LOC110499114 (LOC105007436)


Basic Information

Item Value
gene id LOC110499114
gene name LOC105007436
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 20654464 ~ 20688063 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576029.2
TGCAGGGATtcatacagcgagagagagactgagagagtgaaaaagagaggcagagtgggtgtgtgtgctaGCGAGCCAAGGTCTTTTCAGAGCTAAACATAGCAAGGTTGGCAGCAGTGTCAGTGTACAGTAGATGTGACTCGTATTTGCCAGCGCTGTTTGAGGCCAGCAACTCTTCTCGCCATGCATATTCTACACTCGCACTGCGTCATAAGgTGGATCGATGGCCCGAAAAGGAAAAGAAAGAACAGTTCATGTTCTGTGAAGAGCATGTCTGAAATGAATGGATACGGACAGACTGGGTCAGAGAGTACAGGGTACATCCCCAGCTACCTGGAGAAGGATGAACCGTGCGTGGTGTGTGGAGACAAGGCCACTGGCTACCACTACCGCTGCATCACCTGTGAGGGCTGCAAGggTTTCTTTCGGCGGACAATTCAGAAGAACCTCCACCCCGCCTACTCCTGTAAGTACGATGGCTGCTGCATCATCGACAAGATCACCCGCAACCAGTGCCAGCTGTGCCGCTTCAAGAAGTGCATCGCAGTGGGCATGGCCATGGACCtcgtcCTGGATGACTCTAAGCGGGTGGCCAAGCGGCGTCTGATCGAGGAGAAccgggagaagaggaagaaggaggagatGGTGAAGACTCTGCAGAACCGGCCGGAGCCCACCGGCTCAGAGTGGGAGCTGATCCGCATGCTGACCGAGGCCCACCGCCACACCAATGCACAGGGCTCCCACTGGAAACAGAAACGCAAGTTCCTGCCAGAGGACATAGGTCAGTCTCCCGTGGCCCCCACGTCGGACGGAGACAAGGTGGACCTGGAGGCCTTCAGTGAGTTCACCAAGATTATCACCCCTGCCATCACCCGCGTTGTCGACTTTGCCAAAAAACTTCCCATGTTCTCGGGGcTGCCTTGTGAGGACCAGATCATCCTATTAAAAGGCTGCTGTATGGAGATCATGTCGCTGCGCGCTGCCGTGCGCTATGACGAAGAGAGCGAGACGCTGACCCTGAGCGGCGAGATGGCGGTCAAGCGGGAGCAGTTGAAGAACGGCGGCTTGGGCGTGGTGTCGGACGCCATCTTCGACCTGGGCAAGAGCCTGGCGCAGTTCAATCTGGACGACACGGAGGTGGCGCTGCTGCAGGCTGTGCTGCTCATGAGCTCAGACCGCTCGGGCCTCACGAGCAGTGACAAGATCGAGAAGTGCCAGGAGACCTACCTGCTGGCGTTTGAACACTACATAAACTACCGCAAACACAACATTCCCCACTTCTGGCCCAAGCTGCTGATGAAGGTGACGGACCTGCGTATGATCGGGGCGTGCCACGCCAGCCGCTTCCTCCACATGAAGGTGGAGTGCCCAACTGAACTTTTCCCCCCGCTCTTCCTGGAGGTCTTCGAGGACCAGGAAGTGTGagtggcgccccccccccccccccccccccccccccctccccgctgCCAAATAGTAGAGTGGCGACTTGGGAAGGAATGGCTGTTTTTCTGGAGCAGGGGAGGGTTTTGGCAGGACTTGTGTTTCTCCGACATTTACGTGGTAAAGAACAAACAACAGGCAACAACCACACACCAGCAGCAGAGGTCAAACAAACAATGATTTTTGCTTTTAACCAACCACCTCTTCGTATCTGTTTTGGGGAATCAGTTTGGCGGCCCTCCCTGTCTGAGCAGTCTCATCCAGTGGGAGTTGCATCCCTTTGCCAAggcgcgcgcacgcacacgcacacacactctgggtCCCTTCCCAGAGCCTTATCGGCGGCACCTCATTTGTCACTCGCCACTAGATGGTGGTCTTCACAGCTTTGCACCGATTTGAACTGATGGCAACCATGTTTTAAACTGGTCCGCTAATTTCAGTCTCAGAATTGGTGTAAAACAATAATTCAAGTGACGCTGTCACACACAAGCAGAGGTCCTGAGCGTGTGCCATATAGCGCCTATCGTAGAGCAAAGCTACCAGTACCTACTATCATCTCCCAACGCAACTGAGCCATGAGCGTGATCATGTTTGAAACAAGTCAGGTGCTATGTTTATAAGTCTCCTTTAATTGTCTGAAATGTGTAAAACTACAGACCATGGCTCCGTATCTACCTTCAGTTCTGTCATTAGGCCGGTTCctgtgactcacacacacacacacacactgggcagaCGTGCCTTGTCATTGCCTGTGCTGCTGGTGCCAGCAGTAGACCCTCTTATGAATGACAATTGAGCCCTTCTCTCTCCAAGGAAAGTCATCGCAGTGAAGGAAAGAGGGGAAGATGGAAGGGGGCCCACTGACGGGGAGAGTTCTCAGAGGAGTACGAgtgaaagagaagaggggaggaataggatgagagagagagagagagagagagagagagagttaaatcACTGGCAAGTAGACTCAATGGCTGGAGACTGAACAGCATCCATATAGACTCCCACACCCTGTCTGAATAGCAGTGAACAAGGCAGGCAACtcatgtctctcacacacacacacatcctcaccTCAGAAACTCAAATGCCATGTTGACTGTACACATTGCAGTGATGTAGCCCTGACCTGCAGGGTAAGTTAGTCCGAGTCTGCGCCTGTGTGACTCAGCTCAGTATGGCCCCTCCAAGCTTCCATACTCAGTTGTTAGGGTAGCGGTCACTGAGAAAGGGCAAGGTCAATGACGTCTGCCATTTACCTCAAAGTGGGCACACCTTCACGGCTGGGGCGCCGCCATCGCTCCTGTGCCGACAGGCTCTACCTCACCTCTGGACACAGGGCAGCAGCCCCCAGCctcctcacccacccacccacccatctacacacacacacacacacacacacacacacacacacaaaaacacacacacacacactcttaaggATACTCAACAAACACACATGGGTGGAAACTCATAAGCACACATACATTAAGACGAATCCCTCAAACACACAATCTCAGTACTATCACTCAGTTGAAATGAAATACCACTGAAGACAGGAGGGCCTGCCTTTCCCTATGGGGACCTCATTGGTTTCACTGACTTCTCTCCTCTTTTTCGGGGGAACGGGGGATGGTAACCATTACGTTCGGCTTTTCTCTTTTTTGTTATGTGGGACCAAGTGTCACTATTCAAATTTGGAGtccctattttttatttttttcagttGAAACAGAAGCCAATAAATCACACGACGGAGGAAATTGCATGTCGCCCTGGAAGAGGATTGGCTGGAGAAGCGATACACCGCAAGCAAGCGGAGAACCCCAAGGTTACCAGGCCGTAGACGGGCGGGTTTAGCACTGTTGAGGGAACAAAAAAAAGTTCAAAGAGACAACCAATTTTCATTGAACGCTAAGCAGTAGTTTGTGAACGACTGAACGAGGCGGcgggagggatgaatggatggatgcgTTTCAGCATTCCGGGAGCATGTGGAGGAACGCGTGAGGACATGGAGCCGAGCGTTGAGTGGGACCAGGATGGCGGGTACTCATAGCAGACGGCCAAGCCTAACTGCAGCAACCTCAACCGCCGAAATCGACTGTTACCAGACTTCAGAGCACTCTAGTGGAGCAGCCAGAGCCCCCTCACACTACTGCAGTAgtcccatcccctctctccaccctccccacCCTCATCAGCAACTATACAACCCCTAATCCTCAAACCTAGCTTCAAGTCCTCTGTCAGGCATGCCCCCTCCTCTGAGAGTCCTGGCCGACTCTGTATAACATAGGCCACTGGAACAGGGCTCCCAACTAACCATGTCACATTTTCAGTATTAAACCAACAGCCCTCCTCCCCAACCCTCATCCACTCTGGGCTGGAGACGTCCctgggtgagggagggatggtCCGGGGTCTGTTTGTCACTCATACACTCTCCTCTCAGCATTGGTCTCCAAGTCTACCCAGATCCAGCCCCAGTACATACTCCTTCCCTTGCCCAACCACCCATTCACCCAACTCAATGTAGGAGGCCAACGGTAGGTCTGAAAAATGTACACCAAACTGAATCCATGCCTCTCCCTTGTGAGACAAGGCTGGCCATAACCGCTCACTTAGAGCGGCGTTACCGAATGAATGTGAACTGCAAAGCAGCAATGGGAGCGAGTGAAGGAGAGAGCGTAAGGGAGCGGGACAGAAAGAAGGTGGGGGCATCAGCCCTTCCTTCCGTCCTTCGTATGGCGTGGGTCGGAGGGGGACCGTCGCCCGTGGTCAAAGCTCCGTTATGAACTCAGAGGACGGGGAGATGATCAGGTGGTCTCCCCCTTAACTCCCAGCGAGTCCCCACCTTCGGCTCTCCATCAAGGCGAGCCACCAACTTTCACATGGAGACGATCGGCAACGGAAACAGAAGCGCCATTCAATGGATGCGGGTATGAAACTCCAAGCTTCGTGGACAAAGAACGAAGTGACAGAAAAAAAAGGTCCTTAGTTCCTGTGAGCcgattgggtgtgtgtgtgtgtgtgaaatggttGGTTGAAATGCTGCTTTTACCTTCTGAGTTGAATTTTTATTGAGAAAGACATATATGATGATAATGATTATGTACCCAGAAAAGTGAAATGAGGAATATATGACTTtaaaaagactcctgaacaaaAGTCGAATGCTTGGAGATCTTTTTCCCGTCATTGTATCTCAACGTTTTTTTTGTGTGATGTTTAtgtaatttttttttgtttttaacgcTTAAACTGCTTTacgtaaaagagagagaaaaaagaacagCCGTAGTCACTTTTTGACCACGCGTGCAGCGTAACGTAGACATTTTCCATCACCTATAGTTTATGTTGATAAGCCAACTGTTCTGTTGTCTGTGCATCTGTCTGATTGTCCGTCCCTTTTCAGGAGGAAtttacaacaaacaaaa
>TU1912110
CTCATAAGCACACATACATTAAGACGAATCCCTCAAACACACAATCTCAGTACTATCACTCAGTTGAAATGAAATACCACTGAAGACAGGAGGGCCTGCCTTTCCCTATGGGGACCTCATTGGTTTCACTGACTTCTCTCCTCTTTTTCGGGGGAACGGGGGATGGTAACCATTACGTTCGGCTTTTCTCTTTTTTGTTATGTGGGACCAAGTGTCACTATTCAAATTTGGAGtccctattttttatttttttcagttGAAACAGAAGCCAATAAATCACACGACGGAGGAAATTGCATGTCGCCCTGGAAGAGGATTGGCTGGAGAAGCGATACACCGCAAGCAAGCGGAGAACCCCAAGGTTACCAGGCCGTAGACGGGCGGGTTTAGCACTGTTGAGGGAACAAAAAAAAGTTCAAAGAGACAACCAATTTTCATTGAACGACTGAACGAGGCGGcgggagggatgaatggatggatgcgTTTCAGCATTCCGGGAGCATGTGGAGGAACGCGTGAGGACATGGAGCCGAGCGTTGAGTGGGACCAGGATGGCGGGTACTCATAGCAGACGGCCAAGCCTAACTGCAGCAACCTCAACCGCCGAAATCGACTGTTACCAGACTTCAGAGCACTCTAGTGGAGCAGCCAGAGCCCCCTCACACTACTGCAGTAgtcccatcccctctctccaccctccccacCCTCATCAGCAACTATACAACCCCTAATCCTCAAACCTAGCTTCAAGTCCTCTGTCAGGCATGCCCCCTCCTCTGAGAGTCCTGGCCGACTCTGTATAACATAGGCCACTGGAACAGGGCTCCCAACTAACCATGTCACATTTTCAGTATTAAACCAACAGCCCTCCTCCCCAACCCTCATCCACTCTGGGCTGGAGACGTCCctgggtgagggagggatggtCCGGGGTCTGTTTGTCACTCATACACTCTCCTCTCAGCATTGGTCTCCAAGTCTACCCAGATCCAGCCCCAGTACATACTCCTTCCCTTGCCCAACCACCCATTCACCCAACTCAATGTAGGAGGCCAACGGTAGGTCTGAAAAATGTACACCAAACTGAATCCATGCCTCTCCCTTGTGAGACAAGGCTGGCCATAACCGCTCACTTAGAGCGGCGTTACCGAATGAATGTGAACTGCAAAGCAGCAATGGGAGCGAGTGAAGGAGAGAGCGTAAGGGAGCGGGACAGAAAGAAGGTGGGGGCATCAGCCCTTCCTTCCGTCCTTCGTATGGCGTGGGTCGGAGGGGGACCGTCGCCCGTGGTCAAAGCTCCGTTATGAACTCAGAGGACGGGGAGATGATCAGGTGGTCTCCCCCTTAACTCCCAGCGAGTCCCCACCTTCGGCTCTCCATCAAGGCGAGCCACCAACTTTCACATGGAGACGATCGGCAACGGAAACAGAAGCGCCATTCAATGGATGCGGGTATGAAACTCCAAGCTTCGTGGACAAAGAACGAAGTGACAGAAAAAAAAGGTCCTTAGTTCCTGTGAGCcgattgggtgtgtgtgtgtgtgtgaaatggttGGTTGAAATGCTGCTTTTACCTTCTGAGTTGAATTTTTATTGAGAAAGACATATATGATGATAATGATTATGTACCCAGAAAAGTGAAATGAGGAATATATGACTTtaaaaagactcctgaacaaaAGTCGAATGCTTGGAGATCTTTTTCCCGTCATTGTATCTCAACGTTTTTTTTGTGTGATGTTTAtgtaatttttttttgtttttaacgcTTAAACTGCTTTacgtaaaagagagagaaaaaagaacagC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576029.2 False 4901 mRNA 0.52 9 20654464 20688063
TU1912110 True 1808 lncRNA 0.49 2 20686091 20687919

Neighbor

gene id symbol gene type direction distance location
LOC118942050 NA coding upstream 10396 20493325 ~ 20644068 (+)
LOC110499115 LOC106589298 coding upstream 285188 20319484 ~ 20369276 (+)
LOC110499117 LOC106589296 coding upstream 339554 20308748 ~ 20314910 (+)
LOC110499120 LOC106589294 coding upstream 363323 20172414 ~ 20291141 (+)
LOC110499123 LOC106589291 coding upstream 716143 19915972 ~ 19938321 (+)
LOC110499112 LOC106589300 coding downstream 18336 20706399 ~ 20735339 (+)
LOC110499111 LOC106589301 coding downstream 47369 20735432 ~ 20764082 (+)
LOC110499108 LOC106578253 coding downstream 314588 21002651 ~ 21040111 (+)
LOC110499107 LOC106578254 coding downstream 466472 21154535 ~ 21168654 (+)
trnal-uag-53 NA coding downstream 540460 21228523 ~ 21228604 (+)
G1671279 NA non-coding upstream 100926 20553314 ~ 20553538 (+)
G1671278 NA non-coding upstream 101472 20552783 ~ 20552992 (+)
G1671259 NA non-coding upstream 124920 20529228 ~ 20529544 (+)
G1671252 NA non-coding upstream 132352 20521815 ~ 20522112 (+)
G1671251 NA non-coding upstream 132667 20521581 ~ 20521797 (+)
G1671235 NA non-coding downstream 10104 20698167 ~ 20699165 (+)
G1671391 NA non-coding downstream 68428 20756491 ~ 20770444 (+)
G1672761 NA non-coding downstream 212710 20900773 ~ 20901240 (+)
G1672762 NA non-coding downstream 213269 20901332 ~ 20901794 (+)
G1672763 NA non-coding downstream 213867 20901930 ~ 20902289 (+)
G1671091 NA other upstream 426296 20227795 ~ 20228168 (+)
LOC110499153 LOC106589263 other upstream 1529228 19094882 ~ 19201695 (+)
G1670209 LOC105007702 other upstream 2533297 18051611 ~ 18132470 (+)
G1670126 NA other upstream 2880762 17767481 ~ 17773702 (+)
G1670129 NA other upstream 2893652 17752294 ~ 17760812 (+)
G1672918 NA other downstream 401340 21089403 ~ 21089830 (+)
G1672973 NA other downstream 452462 21140525 ~ 21191078 (+)
G1673044 NA other downstream 608309 21296372 ~ 21296854 (+)
G1673063 NA other downstream 628735 21316798 ~ 21317412 (+)
G1673204 NA other downstream 698266 21386329 ~ 21389778 (+)

Expression


Co-expression Network