LOC110499111 (LOC106589301)


Basic Information

Item Value
gene id LOC110499111
gene name LOC106589301
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 20735432 ~ 20764082 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576024.2
AAGTTCGTAACGTAACGTGCGTGTTACCAATGCCTGCGTtttctgaaaacaaaacaaacactggACACTATGGCAGACTTTGGAGTTGAGGAGCTTAAGCGGCTTGAATACCTGTCTTTGGTGTCCAAAGTGTGTACAGAACTTGACAACCATCTTGGTATATGCGAGAAAGATCTTGCTGAGTTTGTCATCTGCCTTGCTGAAAAGCAACCAACATTTGATGGCTTCAAATCACTTCTGCTGAAAAATGGAGCAGACTTCACAGATTCTCTCATCGGCAATTTGCTCAGACTTATTCAAACTATGCGGCCGTCAAAAGCATCTACGAGCAAAGCCTCTGAGCCTGTGGTCAAACAGAAGAGTGAGAAGGACAAACTGAAGGAGATGTTTCCTGGATTGTGCAGGCCAGACAATCCAGCTCCCATTCCGCTAGAAGACGATGATGTGAGGGTAGCAGATGCTGCCATGAAAGAATTGGAGATGTTCATGCCCAGTGTTAGTGGAACAAACTCAACGAGCAGGTTGGACAACAAAAGGCAGCGAAGCAGAAGTCGGAGCcaagacagagacaggaagagacgcTCACGCTCTCCGTCTTGCGAccgtgagagggacagagacttcAAACGCGGTCGAAAACGTGTTTCCCGCTGGAGTGATCGCAGTCCGAGCCCCTCCAGGGATCGAGACATTGAGGTTGGTTCTGACCGCTGTAAGGACAAACACATGGACCGGCCCCCACCAGAAGAGCCTGCTGTAGGGGACATATTCAACGGCAAAGTCACCAGCATCCTGCAGTTTGGCTGCTTCGTGCAACTGGAGGGACTGAGGAAACGCTGGGAGGGGTTGGTCCACATCTCTGAGCTACGCAAAGAGGGACGTGTTGCCAATGTGGCTGATGTGGTCCAGAAAGGTCAACGAGTCAAGATCAAGGTGCTGTCCTTCACTGGATCCAAGACCAGTCTCAGCATGAAGGATGTAGACCAGGAAACAGGGGAGGACCTGAACCCGAACAGGAGGAGGAACCAGGGCcctgatggtggggaggagaaaaTCATGAGGAACCCCGACCGCCCAACCAACCTCAACCTGGGCCATGCCCCTGAGTTGGAGGATGACACACTGGAGCGCAAGAGACTGACCAAGATATCTGACCTTGAGAAGTGGGAGATCAACCAGATGATTGCTGCTAATGTTCTTTCTAAAGAGGAGTTCCCCGACTTTGACGAGGAGACGGGTATCCTCCCAAAAATTGATGATGAAGAAGATCAGGACCTGGAGATTGAGCTGGTGGAGGAGGAGCCTCCGTTCCTGAGAGGACACACTAAACAGAGTATGGACATGAGCCCTGTCAAGATTGTTAAGAATCCAGATGGCTCGCTGTCCCAGGCAGCCATGATGCAGAGTGCTTTGgctaaggagaggagggaggtgaagcAGGCTCAGCGAATGGCTGAGATGGACTGCATACCTATTGGCCTCAACAAGCACTGGGTAGACCCCCTGCCTGACTTTGATGGAAGGCAGATTGCAGCCAACATGAGAGGAATTGGCATGATGCCAGACGGCGTCCCGGAGTGGAAGAAACATGCCTTTGGAGGCAACCAGGCCTCTTATGGCAAGAAGACAGTGCTTTCCAtcctggagcagagagagagcctgCCCATCTTCAAGCTCAAAGAGCAGCTCATACAGGCTGTCCACGATAATCAGATCCTGATTGTGGTTGGAGAGACTGGCTCTGGGAAAACTACCCAGATCACCCAGTACCTGGCCGAGGCGGGCTACTCCGCTCGGGGGAAGATCGGCTGCACTCAGCCCCGTCGTGTGGCAGCCATGTCCGTGGCCAAGAGAGTCTCTGAAGAGTACGGTTGCTGTCTTGGCCAGGAGGTGGGCTACACCATCCGTTTTGAGGACTGCACCAGCCCTGAGACGGTGATCAAGTACATGACACATGGTATGCTGCAGAGGGAATGTCTGATAGATCCGGACATGGGTCAGTACACCATCATCATGTTGGACGAGGCCCACGAGAGGACCATCCATACTGACGTGCTCTTTGGTCTGCTCAAGAAGACAGTGAAGAAGCGCCCAGACATGAAGCTGATTGTGTCCTCAGCGACACTAGATGCCGTCAAGTTCTCACAGTACTTCTTCGAGGCGCCCATCTTTACCATCCCAGGACGCACTTTCCCAGTGGAGGTGCTCTACTGCAAAGAGCCTGAGACGGACTACCTGGACGCCAGTCTCATCACCGTCATGCAGATCCACCTGACCGAGCCTCCAGGTGATGTCCTGGTGTTTCTGACGGGTCAGGAGGAGATTGACACCGCTTGTGAGATCTTGTATGAACGGATGAAGTCTCTGGGACCTGAAGTGCCTGAACTCATCATTCTACCTGTCTACTCTGCGCTGCCAAGCGAGATGCAGACCCGTATCTTTGACCCTGCTCCCCCCGGCAGCAGGAAGGTAATCATTGCCACTAACATTGCTGAGACGTCTCTGACTATTGATGGGATTTACTATGTGGTGGACCCAGGCTTTGTAAAGCAGAATGTCTACAATTCCAAGACTGGCGTCGACCAATTAGTGGTGACCCCCATATCACAGGCCCAAGCCAAGCAGCGTTCTGGTAGGGCTGGAAGAACTGGCCCTGGGAAATGCTACCGGCTATTTACAGAGAGAGCCTACAGAGACGAGATGCTCACCAGCAATGTGCCTGAAATCCAGAGAACAAACCTGGCCAGTACCATGCTGTCTCTCAAGGCCATGGGCATCAATGACCTGCTATCGTTTGATTTCATGGACGCTCCACCCATGGAGACGATGATCACAGCCATGGAGCAGCTCTACACTTTAGGGGCTCTGGATGATGAGGGGTTGCTCACTCGACTTGGACGCAGGATGGCGGAGTTCCCTCTGGAGCCCATGCTGTGTAAGATGCTGATCATGTCCGTCCACCTGGGCTGCAGTGAGGAGATGCTCACCATCGTCTCCATGCTGTCTGTGCAGAACGTCTTCTACAGGCCCAAGGACAAGCAGCAGATGGCAGACCAGAAGAAGGCTAAGTTCCACCAGGCTGAGGGAGACCACCTTACTCTGCTGGCTGTCTATAACTCCTGGAAGAACAACAAGTTCTCCAACCCCTGGTGCTTTGAGAACTTCATCCAGGCCCGTTCCTTGCGCAGAGCCCAGGATATCCGCAAACAGATGCTGGGTATCATGGACAGGCATAAACTGGACATGGTGTCTTGTGGCAAGGCCACAGTGCGCATACAGAAGGCCATCTGCAGTGGTTTCTTCCGGAACGCAGCCAAAAAGGATCCCCAGGAGGGCTACCGTACGCTCATTGACCAGCAGGTGGTGTACATCCACCCCTCCAGTTCCCTGTTCAACCGCCAGCCTGAGTGGTTAGTGTACCATGAGTTGGTGCTGACCACTAAGGAGTACATGAGGGAGGTGACCACCATTGACCCACGCTGGCTGGTAGAGTTCTCGCCGGCCTTTTTCAAAGTGGCCGATCCCACGCGTCTCAGCAAACAGAAGAAGATGCAGCGCCTCGAGCCCCTCTACAACCGTTACGAGGAGCCCAACGCTTGGAGAATCTCCCGTGCCTTTCGCAGGAAGTAGAGGTGTATCCCTATACCCTTACACACAGGCTCACAccacagcaggagagagagggagactgtccTTGACAACTGGTTGAGAAATACCCCGTCCATTGTTCCTTGCTGTGTTCCTTCCGAGTCATTTGGCTTCATGGTCAATGTCAGTTAACTTACCTCCCATCAGACAGATAATCAAGTGCCCATATATTaccaaaaagttttttttttgtccaatGTATAAATTATCTCAAAACAGAACATTACGGATTCCCTCAAAGAAAATGACCATTAAGTGATTAGGAAGGAGACTGGACACTTTAAGTGGGCAGTAATCTGATCAGTCAGTGGAAGTCTGTTTGTTTATGAGGACACAATGCTCAGAGTCCATTTAGTCTAGAGGTCTCATGTAATATAGTTTATATCTAGGGAAATGGATCGGACTTTGATTGTGGTCAACAATTACCAGATCTGTGGTTTTATTAAGATGACGGAAATGTAAGCGAACTGAAATGAGTGATATCTAAATGACCATATTTTTCCATATTAAATATTGGATGGTCTCA
>XM_036955958.1
CAGGACCTGGAGATTGAGCTGGTGGAGGAGGAGCCTCCGTTCCTGAGAGGACACACTAAACAGAGTATGGACATGAGCCCTGTCAAGATTGTTAAGTGTGAACAAATGCCGTTCTCTCGGTTTGCCTCTGTCAGAATCCAGATGGCTCGCTGTCCCAGGCAGCCATGATGCAGAGTGCTTTGgctaaggagaggagggaggtgaagcAGGCTCAGCGAATGGCTGAGATGGACTGCATACCTATTGGCCTCAACAAGCACTGGGTAGACCCCCTGCCTGACTTTGATGGAAGGCAGATTGCAGCCAACATGAGAGGAATTGGCATGATGCCAGACGGCGTCCCGGAGTGGAAGAAACATGCCTTTGGAGGCAACCAGGCCTCTTATGGCAAGAAGACAGTGCTTTCCAtcctggagcagagagagagcctgCCCATCTTCAAGCTCAAAGAGCAGCTCATACAGGCTGTCCACGATAATCAGATCCTGATTGTGGTTGGAGAGACTGGCTCTGGGAAAACTACCCAGATCACCCAGTACCTGGCCGAGGCGGGCTACTCCGCTCGGGGGAAGATCGGCTGCACTCAGCCCCGTCGTGTGGCAGCCATGTCCGTGGCCAAGAGAGTCTCTGAAGAGTACGGTTGCTGTCTTGGCCAGGAGGTGGGCTACACCATCCGTTTTGAGGACTGCACCAGCCCTGAGACGGTGATCAAGTACATGACACATGGTATGCTGCAGAGGGAATGTCTGATAGATCCGGACATGGGTCAGTACACCATCATCATGTTGGACGAGGCCCACGAGAGGACCATCCATACTGACGTGCTCTTTGGTCTGCTCAAGAAGACAGTGAAGAAGCGCCCAGACATGAAGCTGATTGTGTCCTCAGCGACACTAGATGCCGTCAAGTTCTCACAGTACTTCTTCGAGGCGCCCATCTTTACCATCCCAGGACGCACTTTCCCAGTGGAGGTGCTCTACTGCAAAGAGCCTGAGACGGACTACCTGGACGCCAGTCTCATCACCGTCATGCAGATCCACCTGACCGAGCCTCCAGGTGATGTCCTGGTGTTTCTGACGGGTCAGGAGGAGATTGACACCGCTTGTGAGATCTTGTATGAACGGATGAAGTCTCTGGGACCTGAAGTGCCTGAACTCATCATTCTACCTGTCTACTCTGCGCTGCCAAGCGAGATGCAGACCCGTATCTTTGACCCTGCTCCCCCCGGCAGCAGGAAGGTAATCATTGCCACTAACATTGCTGAGACGTCTCTGACTATTGATGGGATTTACTATGTGGTGGACCCAGGCTTTGTAAAGCAGAATGTCTACAATTCCAAGACTGGCGTCGACCAATTAGTGGTGACCCCCATATCACAGGCCCAAGCCAAGCAGCGTTCTGGTAGGGCTGGAAGAACTGGCCCTGGGAAATGCTACCGGCTATTTACAGAGAGAGCCTACAGAGACGAGATGCTCACCAGCAATGTGCCTGAAATCCAGAGAACAAACCTGGCCAGTACCATGCTGTCTCTCAAGGCCATGGGCATCAATGACCTGCTATCGTTTGATTTCATGGACGCTCCACCCATGGAGACGATGATCACAGCCATGGAGCAGCTCTACACTTTAGGGGCTCTGGATGATGAGGGGTTGCTCACTCGACTTGGACGCAGGATGGCGGAGTTCCCTCTGGAGCCCATGCTGTGTAAGATGCTGATCATGTCCGTCCACCTGGGCTGCAGTGAGGAGATGCTCACCATCGTCTCCATGCTGTCTGTGCAGAACGTCTTCTACAGGCCCAAGGACAAGCAGCAGATGGCAGACCAGAAGAAGGCTAAGTTCCACCAGGCTGAGGGAGACCACCTTACTCTGCTGGCTGTCTATAACTCCTGGAAGAACAACAAGTTCTCCAACCCCTGGTGCTTTGAGAACTTCATCCAGGCCCGTTCCTTGCGCAGAGCCCAGGATATCCGCAAACAGATGCTGGGTATCATGGACAGGCATAAACTGGACATGGTGTCTTGTGGCAAGGCCACAGTGCGCATACAGAAGGCCATCTGCAGTGGTTTCTTCCGGAACGCAGCCAAAAAGGATCCCCAGGAGGGCTACCGTACGCTCATTGACCAGCAGGTGGTGTACATCCACCCCTCCAGTTCCCTGTTCAACCGCCAGCCTGAGTGGTTAGTGTACCATGAGTTGGTGCTGACCACTAAGGAGTACATGAGGGAGGTGACCACCATTGACCCACGCTGGCTGGTAGAGTTCTCGCCGGCCTTTTTCAAAGTGGCCGATCCCACGCGTCTCAGCAAACAGAAGAAGATGCAGCGCCTCGAGCCCCTCTACAACCGTTACGAGGAGCCCAACGCTTGGAGAATCTCCCGTGCCTTTCGCAGGAAGTAGAGGTGTATCCCTATACCCTTACACACAGGCTCACAccacagcaggagagagagggagactgtccTTGACAACTGGTTGAGAAATACCCCGTCCATTGTTCCTTGCTGTGTTCCTTCCGAGTCATTTGGCTTCATGGTCAATGTCAGTTAACTTACCTCCCATCAGACAGATAATCAAGTGCCCATATATTaccaaaaagttttttttttgtccaatGTATAAATTATCTCAAAACAGAACATTACGGATTCCCTCAAAGAAAATGACCATTAAGTGATTAGGAAGGAGACTGGACACTTTAAGTGGGCAGTAATCTGATCAGTCAGTGGAAGTCTGTTTGTTTATGAGGACACAATGCTCAGAGTCCATTTAGTCTAGAGGTCTCATGTAATATAGTTTATATCTAGGGAAATGGATCGGACTTTGATTGTGGTCAACAATTACCAGATCTGTGGTTTTATTAAGATGACGGAAATGTAAGCGAACTGAAATGAGTGATATCTAAATGACCATATTTTTCCATATTAAATATTGGATGGTCTCA

Function

NR:

description
ATP-dependent RNA helicase DHX8-like isoform X1

GO:

id name namespace
GO:0070054 mRNA splicing, via endonucleolytic cleavage and ligation biological_process
GO:0060215 primitive hemopoiesis biological_process
GO:0051301 cell division biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K12818 DHX8, PRP22; ATP-dependent RNA helicase DHX8/PRP22

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576024.2 False 4174 mRNA 0.51 23 20735432 20764082
XM_036955958.1 True 2943 mRNA 0.52 14 20748856 20764082

Neighbor

gene id symbol gene type direction distance location
LOC110499112 LOC106589300 coding upstream 93 20706399 ~ 20735339 (+)
LOC110499114 LOC105007436 coding upstream 47369 20654464 ~ 20688063 (+)
LOC118942050 NA coding upstream 91364 20493325 ~ 20644068 (+)
LOC110499115 LOC106589298 coding upstream 366156 20319484 ~ 20369276 (+)
LOC110499117 LOC106589296 coding upstream 420522 20308748 ~ 20314910 (+)
LOC110499108 LOC106578253 coding downstream 238569 21002651 ~ 21040111 (+)
LOC110499107 LOC106578254 coding downstream 390453 21154535 ~ 21168654 (+)
trnal-uag-53 NA coding downstream 464441 21228523 ~ 21228604 (+)
LOC110499104 LOC106589524 coding downstream 470129 21234211 ~ 21277617 (+)
LOC110499103 LOC106589525 coding downstream 568212 21332294 ~ 21377525 (+)
G1671235 NA non-coding upstream 36267 20698167 ~ 20699165 (+)
G1671279 NA non-coding upstream 181894 20553314 ~ 20553538 (+)
G1671278 NA non-coding upstream 182440 20552783 ~ 20552992 (+)
G1671259 NA non-coding upstream 205888 20529228 ~ 20529544 (+)
G1672761 NA non-coding downstream 136691 20900773 ~ 20901240 (+)
G1672762 NA non-coding downstream 137250 20901332 ~ 20901794 (+)
G1672763 NA non-coding downstream 137848 20901930 ~ 20902289 (+)
G1672765 NA non-coding downstream 151683 20915765 ~ 20916840 (+)
G1672766 NA non-coding downstream 163867 20927949 ~ 20928209 (+)
G1671091 NA other upstream 507264 20227795 ~ 20228168 (+)
LOC110499153 LOC106589263 other upstream 1610196 19094882 ~ 19201695 (+)
G1670209 LOC105007702 other upstream 2614265 18051611 ~ 18132470 (+)
G1670126 NA other upstream 2961730 17767481 ~ 17773702 (+)
G1670129 NA other upstream 2974620 17752294 ~ 17760812 (+)
G1672918 NA other downstream 325321 21089403 ~ 21089830 (+)
G1672973 NA other downstream 376443 21140525 ~ 21191078 (+)
G1673044 NA other downstream 532290 21296372 ~ 21296854 (+)
G1673063 NA other downstream 552716 21316798 ~ 21317412 (+)
G1673204 NA other downstream 622247 21386329 ~ 21389778 (+)

Expression


Co-expression Network