LOC110499116 (wnt3)


Basic Information

Item Value
gene id LOC110499116
gene name wnt3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 20368996 ~ 20407349 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576034.2
CACTTCGGGGAGTGCTTGCTTTGAATTATCAGagatgaaatagattgaataagaAGAACTCTACCTTTTTGCTCTGTCCCTCCCTTACACCTCTTCTcattttccctccctctcaccctccctctttctctctcctttctttcttttccaCATTACCAGGGGGTGGTGTGTGATTGACGGATGGGAACGAATAATTTTTCTCGTAACCTAAGGCCATCCTCTGTGATTGGCTTGCCAGCTGACATCTCCAAACCTCGCTCGTCTTCTTTTTTCCCCCCTTTAATATTGGGCCTGTGGATGAGGCATCCTGAGGGAGAGAAAAAAGTGGAGAGAAAAACATATCTACCTTAGGAAAGAACctcatagagagggagggaaggagaggacgggtaggagcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtttgtatatgtgtgagagagagagagacacttacTCTCCTAACTACTAGGAGACAGACACATTTTCCTGTCCAGACTCAAAGAAGGGGGAAAACAGgaggaagttttttttttttttgcttcaatTTGATTTCAATTTTCCCGTCCCTCAACAATCAAGCTTTTCCTAAAGCTTCTCCTCCAGGAAGTCTGTTCTTCATTCCCAATTGGAAATTCTATGTATTGATCCATTTCCACTCTACCACCACAAGGCATACCTCATGGATTTGTTCCTGATTGGAtatatgatgtgtgtgtggttgtccaGCTGGCGGGTGCTTGGAGGCTATCCCATCTGGTGgTCCCTAGCCCTGGGGCAGCAGTACTCGTCTCTGGGCTCCCAACCCATTCTGTGCGGCTCCATCCCTGGCCTGGTGCCCAAGCAGCTGCGCTTCTGTCGCAACTACATCGAGATCATGCCCAGCGTGGCCGAGGGCGTGAAGCTGGGCATCCAGGAGTGCCAGCACCAGTTCAGGGGCCGGCGTTGGAACTGTACCACCATCAAGGACAACCTAGCCATCTTTGGCCCTGTGCTGGACAAGGCGACCAGAGAGTCGGCGTTCGTCCACGCCGTCGCCTCAGCGGGGGTGGCGTTTGCTGTGACTCGGTCCTGCGCCGAGGGCACGTCCACCATGTGTGGCTGTGACTCCCACCACAAGGGTCCCCCGGGGGAGGGCTGGAAGTGGGGCGGCTGCAGCGAGGACGCCGAGTTCGGGGTGCTGGTGTCCAGAGAGTTTGCCGATGCCAGAGAGAACCGCCCCGACGCGCGCTCGGCTATGAATCGGCACAACAACGAAGCAGGACGCACGaCCATCCTGGACCACATGCACCTGCGCTGCAAATGCCATGGCCTGTCGGGCAGCTGCGAGGTGAAAACATGCTGGTGGGCGCAGCCCGACTTCCGCATGCTGGGCGACTACCTGAAGGACAAGTACGACAGCGCCTCGGAGATGGTGGTGGAGAAGCACCGCGAGTCGCGCGGCTGGGTGGAGACGCTGCGCGCCAAGTACGCCTTCTTCAAGCACCCCACGGAGCGCGACCTGGTCTACTACGAGGGCTCGCCCAACTTCTGCGAGCCCAACCCGGAGACGGGCTCATTCGGCACGCGCGACCGCGCCTGCAATGTTTCCTCGCACGGCATCGAGGGCTGCGACCTGCTCTGCTGCGGCAGGGGCCACAACACTCGGACTGAGAAGCGCAAGGAGAAGTGCCACTGCATCTTCCACTGGTGCTGCTACGTCAGCTGCCAGGAGTGTGTGCGCGTCTACGACGTGCACACGTGCAAGTGAAAGCCTTGTGCGCTCGCTCGGACAGAATGATGGACCACAGCGGCCATCGCAGTCACACTGCAGTCATCGCATGCATACAGACTTAAGTACAGACAGACACCAATGGGGAGTGGCATTTCTGGGGAGTGGCATTTCTGTACTAGAACTCCATACTCCTTGTGATAAAAATGTCCCTCATATCCTTCTTCCAAGCCCTGCATCCTCCATATGGGAAAGCCCATTTCCATTGGAACAAGCTCAGTCAGTTTGACCAGTTCACATTCCTGCAGCATTGGGCCATGACCCCTTCTTTATTTATTGCTATCGAATGGACATCCTTTTTAACTAACACCTGATTTCACCAGTCAATCACCTGGCTGGTGGACTATTGTGAACGAAAGCAGTTCCCCAACGTCACTCGTCAATCCAAACCGTACTGAACACACGGCGGCAGCCCAGGAACCTACCACTTTTAACTACTGAGCGGGCTGTTACTGGACCCTGCCCTTCTAAACTAAGCTACTGAGCGGATGAAATCTCCACTTTCTCAACCCCTGTACTGGTACTGTACTGCAGCAGTCACCTAGATGAGACGCCTGGAAGATGTGCTAGAGCGTGATTTTATAGCCCCACATTTCTGAAATATTAGCAATGGGCCGGGACTGGAGGTGGTATGCAGGAAGGGACATGTGCACGAACCAAACATGCTTGTTTCCACTCACGGACATTTCTGCACATGTATGCACTATTCAGCTGTACACGAACTGTCTGGAGGAGGTGAAACTTTAGCAATTGTTATTTATGAGAGCAAATGCATTCTTCTTGTTGATCTCAAGATCAGATAcacttttctggaatttccctTTACAGTCCAGGAAATTATAACGATATGTCATAGAGAAGAAAACGTTCACGACAAACAACAGGTAGAGGGTTCAGGTTTAAGAGGTCGTACGTCATTGGATTAACATTGAATTCATGGATCACCAGGTCATTTTGCACTCGCAATAGGCCCAATGCTAATGAATAATTATACTAATAGCGGGTCATACTACGACAATGAGATTATAATTGTATCGAACACTCGGACGGTCCATTTCATTAGGTTCCTGATAGTGCTGTGAGGTCCTTGTTCTAAGCGAAACTCTGCTCACCAGTGAAAGGTGATGACAAGTGGAGAAAGCAGAAAGTGTCAAGTCATCAATAACCCCCTTTCCTCATCTCCTTCCCTTAATTGCCAGTGATGTGAAACGTCTTGACAATAGAAGCAATATGTTGGAAACTTGTTCAGAGACGACGTGTCTGTGGGAGACAAATGGAGGAGACGAGGGTAAGAAGGTTATGTAAGACTATTGGGATACAGCTGATGTGCTGACTGCCAGTGACAGGGGTGTAAGGGTTAGGGATGGCAGGCACGTGGGATAGAGGTTTCCACACAACATGTTCTGACAGTGCTACGTGCTTCCTATTAATTATATTTAACAAAAATACAATTTACCCCAGGTAGTATAGGCTCCTCTCTGTGACATACGGCAGTTTAGCAACTGCATCACCCTCTAAAAAGCCCTCCCTACCAGGGCACTTTGTCGTTCCTTCCTTTCCTGCCCGCTATATCCAAAGTTTTGTACAAAGGTTTTAAAGTTAATAATTCCCTTTTTATTTTATAATctgaaaatgttatgtttttataAATATTATTTATTATACAATGTGTATATATCTGAACTAAGATTATATATTTGAAGAACAAATTACTGTCTCATGCTTTTGCTTCTTAGCCAGAGGTACTTTTCTAATCATTTCAGTTTGTAAGCATCGATTCCTCTACATTTCCTTACCAAATCATGTATATAGACATTGCACATAACACTTTTGAACTCATTTTTAAATGGCAAGCTGCGATGGTGTTCCAAACTGTGATAGACAGTTATCCATGCTTAATAAATAGTCCGATCCTCACTATAACTCAAAATAATGTCTCAATCTGCTCTAGAACTCTGTGAAACGTCTGCAATTTGTCTCGATCAAGTCCATTTCTCCCTGATAAAATCTATAGGTGAATGACAAGTGCATCTGCATCAatcaataatacacacacacacacacacacacacacttagaaaaGTACTGTACGAAATGTTCATGTGTCCAATTTTATTGCGATAATACAATTGCAACTTGTCATAAGTTTTACAGCGTTCAAGACTTCATTACAAATAGATTTAGAGAAAAAAAAGCACACTGGTCACTGCAAATAATGTATACATCTGGTTGATATATCCATACATTTACACTTGAATTGTGTTTATCTGAAACAAACCTGCATAGTGTACTTCTGTAAATAAATGGCAGTGTGTTAGGCATGCACACGGATGGGGGACGGGGGGAGGCGAGTTATAATGTCGGGCATATAGCCTTTA

Function

symbol description
wnt3 Predicted to enable cytokine activity and frizzled binding activity. Acts upstream of or within cloaca development and thalamus development. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including basal plate midbrain region; brain; midbrain hindbrain boundary neural tube; posterior neural tube; and presumptive diencephalon. Human ortholog(s) of this gene implicated in tetraamelia syndrome 1. Orthologous to human WNT3 (Wnt family member 3).

NR:

description
PREDICTED: proto-oncogene Wnt-3

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005102 signaling receptor binding molecular_function

KEGG:

id description
K00312 WNT3; wingless-type MMTV integration site family, member 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576034.2 True 4158 mRNA 0.48 4 20368996 20407349
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Neighbor

gene id symbol gene type direction distance location
LOC110499118 LOC106589297 coding downstream 60222 20297544 ~ 20308774 (-)
trnaa-ugc-145 NA coding downstream 202291 20166636 ~ 20166705 (-)
LOC110499121 LOC106589293 coding downstream 242409 20013073 ~ 20126587 (-)
LOC110499122 LOC106589292 coding downstream 407640 19941466 ~ 19961356 (-)
LOC110499124 LOC106589290 coding downstream 455126 19907335 ~ 19913870 (-)
LOC110499110 LOC106589303 coding upstream 358774 20766123 ~ 20807510 (-)
LOC110499109 LOC106589309 coding upstream 455001 20862350 ~ 20872069 (-)
LOC118941997 LOC106589179 coding upstream 547850 20955199 ~ 20957806 (-)
LOC118942009 NA coding upstream 570874 20978223 ~ 20979539 (-)
LOC110499105 LOC106589523 coding upstream 784262 21191611 ~ 21214252 (-)
G1672410 NA non-coding downstream 34344 20287419 ~ 20334652 (-)
G1672414 NA non-coding downstream 54085 20313267 ~ 20314911 (-)
G1672363 NA non-coding downstream 138715 20227204 ~ 20230281 (-)
G1672294 NA non-coding downstream 239984 20114541 ~ 20129012 (-)
G1672518 NA non-coding upstream 93054 20500403 ~ 20500608 (-)
G1672519 NA non-coding upstream 94419 20501768 ~ 20501975 (-)
G1672522 NA non-coding upstream 96907 20504256 ~ 20504466 (-)
G1672533 NA non-coding upstream 104893 20512242 ~ 20512962 (-)
G1672534 NA non-coding upstream 106205 20513554 ~ 20513796 (-)
G1672381 LOC106589294 other downstream 117831 20249459 ~ 20251165 (-)
G1671895 LOC107575789 other downstream 933955 19432139 ~ 19435041 (-)
G1671859 LOC106589268 other downstream 962065 19326814 ~ 19406931 (-)
LOC110499154 LOC106589262 other downstream 1295809 19054126 ~ 19095333 (-)
G1671584 NA other downstream 1736909 18631507 ~ 18632087 (-)
G1672588 NA other upstream 213393 20620742 ~ 20670417 (-)
G1672649 dhx8 other upstream 321926 20729275 ~ 20730072 (-)
phf5a LOC102780084 other upstream 1181680 21589006 ~ 21596518 (-)
G1673740 LOC106589538 other upstream 1428984 21836333 ~ 21844793 (-)
G1674299 NA other upstream 1924001 22331350 ~ 22331806 (-)

Expression

LOC110499116(wnt3) Expression in all Baseline Samples

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LOC110499116(wnt3) Expression in each Bioproject

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LOC110499116(wnt3) Expression in each Sample
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Co-expression Network