACGGCCCCGAGATCCTCAACAAGTACGTGGGAGAGTCCGAGGCCAACATCAGGAAGCTGTTCGCCGACGCAGAGGACGAGCAAAAGAGGCTGGGCGCCAACAGTGGGCTGCACATCATCATCTTTGACGAGATTGACGCCATCTGTAAGCAGCGTGGCAGCATGGCGGGCAGCACGGGCGTCCACGACACAGTGGTCAACCAACTGCTGTCCAAGATAGACGGAGTGGAGCAGCTCAACAATATCTTGGtcatagGAATGACCAACAGGCCTGACCTGATAGACGAGGCCTTGTTGAGACCAGGCAGGTTGGAGGTCAAAATGGAGATCGGTTTGCCTGATGAGAAGGGGCGTGTCCAGATCCTCAACATCCACACGGCCAAGATGCGTCAGTTCCACCTGCTGGGCAGCGACGTGGACGTCAGCGAGCTGGCCGCCGAGACCAAGAACTACAGTGGAGCTGAGCTGGAGGGGCTGGTCAGAGCTGCCCAGTCCACCGCCATGAACCGACACATCAAGGCCAGTGCCACGGTGGAGGTGGACCTAGAGAAGGCTGAGAATCTGCAGGTCCACAGAGACGACTTCCTGGCCTCGCTGGACAACGACATCAAACCTGCATTTGGTACCAACTCCGAGGACTATGCCAGCTACATCATGAACGGCATCATTAAGTGGGGCGACCCGGTGACAGCCGTGCTGGATGACGGGGAGCTGCTGGTGCAGCAGACCAAGAACAGCGACCGCACACCACTGGTGTCTGTGCTACTGGAAGGTCCCCCCAACAGTGGAAagacggctctggcagctaaGATCTCAGAGGAATCCCAGTTCCCCTTTATAAAGATCTGCTCTCCAGACAAGATGATTGGCCACTCTGAGATCGCTAAGTGCCAGGCCATCAAGAAGATATTTGAAGATGCCTATAAGTCCCAGCTGAGCTGTGTAGTGGTAGATGACATTGAGCGCTTGCTGGACTATGTCCCGATTGGCCCTCGTTTCTCAAACCTGGTCCTTCAAGCTCTGCTGGTCCTCCTCAAGAAACCCCCTCCCAAGgGCCGTAAGCTGCTGATCATCGGCACCACCAGCAGGAAGGACGTGCTGCAGGAGATGGAGATGCTGGACGCCTTCAGTACCACCATCCACATCCCCAACATCTCTAGAGGAGAGCAGCTGGTCGAGGCCCTGGAGATGCTAGGTAGTTTCCAGGAGAAGGAGCGGGCAGACATCGCCAAGGCGGTGAAGGGCCAGGGGGTGTGGATCGGCATCAAGAAGCTGACGATGCTTATCGAAATGGCCGTGCAGaTGGATCCTGAATACAGAGTTAGTAAGTTCCTTACCCTGCTGAGAGAACAGGGAGCGTTGGGTTCTATACCCATCTAAGTCCATGGTGGAGCTGCATTGCCCAGCAGTTAGCTGCCTCTCCCATGGCTGAGGAGCGGAAGCCTGGGTGCTGTCCATCCCCAACGCTCCCCGTGTAATCTCTGTACCTCGTGTTTCCATGGCAACACCGAATGACCCAGCCTCTTCCTCATCAACAcgacctctctgtgtgtgtacatttaaGTGAGAATTAAGCACTTGTTCTGTGTACAATTTTTATTTATGattcaaatggcactctattccctatatagtgcactgctttttgaccagagctctataggtcctggtcaaaacaAGAGcactgaatagggtgccattagagaCGCATCCAAAGTGTTATGATCTGTGCTGCTAGCACTCCGTGGGATTTTATGTATAAAAAGCAAAAATAAGGTGGTTGTATGTTTATAACTAAGTAGGTATTAGATGAGGAAAGTGTAAGCACAAACATGTATACGATGACCTATTGTGTGTTTGATATTACGCACGTAGATCTCTAATCATTCCAGGAAATGATGGTTCCAAGCCTTTACCCTTAGCTCTGCTCACTTTTtggtttttattatgttttcatttTTGACTTTCTTTGTTTTATGAATAATTGTCATGGATACTTAATCATGTTACAAAAAATATTGATTAGATAGTAACTGGAAAAACGGATCCATTTTCAGACCAAGACCGTTTTAGaagggaacccccccccccccccaaccacgcCTGATATACCTGTTGAAATTAATTCTGTATCATGCTGTTCTCTATGAATGACCTGTGCCTTTGCCTGCTGGTGGATGGCCGTGCTGTTTCTCTGTGGACAAGAGGCGAGGGGGTGATAAGTGGAGGTATACTAGGTTTAAAGCATATCGTTGTTACTCTCTGCCGTTACTGGTGGTGCTCTCTGTGTTTCTGCGGTGTTGTGAGCTGTCGTTCAGCCTGTGTAGCTAACAGAAATAACATCCTATGCCAGAAAGTGTCTGCCTTATAGAACAGGAGAGATGTGGTTCTTTTTCAGGATGGCACTACCCTCTTTTGACTGTTATGAACCCATGGGCCTTATCTCTACCTCCTAGTCCTGATACATCAGAGTCTCTGTACACTGTTCTGTATAAAGGCTATATGCCCGACATTATAACTCGCCTCCCCCCGTCCCCCATCCGTGTGCATGCCTAACACACTGCCATTTATTTACAGAAGTACACTATGCAGGTTTGTTTCAGATAAACACAATTCAAGTGTAAATGTATGGATATATCAACCAGATGTATACATTATTTGCAGTGACCAGTGTGCTTTTTTTTCTCTAAATCTATTTGTAATGAAGTCTTGAACGCTGTAAAACTTATGACAAGTTGCAATTGTATTATCGCAATAAAATTGGACACATGAA

Function

NR:

description
vesicle-fusing ATPase

GO:

id name namespace
GO:0048794 swim bladder development biological_process
GO:0021854 hypothalamus development biological_process
GO:0045162 clustering of voltage-gated sodium channels biological_process
GO:0048592 eye morphogenesis biological_process
GO:0051875 pigment granule localization biological_process
GO:0014044 Schwann cell development biological_process
GO:0048914 myelination of anterior lateral line nerve axons biological_process
GO:0048929 efferent axon development in posterior lateral line nerve biological_process
GO:0048932 myelination of posterior lateral line nerve axons biological_process
GO:0048933 afferent axon development in posterior lateral line nerve biological_process
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG:

id description
K06027 NSF, SEC18; vesicle-fusing ATPase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036955956.1 True 3767 mRNA 0.50 22 20319484 20369276

Neighbor

gene id symbol gene type direction distance location
LOC110499117 LOC106589296 coding upstream 4574 20308748 ~ 20314910 (+)
LOC110499120 LOC106589294 coding upstream 28343 20172414 ~ 20291141 (+)
LOC110499123 LOC106589291 coding upstream 381163 19915972 ~ 19938321 (+)
LOC110498763 NA coding upstream 404223 19914464 ~ 19915261 (+)
LOC110498764 NA coding upstream 416115 19901163 ~ 19903369 (+)
LOC118942050 NA coding downstream 124049 20493325 ~ 20644068 (+)
LOC110499114 LOC105007436 coding downstream 285188 20654464 ~ 20688063 (+)
LOC110499112 LOC106589300 coding downstream 337123 20706399 ~ 20735339 (+)
LOC110499111 LOC106589301 coding downstream 366156 20735432 ~ 20764082 (+)
LOC110499108 LOC106578253 coding downstream 633375 21002651 ~ 21040111 (+)
G1670904 NA non-coding upstream 411754 19906806 ~ 19907730 (+)
G1670894 NA non-coding upstream 440795 19878400 ~ 19878689 (+)
G1670801 NA non-coding upstream 573830 19745433 ~ 19745654 (+)
LOC110499129 LOC106589284 non-coding upstream 588662 19728772 ~ 19731361 (+)
G1670783 NA non-coding upstream 598412 19720785 ~ 19721072 (+)
G1671244 NA non-coding downstream 143744 20513020 ~ 20513264 (+)
G1671247 NA non-coding downstream 148038 20517314 ~ 20517532 (+)
G1671251 NA non-coding downstream 152305 20521581 ~ 20521797 (+)
G1671252 NA non-coding downstream 152539 20521815 ~ 20522112 (+)
G1671259 NA non-coding downstream 159952 20529228 ~ 20529544 (+)
G1671091 NA other upstream 91316 20227795 ~ 20228168 (+)
LOC110499153 LOC106589263 other upstream 1194248 19094882 ~ 19201695 (+)
G1670209 LOC105007702 other upstream 2198317 18051611 ~ 18132470 (+)
G1670126 NA other upstream 2545782 17767481 ~ 17773702 (+)
G1670129 NA other upstream 2558672 17752294 ~ 17760812 (+)
G1672918 NA other downstream 720127 21089403 ~ 21089830 (+)
G1672973 NA other downstream 771249 21140525 ~ 21191078 (+)
G1673044 NA other downstream 927096 21296372 ~ 21296854 (+)
G1673063 NA other downstream 947522 21316798 ~ 21317412 (+)
G1673204 NA other downstream 1017053 21386329 ~ 21389778 (+)

Expression


Co-expression Network