LOC110499099 (LOC106589529)


Basic Information

Item Value
gene id LOC110499099
gene name LOC106589529
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 21437535 ~ 21442026 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021575996.2
CTGCGTGCGCGGACCCATGTTCCAGCGTTAGCTCCAGGCTCGAGCTGACAGCGTTGCTTTGGCGCTGTGGAACGAAGAGCGCGCCTAGGACGAGCTTTTGGAAGCACGGGGACGCGCCAAGCAGTGCAGATGTGTCGCAGATTTGAGAAGTCACTGTACATACGGAAATATCTGGTACAAGGAAGTGGAAGGGAGAAATTCAGCTCCAACTTAAACGAAAACAATGCTCAGTTTGTAGAGGGAGGGTTGGGGGAGGAGAAAACAGCAGTTTTTGAAACGCGACGCGTAGAGACTTGTCATTGCCTGTATACAGTTACTTTATAGCGGAGAGCTAAACTAACATCAGTTATTCTCGTTTGTACTGGATCAATCTATTTCAAAGAGCAGGCAGAACGTTCTGTGCTGGACCAATGGAGCTGTCAGCGATTGGTGAACAAGTGTTTGCTGTGGAATCAATAATCAAGAAAAGAGTTAGAAAGGGAAACGTGGAATATCTGTTGAAGTGGAAGGGATGGCCACCCAAatacagtacatggGAACCAGAGGAGCACATCTTGGACCAGCGTCTGGTGCAGACCTATGATGAGAAAGAGCAGAAGGACAGAGCCCTGGGGTACCGGAAGAGAGGACCCAAAGCTAAAAGGCTTCTACTACAGAATACTATTTACAACATGGATCTCCGGAGCGCCCATAAGGCCCTAGAGAAACCTCCAGCTCGCCTACGTCTTTCCCTGACTCGCTCACTGGAGTCTGAGGCAGAGGACCCAACCTATGGGGCCTGTAGACGGAGCCTGCACCCCCGCCTGGCCCATCGCAAGAACAAACCCAGAAGATCACAGTTCATGTGCCTGGCCTCTCCCCCTGGCCCCCCTAACCCCACAAAGGTCCCCACACATGATGAttggggaaggagagaagaggaagatgacatggaggaagaggaggaaactcGACAGGAGCAGtcggagcgagagacagagatatgcAGTGGCATTCTGAATGggcAGGATAGGGCAGAGGACTGGAGTTCTGTGATTGGCTCAGACGAAGTGACCGCGTCAGAGCGGTCTGCTGTTTGGAGCCCAGTGATTGGCCCAGGGGAGGTGACCGTGACTGATGTCACCATAAACTCTCTCACAGTGACTTTCAAAGAAGCCCTGGCAGCCAAAGGCTTCTTCAGAGGCTGGGGCTTAGAGTTCTGAAACACACAGCTGCACAAACAGACAAAACCTGGTCGGGgaacagaatgagagagatggaaagtgtGGCTCTTGAGTTATCTTTACACTCTGTTTGGACTGTGTGACCGCTTGTTCTCCTCATCCCTTTACCCTTCCCTTTCTGGCTGTGTGATTGACCTCTGTCCACACTAACTTCCTATTTCATTCAATAGGCATactgtagtgtacagtatatactgactACATTGAGATGGGCATACACTCCTACATTGAGCTAtacacagtatactgtataccataTCCTTCTATACAAAACAGTTATTTTTCTGGACTGTTATTAGATAAACATGTGGCTTAGTAGAGTCTTGTGGTGATTTAGAAATCCTCTGCAAGATGGCTTTATCAGCCTGCATgcctttctcctgtcctctctctgggtACATACTGATACTCAAGACATTTTGGTGACCCACTAAAGACCTGCGCAACACATCCAGTGTAAACTAACCTTAAAAGTGGAACCAAAAACCTATATAAAAAAACAGACTTAGGAACAGTCTGTTCTTTTCTGAA

Function

NR:

description
chromobox protein homolog 7-like

GO: NA

KEGG:

id description
K11454 CBX7; chromobox protein 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021575996.2 True 1754 mRNA 0.49 6 21437535 21442026

Neighbor

gene id symbol gene type direction distance location
LOC110499100 LOC106589528 coding upstream 133 21422168 ~ 21437402 (+)
LOC110499101 ku70 coding upstream 16925 21405522 ~ 21420610 (+)
LOC110499103 LOC106589525 coding upstream 60010 21332294 ~ 21377525 (+)
LOC110499104 LOC106589524 coding upstream 159918 21234211 ~ 21277617 (+)
trnal-uag-53 NA coding upstream 208931 21228523 ~ 21228604 (+)
LOC118941998 NA coding downstream 54368 21496394 ~ 21517265 (+)
LOC110499098 NA coding downstream 76319 21518345 ~ 21562573 (+)
LOC110499096 LOC106589531 coding downstream 131009 21573035 ~ 21586408 (+)
LOC110499095 LOC106589533 coding downstream 152855 21594881 ~ 21614231 (+)
csdc2a LOC106589535 coding downstream 185879 21627905 ~ 21636035 (+)
G1673166 NA non-coding upstream 53926 21382739 ~ 21383609 (+)
G1673183 NA non-coding upstream 82758 21354563 ~ 21354777 (+)
G1673057 NA non-coding upstream 125434 21311742 ~ 21312101 (+)
G1673036 NA non-coding upstream 152545 21284780 ~ 21284990 (+)
G1673251 NA non-coding downstream 36606 21478632 ~ 21536718 (+)
G1673333 NA non-coding downstream 179425 21621451 ~ 21621681 (+)
G1673334 NA non-coding downstream 181182 21623208 ~ 21623435 (+)
G1673368 NA non-coding downstream 233999 21676025 ~ 21681986 (+)
G1673369 NA non-coding downstream 234288 21676314 ~ 21682360 (+)
G1673204 NA other upstream 47757 21386329 ~ 21389778 (+)
G1673063 NA other upstream 120123 21316798 ~ 21317412 (+)
G1673044 NA other upstream 140681 21296372 ~ 21296854 (+)
G1672973 NA other upstream 246457 21140525 ~ 21191078 (+)
G1673231 LOC106589530 other downstream 2857 21444883 ~ 21450346 (+)
tnrc6b LOC106589538 other downstream 371219 21806703 ~ 21848442 (+)
LOC110513322 rsl1d1 other downstream 494616 21936590 ~ 21959627 (+)
LOC110499192 LOC106589579 other downstream 1814778 23252800 ~ 23269058 (+)
faap100 faap100 other downstream 2138004 23576429 ~ 23582556 (+)

Expression

LOC110499099(LOC106589529) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 12.
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LOC110499099(LOC106589529) Expression in each Bioproject

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LOC110499099(LOC106589529) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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Co-expression Network