LOC110499112 (LOC106589300)


Basic Information

Item Value
gene id LOC110499112
gene name LOC106589300
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 20706399 ~ 20735339 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036955957.1
CCGGCAGAACCGGAAATGGTGTCATTCTCCATCAAATTCCAAATATGTCTGCTGCTGGTTTcttctgaaaacaaaacaatctCGTGGAGAATGGCAAATATCGGAGATAACGAGCTAGAACAGCTCGAATACCTTTCGTTAGTATCCAAAGTGTGCACAGAACTCGACAACCATCTGGGGATAAGCGATAAAGATCTAGCCGAGTTTGTCATCAGCCTTGCTGAAAAGCAACCAACGTTTGATGGCTTTAAATCACTTCTATTGAAAAATGGCGCAGAATTCACAGATTCACTTGTTGGCAATTTGCTCAGACTTATTCAAACGATGCGGCCTCCATCAAAGACATCTACAAACAAAGCTGTTGAGCCTGTGGTCAAGCAGAAGAGTGAGAAAGACAAACTGAAGGAGTTGTTTCCTGCGTTATGCAGGCCAGACGATCCGGCTCCTAAGgccaTACTAGACGAAGACGATGTGAAAATCGCAGACGCCGCCATGAAGGAGTTGGAGATGTTCATGCCCAGTGTGAGTAGATCAGACTCAAAGAGCAAGAGCAGGTCGGACAAAAAGAGGCGGCACAGCAGAAGCCGGAGCCGagacagggacaggaggaggcGTCATCGTTCTCGGTCCCGCTCTCGCTCTAGATCTCGATCTAGGGACCGTGATCGTCAGAGAGACCGCGACCGTGAGAGGGACCGCGACCGTGGTAAGAAACGTGCGTCTCGCTGGAGTGAGCGCAGTCGCACCCCCAGCCCCCacagagaccgagacagggaCACAAAGGAAGGCTCGGACCGGTGGAAGGACAAACATGTGGACCGCCCACCACCAGAGGAGCCTACCGTGGGAGACATATTCAACGGCAAAATCACCAGCATCATGCAGTTTGGCTGCTTTGTGCAACTGGAGGGGCTGAGGAAACGCTGGGAGGGGTTGGTGCACATCTCTGAGCTACGCAGAGAGGGACGTGTTGCCAATGTGGCTGATGTGGTCCAGAAAGGTCAACGAGTCAAGATCAAGGTGCTGTCCTTCACTGGCTCCAAGACCAGTCTCAGCATGAAGGATGTGGACCAGGAAACTGGGGAGGACCTGAACCCCAACAGAAGGAGGAACCAGGGCCCTGATGGTGAGGACGAGAAAATCATGAGGAACCCCGACCGCCCAACCAACCTCAACCTGGGCCACGCCCCTGAGTTGGAGGATGACACACTGGAACGCAAGAGACTGACCAAGATATCTGACCCCGAGAAGTGGGAAATCAAACAGATGATTGCTGCTAATGTTCTTTCTAAAGAGGAGTTCCCTGACTTTGACGAGGAGACTGGTATCCTCCCCAAAGTTGATGACGAAGAAGATGAGGACCTGGAGATTGAGCTGGTGGAGGAGGAGCCTCCGTTCCTGAGAGGACACACTAAACAGAGTATGGACATGAGCCCTGTCAAGATTGTTAAGAATCCAGACGGTTCGCTGTCCCAGGCTGCCATGATGCAGAGTGCATTGgctaaggagaggagggaggtgaagcAGTGTCAGCGAGAGGCTGAGATGGACTCTATCCCCATGGGCCTGAACAAACACTGGGTAGACCCTCTGCCTGATGTTGATGGAAGGCAGATTGCAGCCAACATGAGAGGAATTGGCATGATGCCAACTGACATCCCGGAGTGGAAGAAACATGCCTTTGGGGGCAACAAGGCCTCTTACGGCAAGAAGACGGCAATGTCCAtcctggagcagagagagagcctgCCCATCTACAAGCTCAAAGAGCAACTCATACAGGCTGTCCATGATAACCAGATCTTGATTGTTATTGGAGAGACTGGTTCTGGGAAAACTACCCAGATCACCCAGTACCTGGCCGAGGCGGGCTACACCACTCGGGGGAAGATCGGCTGCACTCAGCCCCGTCGTGTGGCAGCCATGTCTGTGGCCAAGAGAGTTTCTGAAGAGTACGGTTGCTGTCTTGGCCAGGAGGTGGGCTACACCATCCGTTTTGAGGACTGCACCAGCCCTGAGACGGTGATCAAGTACATGACAGACGGTATGTTGCTGAGAGAGTGTTTGATAGATCCGGACCTTGGCCAGTACGCCATCATCATGTTGGATGAGGCCCACGAGAGGACCATCCATACCGATGTGCTCTTCGGTCTGCTCAAGAAGACGGTGCAGAAACGCACAGACATGAAGCTGATTGTCACTTCAGCCACGCTAGATGCCGTCAAGTTCTCCCAGTACTTCTACGAAGCGCCCATCTTTACCATTCCAGGACGCACCTATCCAGTGGAGGTGCTCTACTGCAAAGAGCCTGAGACGGACTACCTGGACGCCAGTCTCATCACCGTCATGCAGATCCACCTGACCGAGCCTCCAGGTGATGTCCTGGTGTTTCTGACGGGTCAGGAGGAGATTGACACCGCTTGTGAGATCTTGTATGAACGGATGAAGTCTCTGGGACCTGAAGTGCCTGAACTCATCATTCTACCTGTCTACTCTGCGCTGCCAAGCGAGATGCAGACCCGTATCTTTGACCCTGCTCCCCCCGGCAGCAGAAAGGTTGTCATTGCCACTAACATTGCTGAGACGTCGCTGACCATTGACGGTATCTACTACGTTGTGGACCCAGGATTTGTGAAGCAAAAGGTGTACAACTCCAAGACTGGTATTGACCAGCTGGTGGTGACTCCCATTTCACAGGCCCAAGCCAAGCAGCGGGCTGGTAGAGCTGGAAGAACTGGCCCAGGGAAGACCTACAGGCTGTACACTGAGAGAGCATACAGAGACGAGATGCTCACCACCAATGTGCCTGAGATCCAGAGAACTAACTTGGCCAGCACTGTGCTGTCCCTCAAGGCCATGGGCATCAATGACCTGCTATCGTTTGATTTCATGGACGCTCCACCCATGGAGACGCTGATCACTGCCATGGAGCAGCTCTACACTCTGGGGTCTCTGGACGATGAAGGGTTGCTCACTCGTCTCGGACGCAGGATGGCGGAGTTCCCTCTGGAGCCCATGCTGTGTAAGATGCTGATCATGTCCGTCCACCTGGGCTGCAGTGAGGAGATGCTCACCATCGTCTCCATGCTGTCTGTGCAGAACGTCTTCTACAGGCCCAAGGACAAGCAGGCCCTGGCTGACCAGAAGAAGGCCAAGTTCCACCAGGCCGAGGGAGACCACCTTACTCTGCTGGCTGTCTATAACTCCTGGAAGAACAACAAGTTCTCCAACCCCTGGTGCTACGAGAACTTCATCCAGGCTCGTTCCTTGCGCAGAGCCCAGGATATCCGCAAGCAGATGCTGGGTATCATGGACAGACATAAACTTGATGTGGTGACTTGTGGAAAGGCCACGGTGCGTGTGCAGAAGGCCATCTGCAGTGGTTTCTTCCGGAACGCAGCCAAAAAGGATCCCCAGGAGGGCTACCGTACGCTCATTGACCAGCAGGTGGTGTACATCCACCCCTCCAGTGCCCTGTTCAACCGCCAGCCTGAGTGGGTGGTGTACCATGAGTTGGTGCTGACTACTAAGGAGTACATGCGGGAGGTGACCACCATTGACCCACGCTGGCTGGTAGAGTTCTCGCCGGCCTTTTTCAAAGTGTCCGACCCCACGCGTCTCAGCAAACAGAAGAAGCAGCAGCGCCTCGAGCCCCTCTACAACCGTTACGAGGAGCCCAACGCTTGGAGAATCTCCCGCGCCTTTCGGCGGCGCTAGAATGTGCATCTTGTATCTAcaacacagaaagagagggacacaTTCCTATATCAGCTGGTTGAGAAATACCATGGAGAGACATTGTCTGCCAACAGGCCTTTTTAGCTGTAACATGCGATTTGATAAAGCTGGGTCATTATCTACTTGTTTTGGACATGTGTAAAGTATGTGTTATATGTGCTCAGCTGTTTTCTATTAACTGCAATTCTATCATTTTGAGCTGAATTCTGGTAGGCTGAATTCTTTCTCTTGACCTAGTCAACTAGCAGTCAACTAGTAAAATTAGGTCATTGCTCTCCTGTCCTTACAGGCTTACCTGGGTAACATGAATAAAAATGTCTCATCCCCCTGAGGAGAATCAATCTTATATTTGAGTATCATGGACAACGAAACATGTTTGTTTTACTTGAATGTCACATCTGAcctgtgtgtaaacttctgaaaaATGATCAATTGAATAGGAAGGGGACTGGGCAGTAATTTGACAAGGCAGTGAACGTCTTTGTTTAAAAAGCACAGTGCTCTGAGACAGTTTGTCTTTTATAGTAGGCTATATTTTTATACAATGAAGGGAGATACCAGTATGGAACTTAATACTTGGGCATTGTCTTTGGTTTAGCTTTGTGTGATTCCTTTACTGTGCTAGTGTAATCCTAACATTTTCTGCACTCATTAAATGTATGGTCTCATAATTTTTGTTGCTAATGTTTCATTGACATCCACACTGGAGACCAATATCAGTTTtgtggctcctgagtggcgcagcggtctaaggcactgctcagtgccagaggtgtcactacagaccctggttcgactccaggctgtatcacaagccTTGATTtgcagtcccatagggcggtgcacaattggcccagcgtcgtccgggttaggtggtcattgtaaacaagaatttgttcttaaactgacttgcctcgttaaataaaggtttaaaaaa

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K12818 DHX8, PRP22; ATP-dependent RNA helicase DHX8/PRP22

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036955957.1 True 4675 mRNA 0.51 22 20706399 20735339

Neighbor

gene id symbol gene type direction distance location
LOC110499114 LOC105007436 coding upstream 18336 20654464 ~ 20688063 (+)
LOC118942050 NA coding upstream 62331 20493325 ~ 20644068 (+)
LOC110499115 LOC106589298 coding upstream 337123 20319484 ~ 20369276 (+)
LOC110499117 LOC106589296 coding upstream 391489 20308748 ~ 20314910 (+)
LOC110499120 LOC106589294 coding upstream 415258 20172414 ~ 20291141 (+)
LOC110499111 LOC106589301 coding downstream 93 20735432 ~ 20764082 (+)
LOC110499108 LOC106578253 coding downstream 267312 21002651 ~ 21040111 (+)
LOC110499107 LOC106578254 coding downstream 419196 21154535 ~ 21168654 (+)
trnal-uag-53 NA coding downstream 493184 21228523 ~ 21228604 (+)
LOC110499104 LOC106589524 coding downstream 498872 21234211 ~ 21277617 (+)
G1671235 NA non-coding upstream 7234 20698167 ~ 20699165 (+)
G1671279 NA non-coding upstream 152861 20553314 ~ 20553538 (+)
G1671278 NA non-coding upstream 153407 20552783 ~ 20552992 (+)
G1671259 NA non-coding upstream 176855 20529228 ~ 20529544 (+)
G1671391 NA non-coding downstream 21152 20756491 ~ 20770444 (+)
G1672761 NA non-coding downstream 165434 20900773 ~ 20901240 (+)
G1672762 NA non-coding downstream 165993 20901332 ~ 20901794 (+)
G1672763 NA non-coding downstream 166591 20901930 ~ 20902289 (+)
G1672765 NA non-coding downstream 180426 20915765 ~ 20916840 (+)
G1671091 NA other upstream 478231 20227795 ~ 20228168 (+)
LOC110499153 LOC106589263 other upstream 1581163 19094882 ~ 19201695 (+)
G1670209 LOC105007702 other upstream 2585232 18051611 ~ 18132470 (+)
G1670126 NA other upstream 2932697 17767481 ~ 17773702 (+)
G1670129 NA other upstream 2945587 17752294 ~ 17760812 (+)
G1672918 NA other downstream 354064 21089403 ~ 21089830 (+)
G1672973 NA other downstream 405186 21140525 ~ 21191078 (+)
G1673044 NA other downstream 561033 21296372 ~ 21296854 (+)
G1673063 NA other downstream 581459 21316798 ~ 21317412 (+)
G1673204 NA other downstream 650990 21386329 ~ 21389778 (+)

Expression


Co-expression Network