LOC110499101 (ku70)


Basic Information

Item Value
gene id LOC110499101
gene name ku70
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 21405522 ~ 21420610 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002469914.2
TtagcccgcttctgtttgtgcgggcttgttcttctgtatttgtgagaggtgttaGTGTTTTTGTTGGGTTTTCGCGCTGTCCtggtattattttatttttttacttaagggTACTTATTGTAGTAATAGTTACACCTGTGTTGGGTATAACTATTTTGTTGTTCTTTTTGattttggacattaaagcgtgttttttttccccgcatcctttgctctctgcgcctgactccacacccattcactcattgaGCGTTACAACCTGCATCAACACACAGCGTGTCGTTAGCCATTCTAATCCGAAACACATTCGTAACGCCACACACTCGGTCGCAAGGGCTCCACCAGAGCCTTCCAGTGTAGCCTAGTTGGGGACAATGGCAGAGTGGAACGCCTACTACCAGAATGAGGATGAATATGTGGACAGggatgagtttgaagTGGACTATAAGTGCGCAGGGCGTGACAGCCTGGTGTTTCTGGTGGATGCTTCCAAGGAGATGTTCATcaggggggaggatggagagccCTCACCATTTGACATGACCATGCAGTGTGTCCACAGTGTGTATACCAGTAAGATCATCAGCAGTGACAAGGACCTGGTGGCTCTAGTGTTCTATGGGACGGAACAGAGCAAGAACCCCAGGAACACTTTCGAGCATGTCTATGTTTACCATGACCTGGACTCACCTGgtgcCCGTCGGGTGAAGGATGTGGACGGGCTGCGTGGGGAGAACGGTGCCCAGGTGGCAGATGAGACCATGGGCAGTGGGAAGACCAACCTGGTTGAGGCCCTGTGGTGCTGCTCCAACCTCTACAGCGACGTCAAGTTGCGGCTCTCCTACAAGCGCCTCATGATCTTTACCTGCCGAGACACGCCACACAGGGGCGACTGCGAGCGTGACCGCCAAGCCCGCACCAAGGCCGGTGACCTTAAAGAGACTGgtGTGGTGATAGACCTGATGCATCTGATGAAGCCAGGTGGGTTTGACGTCTCGCTTTTCTTCTGTGACGTGGTGAGCCCCCCTGAGGATGAGTCTGAGCTGGGCCTGCAGATGGAGCCTTGTGGGAAACTGGAGGACCTCCGGAAGAGGGTTCGAGCCAAGGAGATGAAGAAGAGATCCATGGCAAGGTTGAATCTGTGTCTGGGTGAAGGGATGAACGTGGCGGTGGGTGTGTACATCACGGTCCGACAGACCAAGAAGCCTAATGCCGTCAAGCTCTACAGAGACAACAACGAGCCTGTCCACACCAAGACACGCCTttaccacacacagacaggcagcctGCTGCTCCCCAGTGACACCAAGAGGGCTCAGgTGTATGCAGGCAGGCAGATAGTGATGGAGAAAGATGAGGTGGATGTGATAAAGAAGTTTTCTGACCCGGGTCTGGAGCTGATTGGGTTCAAGCCCATGGAGCGTCTCAAACTGCACCACCACCTCAGATCTGCTCTCTTCATCTACCCAGAGGAGGAGACGGTcacagGGAGTGCCTGTGTGTTTACAGCGTTGCTGCGCAGGTGTAGTGAGAGGAACGTGTTCGCTCTGTGTAAATACACACAAATCCGTAACTCTTCCCCACGCTTCTTAGCCCTGGTGCCCCAGAGAGAGGAGCTAGATGAGGGCCAGGCCCAGATTGAGGCTCCAGGCTTCCATGGCATCTTCCTGCCCTACGCGGATGACATCCGTAACCTGGACGCTCCTCAGCTCCCCACCGCCTCCGACGCCCAGGTGGACAAGATGAAGGAGATAGTACACAAGTTATCCTTCAAATACAGtgcCCAAGGTGAAGATGATTGACCAGTGTCTTGGTTCCCTGGCTCAGGAGTTTAAAGATCTGGTGTAACCTGCTGACCTAGAGGGCACCCAAACGCAAACCAGCTGAGGAAGCAGGCGGAGCAGAGAAGAAGCCTAAGGTGGAGATGTCTGAGGACGAGTTGAGGGCTCGTGTACAGAAAGGCACCCTGGTAAGCTGACGGTGCCTGCGCTAAAGGACGCATGTAAGCAGTTTGGGGTGAAGGTCACAGGGACCAAGAAACGGGAGCTAATAGACACCTTGAAGGCACAGCTCGCAAAATGAGGCATAGATGTCAATATATGTTTCTGTCGATTTTTCTGGTCAGAAGTGCTTGGTAGCAGGATTATTGATACGTTTTTGCTTTGGGGTTCCATTTTAAGGGTTCTAGCCAGAGATATCAAGTTTTTCATTTGTTGCTTATTTTTACATGTTTTAATCtttgtaataaaaaaataaagggcAATTGCTTCAA
>XM_021576000.2
tagcccgcttctgtttgtgcgggcttgttcttctgtatttgtgagaggtgttaGTGTTTTTGTTGGGTTTTCGCGCTGTCCtggtattattttatttttttacttaagggTACTTATTGTAGTAATAGTTACACCTGTGTTGGGTATAACTATTTTGTTGTTCTTTTTGattttggacattaaagcgtgttttttttccccgcatcctttgctctctgcgcctgactccacacccattcactcattgaGCGTTACAACCTGCATCAACACACAGCGTGTCGTTAGCCATTCTAATCCGAAACACATTCGTAACGCCACACACTCGGTCGCAAGGGCTCCACCAGAGCCTTCCAGTGTAGCCTAGTTGGGGACAATGGCAGAGTGGAACGCCTACTACCAGAATGAGGATGAATATGTGGACAGggatgagtttgaagTGGACTATAAGTGCGCAGGGCGTGACAGCCTGGTGTTTCTGGTGGATGCTTCCAAGGAGATGTTCATcaggggggaggatggagagccCTCACCATTTGACATGACCATGCAGTGTGTCCACAGTGTGTATACCAGTAAGATCATCAGCAGTGACAAGGACCTGGTGGCTCTAGTGTTCTATGGGACGGAACAGAGCAAGAACCCCAGGAACACTTTCGAGCATGTCTATGTTTACCATGACCTGGACTCACCTGgtgcCCGTCGGGTGAAGGATGTGGACGGGCTGCGTGGGGAGAACGGTGCCCAGGTGGCAGATGAGACCATGGGCAGTGGGAAGACCAACCTGGTTGAGGCCCTGTGGTGCTGCTCCAACCTCTACAGCGACGTCAAGTTGCGGCTCTCCTACAAGCGCCTCATGATCTTTACCTGCCGAGACACGCCACACAGGGGCGACTGCGAGCGTGACCGCCAAGCCCGCACCAAGGCCGGTGACCTTAAAGAGACTGgtGTGGTGATAGACCTGATGCATCTGATGAAGCCAGGTGGGTTTGACGTCTCGCTTTTCTTCTGTGACGTGGTGAGCCCCCCTGAGGATGAGTCTGAGCTGGGCCTGCAGATGGAGCCTTGTGGGAAACTGGAGGACCTCCGGAAGAGGGTTCGAGCCAAGGAGATGAAGAAGAGATCCATGGCAAGGTTGAATCTGTGTCTGGGTGAAGGGATGAACGTGGCGGTGGGTGTGTACATCACGGTCCGACAGACCAAGAAGCCTAATGCCGTCAAGCTCTACAGAGACAACAACGAGCCTGTCCACACCAAGACACGCCTttaccacacacagacaggcagcctGCTGCTCCCCAGTGACACCAAGAGGGCTCAGgTGTATGCAGGCAGGCAGATAGTGATGGAGAAAGATGAGGTGGATGTGATAAAGAAGTTTTCTGACCCGGGTCTGGAGCTGATTGGGTTCAAGCCCATGGAGCGTCTCAAACTGCACCACCACCTCAGATCTGCTCTCTTCATCTACCCAGAGGAGGAGACGGTcacagGGAGTGCCTGTGTGTTTACAGCGTTGCTGCGCAGGTGTAGTGAGAGGAACGTGTTCGCTCTGTGTAAATACACACAAATCCGTAACTCTTCCCCACGCTTCTTAGCCCTGGTGCCCCAGAGAGAGGAGCTAGATGAGGGCCAGGCCCAGATTGAGGCTCCAGGCTTCCATGGCATCTTCCTGCCCTACGCGGATGACATCCGTAACCTGGACGCTCCTCAGCTCCCCACCGCCTCCGACGCCCAGGTGGACAAGATGAAGGAGATAGTACACAAGTTATCCTTCAAATACAGGAGTGATGCTTTTGAGAACCCAGTCCTCCAGCAGCACTACAGGTACCTGGAAGCCTTGGCACTAGATCCCATGGCCCCGGAACACATAGAGGAACACATAGAGGACCACACCGtgcCCAAGGTGAAGATGATTGACCAGTGTCTTGGTTCCCTGGCTCAGGAGTTTAAAGATCTGGTGTAACCTGCTGACCTAGAGGGCACCCAAACGCAAACCAGCTGAGGAAGCAGGCGGAGCAGAGAAGAAGCCTAAGGTGGAGATGTCTGAGGACGAGTTGAGGGCTCGTGTACAGAAAGGCACCCTGGTAAGCTGACGGTGCCTGCGCTAAAGGACGCATGTAAGCAGTTTGGGGTGAAGGTCACAGGGACCAAGAAACGGGAGCTAATAGACACCTTGAAGGCACAGCTCGCAAAATGAGGCATAGATGTCAATATATGTTTCTGTCGATTTTTCTGGTCAGAAGTGCTTGGTAGCAGGATTATTGATACGTTTTTGCTTTGGGGTTCCATTTTAAGGGTTCTAGCCAGAGATATCAAGTTTTTCATTTGTTGCTTATTTTTACATGTTTTAATCtttgtaataaaaaaataaagggcAATTGCTTCAA

Function

symbol description
ku70 ATP-dependent DNA helicase 2 subunit 1

NR:

description
X-ray repair cross-complementing protein 5-like

GO:

id name namespace
GO:0006303 double-strand break repair via nonhomologous end joining biological_process
GO:0010212 response to ionizing radiation biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0000723 telomere maintenance biological_process
GO:0032508 DNA duplex unwinding biological_process
GO:0043564 Ku70 cellular_component
GO:0042162 telomeric DNA binding molecular_function
GO:0003684 damaged DNA binding molecular_function

KEGG:

id description
K10884 XRCC6, KU70, G22P1; ATP-dependent DNA helicase 2 subunit 1

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002469914.2 False 2272 mRNA 0.51 12 21405522 21420610
XM_021576000.2 True 2384 mRNA 0.52 13 21405523 21420610

Neighbor

gene id symbol gene type direction distance location
LOC110499103 LOC106589525 coding upstream 27997 21332294 ~ 21377525 (+)
LOC110499104 LOC106589524 coding upstream 127905 21234211 ~ 21277617 (+)
trnal-uag-53 NA coding upstream 176918 21228523 ~ 21228604 (+)
LOC110499107 LOC106578254 coding upstream 236868 21154535 ~ 21168654 (+)
LOC110499108 LOC106578253 coding upstream 365411 21002651 ~ 21040111 (+)
LOC110499100 LOC106589528 coding downstream 1558 21422168 ~ 21437402 (+)
LOC110499099 LOC106589529 coding downstream 16925 21437535 ~ 21442026 (+)
LOC118941998 NA coding downstream 75784 21496394 ~ 21517265 (+)
LOC110499098 NA coding downstream 97735 21518345 ~ 21562573 (+)
LOC110499096 LOC106589531 coding downstream 152425 21573035 ~ 21586408 (+)
G1673166 NA non-coding upstream 21913 21382739 ~ 21383609 (+)
G1673183 NA non-coding upstream 50745 21354563 ~ 21354777 (+)
G1673057 NA non-coding upstream 93421 21311742 ~ 21312101 (+)
G1673036 NA non-coding upstream 120532 21284780 ~ 21284990 (+)
G1673011 NA non-coding upstream 192174 21212402 ~ 21213348 (+)
G1673251 NA non-coding downstream 58022 21478632 ~ 21536718 (+)
G1673333 NA non-coding downstream 200841 21621451 ~ 21621681 (+)
G1673334 NA non-coding downstream 202598 21623208 ~ 21623435 (+)
G1673368 NA non-coding downstream 255415 21676025 ~ 21681986 (+)
G1673204 NA other upstream 15744 21386329 ~ 21389778 (+)
G1673063 NA other upstream 88110 21316798 ~ 21317412 (+)
G1673044 NA other upstream 108668 21296372 ~ 21296854 (+)
G1672973 NA other upstream 214444 21140525 ~ 21191078 (+)
G1672918 NA other upstream 315692 21089403 ~ 21089830 (+)
G1673231 LOC106589530 other downstream 24273 21444883 ~ 21450346 (+)
tnrc6b LOC106589538 other downstream 392635 21806703 ~ 21848442 (+)
LOC110513322 rsl1d1 other downstream 516032 21936590 ~ 21959627 (+)
LOC110499192 LOC106589579 other downstream 1836194 23252800 ~ 23269058 (+)

Expression


Co-expression Network