LOC110499103 (LOC106589525)


Basic Information

Item Value
gene id LOC110499103
gene name LOC106589525
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 21332294 ~ 21377525 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576002.2
tCACAATGTCTtgctcttcctctatctctcttcctctctctcgttcaTTGTGTTGAGCAGAGGGGATTGAATTTGGCTCCTGAACTGTTACGTTTTCACGGAGCTCAGAGTGAGTCACAttcaacagcacacacacactctcacacacacccacccacttgcacacacacacacgcgcacagagGCAGGATTGTCAGCAAGAGCAGCGCGGTGCTCTTTGGGATTGCAACCACAAgtggactggtctggtctggacctCCAAGCCACCCTCAAACACTGAGctaggaggaggaacagggaagCACTGCTTTAACGAGAGGAGAGGTCGCCTGTGGTGGACAAAGCTGCTACAAAACTACTTGGAGAATGGAAAAAACATAAGGAAAAATACAAACTCCTTTACCCTATAGAGAAAAATGCTGAGTAAAGTTTGTGGTTAATTGTTAATGGAATATACCCTGGTATATTGAAACTGCTGCTTTCTCTAAAGGCAATTTCAAAAGACAAAGGTAAGACAAACCTACTACGATGGTCCAGAGGATTTTAGTCCAGAGCATCAGATATTTGAGCTATTTTGCACTGTTCTGAGTAACCGGCATGCTTGTaccaaaacaaaaatgtaaaatctACAAACACTTTCTGTCTGTTCCCATTATTCATACATCGCATATGTGAGTGATTGAACTGTGGGTGAACCTTTCAATTATGGAACGTCAGTTAGTATTCGTCTGTTTGGGAGACAGGAACCACATACTTTAGATTTTTGGACTTTAGATTTTTCTTTGTTGTTTCTCCCCAAACGTGTTGGTCTGTCTCTGACTACAAGCCCTGCTCTGAGACTCTGATCTCTGGTCTGACCCACCATAGTGAACTGTTCTAAAGCCTCAGCTTGGCACTGAGGATGGGGTGTACCATGGCAGCGTGCCCACTGTCCTGCCTCCTCCTCATCCTATCCTTCATCCTGACGGGGCCCAGCCTGGCCCAGGACCTCACCAGCTCCACCACCGCTGGCCCGGACACTGTCCAAACCCAGACAGAGAATCAGACAGCTCCGATGACCCCCACCACAACGGAGCCCATCACCACGCTAGTAACCACAGAGTTCAGCGGCATGTCGACACCCAGCGGCGACATCACGGATGATGAGGATGCCATCCCTACCAAAGGCACCCGTTGCCAAGGTTACTACGATGTGATGGGCCAGTGGGACCCACCTTTCAACTGCAATATGGGTGTTTTCCTGTACTGCTGTGGTACCTGCTTCTACCGCTTCTGCTGCCAGTTCAGAGGGCAGCGGCTCGACCAGAGCATCTGCTCAAACTATGACACACCCATCTGGGCCAACACGGGCAAGCCCATCACCACGGTGACCGAGGGCCATGGGAACCAGGAAAGAGACCGCACCCATATGATTGTCTACATCATCTGTGGAGTGGTGGCCATCATGGTGCTGGTGGGCATCTTCACCAAGCTGGGCCTGGAGAAGAGCAGGGGATCGGCAGTGGCGCAGAACGACCTCAGCAACTccagGGAATATGACCTGCTCcagaaagtgagagggagagagagagagcgaggagaagaAAGGCACAAAggaaaagagacaaagagaggaaggagatcaCAATATGGCCAGAGGACCCTGACAGAGCTTCTGAAGCAGCCCAGAGGAGAGGTTAGCTCAGTGGACAGCACAATCACCAACCCCCCTATCGAAACCAACTACATCTCAGCTAGGATGCTACGCAGCCGCAGCGAGCACTACCACCTGAACAATTCAGCCTTATACCCAGGAATGCCACACCCTCATAGCAACCTCAGTGGACTGGGCCTCAACAAGTACAACTCCCTCAGGGCTGTGGCGGACACTGCCTCTAGGGGATACTATAAGAGCTACCCTTTGATGGACTTCTCCCAGTACCAGGCAGCTCCAGCCTTCCAGCCCATCTCCCTGCACCCCAAGGACAAGTCCTACCTTCACCAGGACCACCACCAGCTCCCCACCCACCACAACCTCCAcgcccccctctccatctccatcccccagAGCCACCCGGAGAGGTCCCGCCTGTCCAAGACCACCAGCCACCCCCTGTTCTCTAGCTCGGCCTTGAAAGCCTGGGACACCAGTGGACACTACGTCCAGAGGCAGACCTCCCAGCCTGGGCACATCTCAGCCCATCAGCATGCCTATTCCACCAGGAGACTGCACAGCGTAGAGAATTTCCCGGAGATGTTCAACCACCCTGTGTCATACGGCCACCCATCCTCCTACCACCACACCAGGCATAAGAGCTACTCCACCAACAGCAAGACAGAGGTCACTGTCTGAGAATGGAGCTCTGAGTTCCTCTGTACCTACAATGATACAGAAACAGATACAAAAATGTACAGGATAGAGAGGAGTGTCGGAGTGTTTAAAAGATACTGGATGAAGGGGGGTTAAAAGATAGGGCAACAATGCATCAGCATCGCCACCCACCACCATGACTAAAGTACAATAACTGAACCACAAAGATCCCCAAGACATTGATAATGCAAGAGAAACACTGTCGCTCTCGGAACACCTCTGAGCCTCTCGGTCTCTATGTCTACCACAACTCCTTGTTGCTCGGAACCTTTCTTTAACTCTACCACATCTCTCCATGCATTCTTCTCTGATCTTGTTCTTTCACCTATATCCTCTATTTCCCacagctcccccctctctcagcccTTAGAAGCGCTGTGTTCAGGCCTTTAGAGGGATGATGGCACCCCCGGGGCCACATTAACTCGACAGGGACAATGCCATCCTCACGTCAGCTCCAATCAGCCTCCGCCCCAgcgcaagacagagagagagagagggagagagacaggtagggagATAGTGGGAAATCACTCTAGGGATCTTTAGAGGAAAGCCGAATGACAGGAGTGGACAAAGTATATATGTAAAGATTTTTCTTCCCTGGGGGTGAAATGAAGGAGTCATTGTGGATCTGGAGACTgtatagcctgggtgccagtctgtttctgctctcttgccaactccttatggaattgTCACGGCTTGACAATGACAATGGAGTAGGCaatggcacaaacagatctgggaccaggctagagacTGGGTCTTGGTGGAGTGTTTATGAGTGCGTGTGAGTATGTGAGGACATACTGGGCTGTCAGTGTAAGTGAATTCGCTGCGGCATCTCGGACCCCAGAGGAGGTCTTCCGTGTTTTCCCCTGATGCACGGACAGTAAAGGGCACAGACAAGAGCTCTAGAGGTGTTGCTAAGGCTACCAGACTCTCTTTAAATGGCAATGGATGTACCCTATTCTACAAGTGGTGCATCTATTTGTTTACCAGGACTATGATTAACCACTGAGGTAAAATAAAGAAACAAAACTATTGTTGAAAAGTAGGATACTTGTACATGACTAAATGACACATAACAGGCAGGGGACTAGTGATAGCAGCATCTTTGGTCAGGTGCCGTAGTTCTAAAACCCAGAAACGGTGCTGAAATGTGTAAGGACCAATGAAGTCTAATCGACGCTACGGTCTCTCGGAAGGTATTGGGTTGAGCACAAACTCACCCTAAAGAGGTACACACATGTAGCCTTGTAGGACCATCCTGCAATCTAGCAAGATCAGGATTGCCATACGAGGCTAACACACATGGCCAACGTACTAGCTGCACACTTCAGATTAATCCACTTCCAGAAGTGCTAATGCTAATGAAGGCAATGAATACAACTAAACTCTTTACATGAGTCATGATCATGATGCATTACTACCCCTTACCTCGCACATCCCTACCCTTCCTCCTTTTCGACAAGTAGTCTAACGTTTAAGAGTGTGTgcgccagtaaccgaaaggtcactggttcaaatccccaag

Function

NR:

description
protein shisa-9B-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576002.2 True 3890 mRNA 0.50 5 21332294 21377525

Neighbor

gene id symbol gene type direction distance location
LOC110499104 LOC106589524 coding upstream 54677 21234211 ~ 21277617 (+)
trnal-uag-53 NA coding upstream 103690 21228523 ~ 21228604 (+)
LOC110499107 LOC106578254 coding upstream 163640 21154535 ~ 21168654 (+)
LOC110499108 LOC106578253 coding upstream 292183 21002651 ~ 21040111 (+)
LOC110499111 LOC106589301 coding upstream 568212 20735432 ~ 20764082 (+)
LOC110499101 ku70 coding downstream 27997 21405522 ~ 21420610 (+)
LOC110499100 LOC106589528 coding downstream 44643 21422168 ~ 21437402 (+)
LOC110499099 LOC106589529 coding downstream 60010 21437535 ~ 21442026 (+)
LOC118941998 NA coding downstream 118869 21496394 ~ 21517265 (+)
LOC110499098 NA coding downstream 140820 21518345 ~ 21562573 (+)
G1673057 NA non-coding upstream 20193 21311742 ~ 21312101 (+)
G1673036 NA non-coding upstream 47304 21284780 ~ 21284990 (+)
G1673011 NA non-coding upstream 118946 21212402 ~ 21213348 (+)
G1672983 NA non-coding upstream 138330 21191637 ~ 21193964 (+)
G1672968 NA non-coding upstream 197367 21134727 ~ 21134927 (+)
G1673166 NA non-coding downstream 5214 21382739 ~ 21383609 (+)
G1673251 NA non-coding downstream 101107 21478632 ~ 21536718 (+)
G1673333 NA non-coding downstream 243926 21621451 ~ 21621681 (+)
G1673334 NA non-coding downstream 245683 21623208 ~ 21623435 (+)
G1673063 NA other upstream 14882 21316798 ~ 21317412 (+)
G1673044 NA other upstream 35440 21296372 ~ 21296854 (+)
G1672973 NA other upstream 141216 21140525 ~ 21191078 (+)
G1672918 NA other upstream 242464 21089403 ~ 21089830 (+)
G1671091 NA other upstream 1104126 20227795 ~ 20228168 (+)
G1673204 NA other downstream 8804 21386329 ~ 21389778 (+)
G1673231 LOC106589530 other downstream 67358 21444883 ~ 21450346 (+)
tnrc6b LOC106589538 other downstream 435720 21806703 ~ 21848442 (+)
LOC110513322 rsl1d1 other downstream 559117 21936590 ~ 21959627 (+)

Expression


Co-expression Network