LOC118942050


Basic Information

Item Value
gene id LOC118942050
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 20493325 ~ 20644068 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037956.1
GTATTTAATTGTATGTTTGGAAAATGTTATGTTGTATTATAGAGAAAAAGCTCCTGATCCTCAACTCACCTCATCTTCAGGTAACACAAGGTAGAGGTCTTTCTAATTCCGAAGGGAGGAGGTGGAGCGCATCTTCAGCAGACCTTTATAAGGACGAGGATAACCCGCCGCGCCAGATACGTGTGGATGCCAAGAGATGCTCAACATCTCAGAAACTGTATTCATTTCTATTCAGACTGATGGCCTCATATTCAAAACAAGTATTGCTATTTTTTTATTGTCGTTTTTATCAAAGAAGGCAGATGTGTTTGTAATTTACTGTGGTATTCCTGTAGAGAGCGGTAGATAGTTTTCTAAAAAATGGTTTTATGCTCACCCCATACTGTATACATAAGCGGAGGGAAGAGAAATCCTAGCAGTTCTCTTGATTCCATTTCACTGTCGAAACGATACTGGAGCACTTTTTTTGCACATACCTAAAGGAAAATCCCAAATAACGAGCACCTAGCGACTTTGTTTAAGTGCAATAGAGGAACTGTACGAGACAGTACGTTGCGGAGGGATTTAGAAATAAAAACCCAGTGTTGTGCAGTTGCATTCCCTACCACTTCACTTGCACTGGATACGGGGAGGCTTTGACTTTTTTCATCCCAGTTTCTGTCTCAAAACAACCGTATTCTCGTCTAAATCCGCTGAAGAACCTGACGGgtagaccatctatctgatgctgtctggtccaaaccaAGTATGACAGTGTTTACCCCGGCTAGCATTGACAGCAAGAGAAGGCAGCGAGCATCTGGGCTCCGTCGAGCTCAACTGTGAAGGGTCTTGCCCCATCAACAAGAAaagggcttccccagtgattttacccatgcacAGTTACTGCAGGCCCTCCTATACCCAGGTGACAGACTACGGGTTCAGGGCAGAAGCCATCATCCCACAGGACATACTAAAGGCCTGGGGAAGTCATTAGCCACCACATACAACAGGACACTGATCTTGTACGGTCCAGTCCATTCGTCAGTCCCAGGGCCAGCACAGGGGGGTCGCTCCGGAGGCCAGAGCCCATCCGGACCGGGACCCTGTGATGTCGCACTGACTGACCCCCCTATCTGCGAATGACCAGCAAGCATCTGAGGGTGGGGCCCGCCTCAGTCTCGCATGATTGGCTGCTGGATGGAATTAAGGTGAATGGAACACATGCCCAAGGAGCAGGACCCTAACCTatcagagggagaagagaaactGTGAGTCCCGCCCCCTACTTCCTAGGCTCAACCCTACAGGCTATGACCCTGCCGCTAACATCACGCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037956.1 True 1320 mRNA 0.48 4 20493325 20644068

Neighbor

gene id symbol gene type direction distance location
LOC110499115 LOC106589298 coding upstream 124049 20319484 ~ 20369276 (+)
LOC110499117 LOC106589296 coding upstream 178415 20308748 ~ 20314910 (+)
LOC110499120 LOC106589294 coding upstream 202184 20172414 ~ 20291141 (+)
LOC110499123 LOC106589291 coding upstream 555004 19915972 ~ 19938321 (+)
LOC110498763 NA coding upstream 578064 19914464 ~ 19915261 (+)
LOC110499114 LOC105007436 coding downstream 10396 20654464 ~ 20688063 (+)
LOC110499112 LOC106589300 coding downstream 62331 20706399 ~ 20735339 (+)
LOC110499111 LOC106589301 coding downstream 91364 20735432 ~ 20764082 (+)
LOC110499108 LOC106578253 coding downstream 358583 21002651 ~ 21040111 (+)
LOC110499107 LOC106578254 coding downstream 510467 21154535 ~ 21168654 (+)
G1670904 NA non-coding upstream 585595 19906806 ~ 19907730 (+)
G1670894 NA non-coding upstream 614636 19878400 ~ 19878689 (+)
G1670801 NA non-coding upstream 747671 19745433 ~ 19745654 (+)
LOC110499129 LOC106589284 non-coding upstream 762503 19728772 ~ 19731361 (+)
G1670783 NA non-coding upstream 772253 19720785 ~ 19721072 (+)
G1671235 NA non-coding downstream 54099 20698167 ~ 20699165 (+)
G1671391 NA non-coding downstream 112423 20756491 ~ 20770444 (+)
G1672761 NA non-coding downstream 256705 20900773 ~ 20901240 (+)
G1672762 NA non-coding downstream 257264 20901332 ~ 20901794 (+)
G1671091 NA other upstream 265157 20227795 ~ 20228168 (+)
LOC110499153 LOC106589263 other upstream 1368089 19094882 ~ 19201695 (+)
G1670209 LOC105007702 other upstream 2372158 18051611 ~ 18132470 (+)
G1670126 NA other upstream 2719623 17767481 ~ 17773702 (+)
G1670129 NA other upstream 2732513 17752294 ~ 17760812 (+)
G1672918 NA other downstream 445335 21089403 ~ 21089830 (+)
G1672973 NA other downstream 496457 21140525 ~ 21191078 (+)
G1673044 NA other downstream 652304 21296372 ~ 21296854 (+)
G1673063 NA other downstream 672730 21316798 ~ 21317412 (+)
G1673204 NA other downstream 742261 21386329 ~ 21389778 (+)

Expression


Co-expression Network